Sequence
atgc intronic sequence ATGC exonic sequence...ctaataacattatggacttattcaatttcctcaaacctccaaacaccccattagtttttccatgcaatttacgtttcaagttttctactttgttttccagCTGGAATTGTTCTTGAGGAGAAAAATTGGCCACCATTCTTCCCAATTATCCATCATGATATTGCGAATGAAATACCGATTCATCTACAAAAGTTGCAGTA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv00s0301g00030.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: LOC_Os05g42330.2 (Oryza sativa), 3'ss of exon 4
-ctaataacattatggacttattcaatttcctcaaacctccaaacaccccattagtttttccatgcaatttacgt-ttcaagttttctactttgttttccagCTGGAATTGTTCTTGAGGAGAAAAATTGGCCACCATTCTTCCCAATTATCCATCATGATATTGCGAATGAAATACCGATTCATCTACAAAAGTTGCAGTA
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tgcattgtctgctagcatttgtttctactgttgtagcta--agatgccctttacaaagttgcttactatttatttacctaacttcacccttctcttttgcagCTGGCATTGTCATTGAAGATAAAAATTGGCCACCCTTTTTCCCTCTCATTCACCATAATATTTCAAATGAGATACCTATTCATCTACAAAGAATGCAGTA
upper sequence: Vv00s0301g00030.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: LOC_Os07g37740.1 (Oryza sativa), 3'ss of exon 5
---ctaataacattatggacttattcaatttcctcaaacctccaa-acaccccattagtttttccatgcaatttacgtttcaagttttctactttgttttccagCTGGAATTGTTCTTGAGGAGAAAAATTGGCCACCATTCTTCCCAATTATCCATCATGATATTGCGAATGAAATACCGATTCATCTACAAAAGTTGCAGTA
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tttagaataacaaggtgttcagactaatataacttatgcattaaacatttctcacgggctattaaacttatgccactttattggtataacacttt----tgcagCTGGTATTGTCATTGAGGAGAAAAACTGGCCTCCATTTCTGCCACTCATCCATCATGATATCACCAATGAGATACCGAGTCACCTTCAAAGAATGCAATA
upper sequence: Vv00s0301g00030.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GRMZM2G041181_T01 (Zea mays), 3'ss of exon 5
-ctaataacattatggacttattcaatttcctcaaacctccaaacaccccattagtttttccatgcaatttacgtttcaagttttctactttgttttccagCTGGAATTGTTCTTGAGGAGAAAAATTGGCCACCATTCTTCCCAATTATCCATCATGATATTGCGAATGAAATACCGATTCATCTACAAAAGTTGCAGTA
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ctgggccttgtcatgaagattatttgttccatgtttttaatataaagctcattttgtttcagaggttgctaa-gcttacattttattattttgtttggcagCTGGCATTGTCATTGAGGAGAAAAATTGGCCTCCTTTTCTGCCACTCATCCATCATGATATCACCAATGAGATACCGAGTCACCTTCAAAGAATGCAATA
upper sequence: Vv00s0301g00030.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GRMZM2G448715_T01 (Zea mays), 3'ss of exon 5
ctaataacattatggacttattcaatttcctcaaacctccaaacaccccattagtttttccatgcaatttac--gtttcaagttttctactttgttttccagCTGGAATTGTTCTTGAGGAGAAAAATTGGCCACCATTCTTCCCAATTATCCATCATGATATTGCGAATGAAATACCGATTCATCTACAAAAGTTGCAGTA
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--cagggcattggcatgaaaattattttgatccatgtttttaagataaagttcattttgtttcacaagtttctaagcttacatttcattatttgtttggcagCTGGCATTGTCATTGAGGAGAAAAATTGGCCTCCTTTTATGCCACTCATCCATCATGATATCATCAATGAGATACCGAGTCACCTTCAAAGAATGCAATA
upper sequence: Vv00s0301g00030.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA15G07480.2 (Glycine max), 3'ss of exon 5
----ctaat--aacattatggacttattcaatttcctcaaacctccaaacaccccattagtttttccatgcaatttacgtttcaagttttctactttgttttccagCTGGAATTGTTCTTGAGGAGAAAAATTGGCCACCATTCTTCCCAATTATCCATCATGATATTGCGAATGAAATACCGATTCATCTACAAAAGTTGCAGTA
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ggtgcttatcaaaaagtttgaactcatgctttttgcttgaacaat-aaatatttt-ttggtctacttttattcttcaagtgtgtaatt----acattattttacagCTGGAATTGTTCTTGAGGAGAAGAATTGGCCGCCATTTTTCCCAATTATCCATCATGATATTGCTAATGAAATACCAATTCATCTTCAAAGATTGCAGTA
upper sequence: Vv00s0301g00030.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA13G31830.1 (Glycine max), 3'ss of exon 5
-------ctaataacattatggacttattcaatttcctcaaacctccaaacaccccattagtttttccatgcaatttacgtttcaagttttctactttgttttccagCTGGAATTGTTCTTGAGGAGAAAAATTGGCCACCATTCTTCCCAATTATCCATCATGATATTGCGAATGAAATACCGATTCATCTACAAAAGTTGCAGTA
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ttgggtgcttatcaaagtttgaactcatgctttttgcttgaacaat-aaatattt--ttggtctgcttttattcttcatgtgtgtaatt----acattatcttacagCTGGAATTGTTCTTGAGGAGAAGAATTGGCCGCCATTTTTCCCAATTATCCATCATGATATCGCTAATGAAATTCCAATTCATCTTCAAAGATTGCAGTA
upper sequence: Vv00s0301g00030.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA07G31090.1 (Glycine max), 3'ss of exon 5
ctaataacattatggacttattcaatttcctcaaacctccaaacaccc-cattagtttttccatgcaatttacgtttcaagttttctactttgttttccagCTGGAATTGTTCTTGAGGAGAAAAATTGGCCACCATTCTTCCCAATTATCCATCATGATATTGCGAATGAAATACCGATTCATCTACAAAAGTTGCAGTA
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atgatagtactgccgaaatctatagatgtcttggaattatatgcactaattttagttctgctttggtacttctagtaggtatttac-attttgttttgcagCTGGAATTGTTCTTGAGGAGAAGAATTGGCCGCCTTTTTTCCCAATAATCCATCATGACATTGCTAATGAAATTCCAATTCATCTTCAAAAATTGCAATA
upper sequence: Vv00s0301g00030.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA13G25460.1 (Glycine max), 3'ss of exon 4
ctaataacatt--atggacttattcaatttcctcaaacctccaaacaccccattagtttttccatgcaatttacgtttcaagttttctacttt-gttttccagCTGGAATTGTTCTTGAGGAGAAAAATTGGCCACCATTCTTCCCAATTATCCATCATGATATTGCGAATGAAATACCGATTCATCTACAAAAGTTGCAGTA
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---ttggcattcaattgcatagaggaagtgtcttggaattatatgcactaatttaggttctgctttagtactactagtaggtatttatatttttgttttgcagCTGGAATTGTTCTTGAGGAGAAGAATTGGCCGCCTTTTTTCCCAATAATCCATCACGACATTGCTAATGAAATTCCAATTCATCTTCAAAAATTGCAATAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110694691|gb|EE072020.1|EE072020EST: GAAGTAAAACGGAAAGAAGATGCTGCTGCACGAG CTGGAATTGTTCTTGAGGAGAAAAATTGGCCACCATTCTTCCCAATTATCC
genomic: GAAGTAAAACGGAAAGAAGATGCTGCTGCACGAGgtactttgca ... tgttttccagCTGGAATTGTTCTTGAGGAGAAAAATTGGCCACCATTCTTCCCAATTATCC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ccccattagtttttccatgcaatttacgtttcaagttttctactttgttttccagCTGGAATTGTTCTTGAGGAGAAAAATTGGCCACCATTCTTCCCAATTATCCATCATGATATTGCGAATGAAATACCGATTCATCTACAAAAGTTGCAGTA
ttttctactttgtttt CT-rich tract
ttagttttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ctaataacattatggacttattcaatttcctcaaacctccaaacaccccattagtttttccatgcaatttacgtttcaagttttctactttgttttccagCTGGAATTGTTCTTGAGGAGAAAAATTGGCCACCATTCTTCCCAATTATCCATCATGATATTGCGAATGAAATACCGATTCATCTACAAAAGTTGCAGTA
- aataaca
- - - - - - - - - - - - - - - -caaacct
- - - - - - - - - - - - - - - - - - - ccaaaca
- - - - - - - - - - - - - - - - - - - - - - -ccccatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccatgca