1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...ttaacattttgtacaattggataatcattggactatagcttaagtctgatatttcaatgcatccttgcatcaattatgatgacatattattttaatgtagGTAATTTTAAATGATCCATTTCTTGGCAAACGTGTTGAAGAAGGAAGCTTTTCTACTGTGCCATTGAGGGATGAGTTTCTCGAAAATGCCCGGCTTTTTA
species | Vitis vinifera |
transcript | Vv00s0252g00070.t01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TCAATTATGACTTCGATGGAGCACAAAAGAAGATGAGAGAATGTGAAGAA GTAATTTTAAATGATCCATTTCTTGGCAAACGTGTTGAAGAAGGAAGCTTTEST: gi|71888199|gb|DT037254.1|DT037254
genomic: TCAATTATGACTTCGATGGAGCACAAAAGAAGATGAGAGAATGTGAAGAAgtaagtttcc ... tttaatgtagGTAATTTTAAATGATCCATTTCTTGGCAAACGTGTTGAAGAAGGAAGCTTT
EST: TCAATTATGACTTCGATGGAGCACAAAAGAAGATGAGAGAATGTGAAGAA GTAATTTTAAATGATCCATTTCTTGGCAAACGTGTTGAAGAAGGAAGCTTTEST: gi|110363505|gb|EC927099.1|EC927099
genomic: TCAATTATGACTTCGATGGAGCACAAAAGAAGATGAGAGAATGTGAAGAAgtaagtttcc ... tttaatgtagGTAATTTTAAATGATCCATTTCTTGGCAAACGTGTTGAAGAAGGAAGCTTT
EST: TCAATTATGACTTCGATGGAGCACAAAAGAAGATGAGAGAATGTGAAGAA GTAATTTTAAATGATCCATTTCTTGGCAAACGTGTTGAAGAAGGAAGCTTTEST: gi|351035098|gb|FQ458455.1|FQ458455
genomic: TCAATTATGACTTCGATGGAGCACAAAAGAAGATGAGAGAATGTGAAGAAgtaagtttcc ... tttaatgtagGTAATTTTAAATGATCCATTTCTTGGCAAACGTGTTGAAGAAGGAAGCTTT
EST: TCAATTATGACTTCGATGGAGCACAAAAGAAGATGAGAGAATGTGAAGAA GTAATTTTAAATGATCCATTTCTTGGCAAACGTGTTGAAGAAGGAAGCTTTEST: gi|34543920|gb|CF512152.1|CF512152
genomic: TCAATTATGACTTCGATGGAGCACAAAAGAAGATGAGAGAATGTGAAGAAgtaagtttcc ... tttaatgtagGTAATTTTAAATGATCCATTTCTTGGCAAACGTGTTGAAGAAGGAAGCTTT
EST: TCAATTATGACTTCGATGGAGCACAAAAGAAGATGAGAGAATGTGAAGAA GTAATTTTAAATGATCCATTTCTTGGCAAACGTGTTGAAGAAGGAAGCTTTEST: gi|30302336|gb|CB979130.1|CB979130
genomic: TCAATTATGACTTCGATGGAGCACAAAAGAAGATGAGAGAATGTGAAGAAgtaagtttcc ... tttaatgtagGTAATTTTAAATGATCCATTTCTTGGCAAACGTGTTGAAGAAGGAAGCTTT
EST: TCAATTATGACTTCGATGGAGCACAAAAGAAGATGAGAGAATGTGAAGAA GTAATTTTAAATGATCCATTTCTTGGCAAACGTGTTGAAGAAGGAAGCTTTEST: gi|349827029|gb|FQ421302.1|FQ421302
genomic: TCAATTATGACTTCGATGGAGCACAAAAGAAGATGAGAGAATGTGAAGAAgtaagtttcc ... tttaatgtagGTAATTTTAAATGATCCATTTCTTGGCAAACGTGTTGAAGAAGGAAGCTTT
EST: TCAATTATGACTTCGATGGAGCACAAAAGAAGATTAGAGAATGTGAAGAA GTAATTTTAAATGATCCATTTCTTGGCAAACGTGTTGAAGAAGGAAGCTTTEST: gi|110361713|gb|EC925206.1|EC925206
genomic: TCAATTATGACTTCGATGGAGCACAAAAGAAGATGAGAGAATGTGAAGAAgtaagtttcc ... tttaatgtagGTAATTTTAAATGATCCATTTCTTGGCAAACGTGTTGAAGAAGGAAGCTTT
EST: TCAATTATGACTTCGATGGAGCACAAAAGAAGATGAGAGAATGTGAAGAA GTAATTTTAAATGATCCATTTCTTGGCAAACGTGTTGAAGAAGGAAGCTTTEST: gi|45770682|gb|CN006534.1|CN006534
genomic: TCAATTATGACTTCGATGGAGCACAAAAGAAGATGAGAGAATGTGAAGAAgtaagtttcc ... tttaatgtagGTAATTTTAAATGATCCATTTCTTGGCAAACGTGTTGAAGAAGGAAGCTTT
EST: TC-ATTATG-CTTCGAT-GAGCAC-AAAGAAGA-GAGAGAATGTGAAGAA GTAATTTTAAATGATCCATTTCTTGGCAAACGTGTTGAAGAAGGAAGCTTTEST: gi|110709660|gb|EE085316.1|EE085316
genomic: TCAATTATGACTTCGATGGAGCACAAAAGAAGATGAGAGAATGTGAAGAAgtaagtttcc ... tttaatgtagGTAATTTTAAATGATCCATTTCTTGGCAAACGTGTTGAAGAAGGAAGCTTT
EST: TCAATTATGACTTCGATGGAGCACAAAAGAAGATGAGAGAATGTGAAGAA GTAATTTTAAATGATCCATTTCTTGGCAAACGTGTTGAAGAAGGAAGCTTTEST: gi|30302404|gb|CB979198.1|CB979198
genomic: TCAATTATGACTTCGATGGAGCACAAAAGAAGATGAGAGAATGTGAAGAAgtaagtttcc ... tttaatgtagGTAATTTTAAATGATCCATTTCTTGGCAAACGTGTTGAAGAAGGAAGCTTT
EST: TCAATTATGACTTCGATGGAGCACAAAAGAAGATGAGAGAATGTGAAGAA GTAATTTTAAATGATCCATTTCTTGGCAAACGTGTTGAAGAAGGAAGCTTTEST: gi|351019002|gb|FQ426501.1|FQ426501
genomic: TCAATTATGACTTCGATGGAGCACAAAAGAAGATGAGAGAATGTGAAGAAgtaagtttcc ... tttaatgtagGTAATTTTAAATGATCCATTTCTTGGCAAACGTGTTGAAGAAGGAAGCTTT
EST: TCAATTATGACTTCGATGGAGCACAAAAGAAGATGAGAGAATGTGAAGAA GTAATTTTAAATGATCCATTTCTTGGCAAACGTGTTGAAGAAGGAAGCTTTEST: gi|71883037|gb|DT032092.1|DT032092
genomic: TCAATTATGACTTCGATGGAGCACAAAAGAAGATGAGAGAATGTGAAGAAgtaagtttcc ... tttaatgtagGTAATTTTAAATGATCCATTTCTTGGCAAACGTGTTGAAGAAGGAAGCTTT
EST: TCAATTATGACTTCGATGGAGCACAAAAGAAGATGAGAGAATGTGAAGAA GTAATTTTAAATGATCCATTTCTTGGCAAACGTGTTGAAGAAGGAAGCTTTEST: gi|34544541|gb|CF512773.1|CF512773
genomic: TCAATTATGACTTCGATGGAGCACAAAAGAAGATGAGAGAATGTGAAGAAgtaagtttcc ... tttaatgtagGTAATTTTAAATGATCCATTTCTTGGCAAACGTGTTGAAGAAGGAAGCTTT
EST: TCAATTATGACTTCGATGGAGCACAAAAGAAGATGAGAGAATGTGAAGAA GTAATTTTAAATGATCCATTTCTTGGCAAACGTGTTGAAGAAGGAAGCTTTEST: gi|110385422|gb|EC949946.1|EC949946
genomic: TCAATTATGACTTCGATGGAGCACAAAAGAAGATGAGAGAATGTGAAGAAgtaagtttcc ... tttaatgtagGTAATTTTAAATGATCCATTTCTTGGCAAACGTGTTGAAGAAGGAAGCTTT
EST: TCAATTATGACTTCGATGGAGCACAAAAGAAGATGAGAGAATGTGAAGAA GTAATTTTAAATGATCCATTTCTTGGCAAACGTGTTGAAGAAGGAAGCTTTEST: gi|110374343|gb|EC939024.1|EC939024
genomic: TCAATTATGACTTCGATGGAGCACAAAAGAAGATGAGAGAATGTGAAGAAgtaagtttcc ... tttaatgtagGTAATTTTAAATGATCCATTTCTTGGCAAACGTGTTGAAGAAGGAAGCTTT
EST: TCAATTATGACTTCGATGGAGCACAAAAGAAGATGAGAGAATGTGAAGAA GTAATTTTAAATGATCCATTTCTTGGCAAACGTGTTGAAGAAGGAAGCTTTEST: gi|110690210|gb|EE067120.1|EE067120
genomic: TCAATTATGACTTCGATGGAGCACAAAAGAAGATGAGAGAATGTGAAGAAgtaagtttcc ... tttaatgtagGTAATTTTAAATGATCCATTTCTTGGCAAACGTGTTGAAGAAGGAAGCTTT
EST: TCAATTATGACTTCGATGGAGCACAAAAGAAGATGAGAGAATGTGAAGAA GTAATTTTAAATGATCCATTTCTTGGCAAACGTGTTGAAGAAGGAAGCTTTEST: gi|294967018|gb|GW839893.1|GW839893
genomic: TCAATTATGACTTCGATGGAGCACAAAAGAAGATGAGAGAATGTGAAGAAgtaagtttcc ... tttaatgtagGTAATTTTAAATGATCCATTTCTTGGCAAACGTGTTGAAGAAGGAAGCTTT
EST: TCAACTATGACTTCGATGGAGCACAAAAGAAGATGAGAGAATGTGAAGAA GTAATTTTAAATGATCCATTTCTTGGCAAACGTGTTGAAGAAGGAAGCTTTEST: gi|34543854|gb|CF512086.1|CF512086
genomic: TCAATTATGACTTCGATGGAGCACAAAAGAAGATGAGAGAATGTGAAGAAgtaagtttcc ... tttaatgtagGTAATTTTAAATGATCCATTTCTTGGCAAACGTGTTGAAGAAGGAAGCTTT
EST: AAAAGAAGATGAGAGAATGTGAAGAA GTAATTTTAAATGATCCCATTTCTTGGCAAACGTGTTGAAGAAGGAAGCTTEST: gi|32459206|gb|CD800380.1|CD800380
genomic: AAAAGAAGATGAGAGAATGTGAAGAAgtaagtttcc ... tttaatgtagGTAATTTTAAATGAT-CCATTTCTTGGCAAACGTGTTGAAGAAGGAAGCTT
EST: GAAGATGAGAGAATGTGAAGAA GTAATTTTAAATGATCCATTTTTCTTGGCAAACGTGTTGAAGAAGGAAGCT
genomic: GAAGATGAGAGAATGTGAAGAAgtaagtttcc ... tttaatgtagGTAATTTTAAATGATCCA--TTTCTTGGCAAACGTGTTGAAGAAGGAAGCT
ctgatatttcaatgcatccttgcatcaattatgatgacatattattttaatgtagGTAATTTTAAATGATCCATTTCTTGGCAAACGTGTTGAAGAAGGAAGCTTTTCTACTGTGCCATTGAGGGATGAGTTTCTCGAAAATGCCCGGCTTTTTA
ttttaat putative branch site (score: 3)
ttatttt CT-rich tract
atcaattatgatgaca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttaacattttgtacaattggataatcattggactatagcttaagtctgatatttcaatgcatccttgcatcaattatgatgacatattattttaatgtagGTAATTTTAAATGATCCATTTCTTGGCAAACGTGTTGAAGAAGGAAGCTTTTCTACTGTGCCATTGAGGGATGAGTTTCTCGAAAATGCCCGGCTTTTTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcatcaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgatgac