1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtatccaatattgattatcatgcttctattcaccaagagtgtgttatgtttccgttgtagtcatctaaactttttcttatctcagTGCTGCAATGCTGTGCTTTTATTCATATGTAATGATCTCTGGAGGAAATCCACCACCGAAGAAGTTGAAGGCAACTGAACGCCACTCATCATGATGATAA
species | Vitis vinifera |
transcript | Vv00s0252g00030.t01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: ACAAAGAAACTGTTTCCTACTGGGTTTTTTGCCATCATTAG TGCTGCAATGCTGTGCTTTTATTCATATGTAATGATCTCTGGAGGAAATCCEST: gi|110700165|gb|EE077889.1|EE077889
genomic: ACAAAGAAACTGTTTCCAACTGGGTTTTTTGCCATCATTAGgtatccaata ... cttatctcagTGCTGCAATGCTGTGCTTTTATTCATATGTAATGATCTCTGGAGGAAATCC
EST: ACAAAGAAACTGTTTCCAACTGGGTTTTTTGCCATCATTAG TGCTGCAATGCTGTGCTTTTATTCATATGTAATGATCTCTGGAGGAAATCCEST: gi|110723662|gb|EE101228.1|EE101228
genomic: ACAAAGAAACTGTTTCCAACTGGGTTTTTTGCCATCATTAGgtatccaata ... cttatctcagTGCTGCAATGCTGTGCTTTTATTCATATGTAATGATCTCTGGAGGAAATCC
EST: ACAAAGAAACTGTTTCCAACTGGGTTTTTTGCCATCATTAG TGCTGCAATGCTGTGCTTTTATTCATATGTAATGATCTCTGGAGGAAATCCEST: gi|110385058|gb|EC949544.1|EC949544
genomic: ACAAAGAAACTGTTTCCAACTGGGTTTTTTGCCATCATTAGgtatccaata ... cttatctcagTGCTGCAATGCTGTGCTTTTATTCATATGTAATGATCTCTGGAGGAAATCC
EST: ACAAAGAAACTGTTTCCAACTGGGTTTTTTGCCATCATTAG TGCTGCAATGCTGTGCTTTTATTCATATGTAATGATCTCTGGAGGAAATCCEST: gi|110724958|gb|EE101251.1|EE101251
genomic: ACAAAGAAACTGTTTCCAACTGGGTTTTTTGCCATCATTAGgtatccaata ... cttatctcagTGCTGCAATGCTGTGCTTTTATTCATATGTAATGATCTCTGGAGGAAATCC
EST: ACAAAGAAACTGTTTCCAACTGGGTTTTTTGCCATCATTAG TGCTGCAATGCTGTGCTTTTATTCATATGTAATGATCTCTGGAGGAAATCC
genomic: ACAAAGAAACTGTTTCCAACTGGGTTTTTTGCCATCATTAGgtatccaata ... cttatctcagTGCTGCAATGCTGTGCTTTTATTCATATGTAATGATCTCTGGAGGAAATCC
caccaagagtgtgttatgtttccgttgtagtcatctaaactttttcttatctcagTGCTGCAATGCTGTGCTTTTATTCATATGTAATGATCTCTGGAGGAAATCCACCACCGAAGAAGTTGAAGGCAACTGAACGCCACTCATCATGATGATAA
atctaaa putative branch site (score: 3)
ctttttcttatctc CT-rich tract
taaactttttcttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatccaatattgattatcatgcttctattcaccaagagtgtgttatgtttccgttgtagtcatctaaactttttcttatctcagTGCTGCAATGCTGTGCTTTTATTCATATGTAATGATCTCTGGAGGAAATCCACCACCGAAGAAGTTGAAGGCAACTGAACGCCACTCATCATGATGATAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG