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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgctaaatagttttgatttcaattacctacaatacaagtgtaaaacatttatcagaagtcacgaaagtcatgaagaactgactgtttataattttttttatgcagGTTTTTAGAGCCCTTGTTGAAACCACTAGAGGAATTGAAGGCGCAAAAGTTGAGAACCATAAGTTTTGCGCCTCTGTACATTACCGTAATGTAGATGAGA

Basic information

species Vitis vinifera
transcript Vv00s0233g00030.t01
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv00s0233g00030.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA17G14780.1 (Glycine max), 3'ss of exon 5
gtgctaaatagttttgatttcaattacctacaatacaagtgtaaaacatttatcagaagtcacgaaagtcatgaagaactgactgtttataattttttttatgcagGTTTTTAGAGCCCTTGTTGAAACCACTAGAGGAATTGAAGGCGCAAAAGTTGAGAACCATAAGTTTTGCGCCTCTGTACATTACCGTAATGTAGATGAGA
|||| ||||  | |   | ||  |  |  | | ||  || |  ||||||| | |     || | | | | |  |||||   | || |   |     ||| |||||| ||||||||  ||| || || |  |||| ||  ||  |||| ||||||||||| || || |||||||| |  ||||| ||||||||||||||||| ||||
gtgc-aaattctctctctatctctgtctcatatta--agcgagaaacattcacctttt-tctctataattaaaaagaaactaatgatggga--cgatttcatgcagATTTTTAGAATCCTCGTAGAGATTACTAAAGATATACAAGGAGCAAAAGTTGAAAATCACAAGTTTTGTGTTTCTGTGCATTACCGTAATGTAGAAGAGA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atcagaagtcacgaaagtcatgaagaactgactgtttataattttttttatgcagGTTTTTAGAGCCCTTGTTGAAACCACTAGAGGAATTGAAGGCGCAAAAGTTGAGAACCATAAGTTTTGCGCCTCTGTACATTACCGTAATGTAGATGAGA
                         aactgac  putative branch site (score: 2)
                                         ttttttttat  putative PPT
                            tgactgtttataattt  TA-rich tract