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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgataatgctaaatatccttaactttcaattaattggtctaaacattggttctaaagttctaaattgaaagcggttattgctctttgaccaataacagTGATCCAGAGCTCATATTTCTCACGGATGGTGCCAGCAAAGGAGTAATGCAGATTTTGAATACAATTATCCGTGGTGAAAGGGATGGG

Basic information

species Vitis vinifera
transcript Vv00s0225g00130.t01
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv00s0225g00130.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: LOC_Os07g01760.1 (Oryza sativa), 3'ss of exon 3
---gtgataatgctaaatatccttaac---tttcaattaattg-----gtctaaacattggttctaaagttctaaattgaaagcggttattgctctttgaccaataacagTGATCCAGAGCTCATATTTCTCACGGATGGTGCCAGCAAAGGAGTAATGCAGATTTTGAATACAATTATCCGTGGTGAAAGGGATGGG
      || ||    | ||  | | ||   | |||| |  | |      | || |   | | | |   |  | | |||   | |   | |   || |  ||| ||  |||||||||||| || || |  ||||| ||||||||||||||||| || ||||| ||  ||||||| |||||| |   ||| || ||||||
gtcagaatgatcaagagtactcatgacaagtctcaactggtggtgttcttttacatcatagctttcttgggccatattctca-cacctgta--tcctatacctattgcagTGATCCAGAACTTATTTACCTCACAGATGGTGCCAGCAAAGGTGTGATGCAAATGCTGAATACCATTATCAGAAATGAGAGAGATGGG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|349817756|gb|FQ407745.1|FQ407745
EST:     ATAAGGAAGGAAGTGGCAGAGTTCATTGGGAGGCGTGATGGGTATCCAAG                         TGATCCAGAGCTCATATTTCTCACGGATGGTGCCAGCAAAGGAGTAATGCA
genomic: ATAAGGAAGGAAGTGGCAGAGTTCATTGGGAGGCGTGATGGGTATCCAAGgtgataatgc ... ccaataacagTGATCCAGAGCTCATATTTCTCACGGATGGTGCCAGCAAAGGAGTAATGCA
EST: gi|351019694|gb|FQ439511.1|FQ439511
EST:     ATAAGGAAGGAAGTGGCAGAGTTCATTGGGAGGCGTGATGGGTATCCAAG                         TGATCCAGAGCTCATATTTCTCACGGATGGTGCCAGCAAAGGAGTAATGCA
genomic: ATAAGGAAGGAAGTGGCAGAGTTCATTGGGAGGCGTGATGGGTATCCAAGgtgataatgc ... ccaataacagTGATCCAGAGCTCATATTTCTCACGGATGGTGCCAGCAAAGGAGTAATGCA
EST: gi|351026306|gb|FQ428318.1|FQ428318
EST:     ATAAGGAAGGAAGTGGCAGAGTTCATTGGGAGGCGTGATGGGTATCCAAG                         TGATCCAGAGCTCATATTTCTCACGGATGGTGCCAGCAAAGGAGTAATGCA
genomic: ATAAGGAAGGAAGTGGCAGAGTTCATTGGGAGGCGTGATGGGTATCCAAGgtgataatgc ... ccaataacagTGATCCAGAGCTCATATTTCTCACGGATGGTGCCAGCAAAGGAGTAATGCA
EST: gi|33409277|gb|CF214904.1|CF214904
EST:     ATAAGGAAGGAAGTGGCAGAGTTCATTGGGAGGCGTGATGGGTATCCAAG                         TGATCCAGAGCTCATATTTCTCACGGATGGTGCCAGCAAAGGAGTAATGCA
genomic: ATAAGGAAGGAAGTGGCAGAGTTCATTGGGAGGCGTGATGGGTATCCAAGgtgataatgc ... ccaataacagTGATCCAGAGCTCATATTTCTCACGGATGGTGCCAGCAAAGGAGTAATGCA
EST: gi|110389517|gb|EC954364.1|EC954364
EST:     ATAAGGAAGGACGTGGCAGAGTTCATTGGGAGGCGTGATGGGTATCCAAG                         TGATCCAGAGCTCATATTTCTCACGGATGGTGCCAGCAAAGGAGTAATGCA
genomic: ATAAGGAAGGAAGTGGCAGAGTTCATTGGGAGGCGTGATGGGTATCCAAGgtgataatgc ... ccaataacagTGATCCAGAGCTCATATTTCTCACGGATGGTGCCAGCAAAGGAGTAATGCA
EST: gi|351029331|gb|FQ436725.1|FQ436725
EST:     ATAAGGAAGGAAGTGGCAGAGTTCATTGGGAGGCGTGATGGGTATCCAAG                         TGATCCAGAGCTCATATTTCTCACGGATGGTGCCAGCAAAGGAGTAATGCA
genomic: ATAAGGAAGGAAGTGGCAGAGTTCATTGGGAGGCGTGATGGGTATCCAAGgtgataatgc ... ccaataacagTGATCCAGAGCTCATATTTCTCACGGATGGTGCCAGCAAAGGAGTAATGCA
EST: gi|349816294|gb|FQ399404.1|FQ399404
EST:     ATAAGGAAGGAAGTGGCAGAGTTCATTGGGAGGCGTGATGGGTATTCAAG                         TGATCCAGAGCTCATATTTCTCACGGATGGTGCCAGCAAAGGAGTAATGCA
genomic: ATAAGGAAGGAAGTGGCAGAGTTCATTGGGAGGCGTGATGGGTATCCAAGgtgataatgc ... ccaataacagTGATCCAGAGCTCATATTTCTCACGGATGGTGCCAGCAAAGGAGTAATGCA
EST: gi|351013592|gb|FQ429733.1|FQ429733
EST:     ATAAGGAAGGAAGTGGCAGAGTTCATTGGGAGGCGTGATGGGTATCCAAG                         TGATCCAGAGCTCATATTTCTCACGGATGGTGCCAGCAAAGGAGTAATGCA
genomic: ATAAGGAAGGAAGTGGCAGAGTTCATTGGGAGGCGTGATGGGTATCCAAGgtgataatgc ... ccaataacagTGATCCAGAGCTCATATTTCTCACGGATGGTGCCAGCAAAGGAGTAATGCA
EST: gi|56408495|gb|CX016747.1|CX016747
EST:     ATAAGGAAGGAAGTGGCAGAGTTCATTGGGAGGCGTGATGGGTATCCAAG                         TGATCCAGAGCTCATATTTCTCACGGATGGTGCCAGCAAAGGAGTAATGCA
genomic: ATAAGGAAGGAAGTGGCAGAGTTCATTGGGAGGCGTGATGGGTATCCAAGgtgataatgc ... ccaataacagTGATCCAGAGCTCATATTTCTCACGGATGGTGCCAGCAAAGGAGTAATGCA
EST: gi|352781104|gb|FQ466417.1|FQ466417
EST:     ATAAGGAAGGAAGTGGCAGAGTTCATTGGGAGGCGTGATGGGTATCCAAG                         TGATCCAGAGCTCATATTTCTCACGGATGGTGCCAGCAAAGGAGTAATGCA
genomic: ATAAGGAAGGAAGTGGCAGAGTTCATTGGGAGGCGTGATGGGTATCCAAGgtgataatgc ... ccaataacagTGATCCAGAGCTCATATTTCTCACGGATGGTGCCAGCAAAGGAGTAATGCA
EST: gi|351023886|gb|FQ423309.1|FQ423309
EST:     ATAAGGAAGGAAGTGGCAGAGTTCATTTGGAGGCGTGATGGGTATCCGAG                         TGATCCAGAGCTCATATTTCTCAC
genomic: ATAAGGAAGGAAGTGGCAGAGTTCATTGGGAGGCGTGATGGGTATCCAAGgtgataatgc ... ccaataacagTGATCCAGAGCTCATATTTCTCAC
EST: gi|351049118|gb|FQ428982.1|FQ428982
EST:     ATAAGGAAGGAAGTGGCAGAGTTCATTGGGAGGCGTGATGGGTATCCAAG                         TGATCCAGAGCTCATATTTCTCACGGATGGTGCCAGCAAAGGAGTAATGCA
genomic: ATAAGGAAGGAAGTGGCAGAGTTCATTGGGAGGCGTGATGGGTATCCAAGgtgataatgc ... ccaataacagTGATCCAGAGCTCATATTTCTCACGGATGGTGCCAGCAAAGGAGTAATGCA
EST: gi|351036343|gb|FQ458718.1|FQ458718
EST:     ATAAGGAAGGAAGTGGCAGAGTTCATTGGGAGGCGTGATGGGTATCCAAG                         TGATCCAGAGCTCATATTTCTCACGGATGGTGCCAGCAAAGGAGTAATGCA
genomic: ATAAGGAAGGAAGTGGCAGAGTTCATTGGGAGGCGTGATGGGTATCCAAGgtgataatgc ... ccaataacagTGATCCAGAGCTCATATTTCTCACGGATGGTGCCAGCAAAGGAGTAATGCA
EST: gi|351036202|gb|FQ464047.1|FQ464047
EST:     ATAAGGAAGGAAGTGGCAGAGTTCATTGGGAGGCGTGATGGGTATCCAAG                         TGATCCAGAGCTCATATTTCTCACGGATGGTGCCAGCAAAGGAGTAATGCA
genomic: ATAAGGAAGGAAGTGGCAGAGTTCATTGGGAGGCGTGATGGGTATCCAAGgtgataatgc ... ccaataacagTGATCCAGAGCTCATATTTCTCACGGATGGTGCCAGCAAAGGAGTAATGCA
EST: gi|110692196|gb|EE071162.1|EE071162
EST:     ATAAGGAAGGAAGTGGCAGAGTTCATTGGGAGGCGTGATGGGTATCCAAG                         TGATCCAGAGCTCATATTTCTCACGGATGGTGCCAGCAAAGGAGTAATGCA
genomic: ATAAGGAAGGAAGTGGCAGAGTTCATTGGGAGGCGTGATGGGTATCCAAGgtgataatgc ... ccaataacagTGATCCAGAGCTCATATTTCTCACGGATGGTGCCAGCAAAGGAGTAATGCA
EST: gi|29785300|gb|CB342168.2|CB342168
EST:     ATAAGGAAGGAAGTGGCAGAGTTCATTGGGAGGCGTGATGGGTATCCAAG                         TGATCCAGAGCTCATATTTCTCACGGATGGTGCCAGCAAAGGAGTAATGCA
genomic: ATAAGGAAGGAAGTGGCAGAGTTCATTGGGAGGCGTGATGGGTATCCAAGgtgataatgc ... ccaataacagTGATCCAGAGCTCATATTTCTCACGGATGGTGCCAGCAAAGGAGTAATGCA
EST: gi|349827710|gb|FQ422578.1|FQ422578
EST:     ATAAGGAAGGAAGTGGCAGAGTTCATTTGGAGGCGTGATGGGTACCCAAG                         TGATCCAGAGCTCATATTTCTCACGGATGGTGCCAGCAAAGGAGTAAATGC
genomic: ATAAGGAAGGAAGTGGCAGAGTTCATTGGGAGGCGTGATGGGTATCCAAGgtgataatgc ... ccaataacagTGATCCAGAGCTCATATTTCTCACGGATGGTGCCAGCAAAGGAGTAA-TGC
EST: gi|351018395|gb|FQ439207.1|FQ439207
EST:     ATAAGGAAGGAAGTGGCAGAGTTCATTGGGAGGCGTGATGGGTATCCAAG                         TGATCCAGAGCTCATATTTCTCACGGATGGTGCCAGCAAAGGAGTAATGCA
genomic: ATAAGGAAGGAAGTGGCAGAGTTCATTGGGAGGCGTGATGGGTATCCAAGgtgataatgc ... ccaataacagTGATCCAGAGCTCATATTTCTCACGGATGGTGCCAGCAAAGGAGTAATGCA
EST: gi|161712960|gb|FC062086.1|FC062086
EST:     ATAAGGAAGGAAGTGGCAGAGTTCATTGGGAGGCGTGATGGGTATCCAAG                         TGATCCAGAGCTCATATTTCTCACGGATGGTGCCAGCAAAGGAGTAATGCA
genomic: ATAAGGAAGGAAGTGGCAGAGTTCATTGGGAGGCGTGATGGGTATCCAAGgtgataatgc ... ccaataacagTGATCCAGAGCTCATATTTCTCACGGATGGTGCCAGCAAAGGAGTAATGCA
EST: gi|349819777|gb|FQ404499.1|FQ404499
EST:     ATAAGGAAGGAAGTGGCAGAGTTCATTGGGAGGCGTGATGGGTATCCAAG                         TGATCCAGAGCTCATATTTCTCACGGATGGTGCCAGCAAAGGAGTAATGCA
genomic: ATAAGGAAGGAAGTGGCAGAGTTCATTGGGAGGCGTGATGGGTATCCAAGgtgataatgc ... ccaataacagTGATCCAGAGCTCATATTTCTCACGGATGGTGCCAGCAAAGGAGTAATGCA
EST: gi|27755408|gb|CB036163.1|CB036163
EST:     ATAAGGAAGGAAGTGGCAGAGTTCATTGGGAGGCGTGATGGGTATCCAAG                         TGATCCAGAGCTCATATTTCTCACGGATGGTGCCAGCAAAGGAGTAATGCA
genomic: ATAAGGAAGGAAGTGGCAGAGTTCATTGGGAGGCGTGATGGGTATCCAAGgtgataatgc ... ccaataacagTGATCCAGAGCTCATATTTCTCACGGATGGTGCCAGCAAAGGAGTAATGCA
EST: gi|27755104|gb|CB035859.1|CB035859
EST:     ATAAGGAAGGAAGTGGCAGAGTTCATTGGGAGGCGTGATGGGTATCCAAG                         TGATCCAGAGCTCATATTTCTCACGGATGGTGCCAGCAAAGGAGTAATGCA
genomic: ATAAGGAAGGAAGTGGCAGAGTTCATTGGGAGGCGTGATGGGTATCCAAGgtgataatgc ... ccaataacagTGATCCAGAGCTCATATTTCTCACGGATGGTGCCAGCAAAGGAGTAATGCA
EST: gi|349833249|gb|FQ416627.1|FQ416627
EST:     ATAAGGAAGGAAGTGGCAGAGTTCATTGGGAGGCGTGATGGGTATCCAAG                         TGATCCAGAGCTCATATTTCTCACGGATGGTGCCAGCAAAGGAGTAATGCA
genomic: ATAAGGAAGGAAGTGGCAGAGTTCATTGGGAGGCGTGATGGGTATCCAAGgtgataatgc ... ccaataacagTGATCCAGAGCTCATATTTCTCACGGATGGTGCCAGCAAAGGAGTAATGCA
EST: gi|27582523|gb|CB005218.1|CB005218
EST:     ATAAGGAAGGAAGTGGCAGAGTTCATTGGGAGGCGTGATGGGTATCCAAG                         TGATCCAGAGCTCATATTTCTCACGGATGGTGCCAGCAAAGGAGTAATGCA
genomic: ATAAGGAAGGAAGTGGCAGAGTTCATTGGGAGGCGTGATGGGTATCCAAGgtgataatgc ... ccaataacagTGATCCAGAGCTCATATTTCTCACGGATGGTGCCAGCAAAGGAGTAATGCA
EST: gi|349807317|gb|FQ401309.1|FQ401309
EST:     ATAAGGAAGGAAGTGGCAGAGTTCATTGGGAGGCGTGATGGGTATCCAAG                         TGATCCAGAGCTCATATTTCTCACGGATGGTGCCAGCAAAGGAGTAATGCA
genomic: ATAAGGAAGGAAGTGGCAGAGTTCATTGGGAGGCGTGATGGGTATCCAAGgtgataatgc ... ccaataacagTGATCCAGAGCTCATATTTCTCACGGATGGTGCCAGCAAAGGAGTAATGCA
EST: gi|29785236|gb|CB342047.2|CB342047
EST:     ATAAGGAAGGAAGTGGCAGAGTTCATTGGGAGGCGTGATGGGTATCCAAG                         TGATCCAGAGCTCATATTTCTCACGGATGGTGCCAGCAAAGGAGTAATGCA
genomic: ATAAGGAAGGAAGTGGCAGAGTTCATTGGGAGGCGTGATGGGTATCCAAGgtgataatgc ... ccaataacagTGATCCAGAGCTCATATTTCTCACGGATGGTGCCAGCAAAGGAGTAATGCA
EST: gi|71856263|gb|DT005318.1|DT005318
EST:     ATAAGGAAGGAAGTGGCAGAGTTCATTGGGAGGCGTGATGGGTATCCAAG                         TGATCCAGAGCTCATATTTCTCACGGATGGTGCCAGCAAAGGAGTAATGCA
genomic: ATAAGGAAGGAAGTGGCAGAGTTCATTGGGAGGCGTGATGGGTATCCAAGgtgataatgc ... ccaataacagTGATCCAGAGCTCATATTTCTCACGGATGGTGCCAGCAAAGGAGTAATGCA
EST: gi|77584537|gb|DV221338.1|DV221338
EST:     ATAAGGAAGGAAGTGGCAGAGTTCATTGGGAGGCGTGATGGGTATCCAAG                         TGATCCAGAGCTCATATTTCTCACGGATGGTGCCAGCAAAGGAGTAATGCA
genomic: ATAAGGAAGGAAGTGGCAGAGTTCATTGGGAGGCGTGATGGGTATCCAAGgtgataatgc ... ccaataacagTGATCCAGAGCTCATATTTCTCACGGATGGTGCCAGCAAAGGAGTAATGCA
EST: gi|349808113|gb|FQ403300.1|FQ403300
EST:     ATAAGGAAGGAAGTGGCAGAGTTCATTGGGAGGCGTGATGGGTATCCAAG                         TGATCCAGAGCTCATATTTCTCACGGATGGTGCCAGCAAAGGAGTAATGCA
genomic: ATAAGGAAGGAAGTGGCAGAGTTCATTGGGAGGCGTGATGGGTATCCAAGgtgataatgc ... ccaataacagTGATCCAGAGCTCATATTTCTCACGGATGGTGCCAGCAAAGGAGTAATGCA
EST: gi|27578703|gb|CB001398.1|CB001398
EST:     ATAAGGAAGGAAGTGGCAGAGTTCATTGGGAGGCGTGATGGGTATCCAAG                         TGATCCAGAGCTCATATTTCTCACGGATGGTGCCAGCAAAGGAGTAATGCA
genomic: ATAAGGAAGGAAGTGGCAGAGTTCATTGGGAGGCGTGATGGGTATCCAAGgtgataatgc ... ccaataacagTGATCCAGAGCTCATATTTCTCACGGATGGTGCCAGCAAAGGAGTAATGCA
EST: gi|110689868|gb|EE066470.1|EE066470
EST:     ATAAGGAAGGAAGTGGCAGAGTTCATTGGGAGGCGTGATGGGTATCCAAG                         TGATCCAGAGCTCATATTTCTCACGGATGGTGCCAGCAAAGGAGTAATGCA
genomic: ATAAGGAAGGAAGTGGCAGAGTTCATTGGGAGGCGTGATGGGTATCCAAGgtgataatgc ... ccaataacagTGATCCAGAGCTCATATTTCTCACGGATGGTGCCAGCAAAGGAGTAATGCA
EST: gi|351049355|gb|FQ429098.1|FQ429098
EST:     ATAAGGAAGGAAGTGGCAGAGTTCATTTGGAGGCGTGATGGGTATCCAAG                         TGATCCAGAGCTCATATTTCTCACGGATGGTGCCAGCAAAGGAGTAATGCA
genomic: ATAAGGAAGGAAGTGGCAGAGTTCATTGGGAGGCGTGATGGGTATCCAAGgtgataatgc ... ccaataacagTGATCCAGAGCTCATATTTCTCACGGATGGTGCCAGCAAAGGAGTAATGCA
EST: gi|351048786|gb|FQ449654.1|FQ449654
EST:     ATAAGGAAGGAAGTGGCAGAGTTCATTGGGAGGCGTGATGGGTATCCAAG                         TGATCCAGAGCTCATATTTCTCACGGATGGTGCCAGCAAAGGAGTAATGCA
genomic: ATAAGGAAGGAAGTGGCAGAGTTCATTGGGAGGCGTGATGGGTATCCAAGgtgataatgc ... ccaataacagTGATCCAGAGCTCATATTTCTCACGGATGGTGCCAGCAAAGGAGTAATGCA
EST: gi|71861897|gb|DT010952.1|DT010952
EST:     ATAAGGAAGGAAGTGGCAGAGTTCATTGGGAGGCGTGATGGGTATCCAAG                         TGATCCAGAGCTCATATTTCTCACGGATGGTGCCAGCAAAGGAGTAATGCA
genomic: ATAAGGAAGGAAGTGGCAGAGTTCATTGGGAGGCGTGATGGGTATCCAAGgtgataatgc ... ccaataacagTGATCCAGAGCTCATATTTCTCACGGATGGTGCCAGCAAAGGAGTAATGCA
EST: gi|351040447|gb|FQ434580.1|FQ434580
EST:     ATAAGGAAGGAAGTGGCAGAGTTCATTGGGAGGCGTGATGGGTATCCAAG                         TGATCCAGAGCTCATATTTCTCACGGATGGTGCCAGCAAAGGAGTAATGCA
genomic: ATAAGGAAGGAAGTGGCAGAGTTCATTGGGAGGCGTGATGGGTATCCAAGgtgataatgc ... ccaataacagTGATCCAGAGCTCATATTTCTCACGGATGGTGCCAGCAAAGGAGTAATGCA
EST: gi|161706058|gb|FC056227.1|FC056227
EST:     ATAAGGAAGGAAGTGGCAGAGTTCATTGGGAGGCGTGATGGGTATCCAAG                         TGATCCAGAGCTCATATTTCTCACGGATGGTGCCAGCAAAGGAGTAATGCA
genomic: ATAAGGAAGGAAGTGGCAGAGTTCATTGGGAGGCGTGATGGGTATCCAAGgtgataatgc ... ccaataacagTGATCCAGAGCTCATATTTCTCACGGATGGTGCCAGCAAAGGAGTAATGCA
EST: gi|351046382|gb|FQ452998.1|FQ452998
EST:     ATAAGGAAGGAAGTGGCAGAGTTCATTTGGAGGCGTGATGGGTACCCAAG                         TGATCCAGAGCTCATATTTCTCACGGATGGTGCCAGCAAAGGAGTAATGCA
genomic: ATAAGGAAGGAAGTGGCAGAGTTCATTGGGAGGCGTGATGGGTATCCAAGgtgataatgc ... ccaataacagTGATCCAGAGCTCATATTTCTCACGGATGGTGCCAGCAAAGGAGTAATGCA
EST: gi|349820046|gb|FQ404768.1|FQ404768
EST:     ATAAGGAAGGAAGTGGCAGAGTTCATTGGGAGGCGTGATGGGTATCCAAG                         TGATCCAGAGCTCATATTTCTCACGGATGGTGCCAGCAAAGGAGTAATGCA
genomic: ATAAGGAAGGAAGTGGCAGAGTTCATTGGGAGGCGTGATGGGTATCCAAGgtgataatgc ... ccaataacagTGATCCAGAGCTCATATTTCTCACGGATGGTGCCAGCAAAGGAGTAATGCA
EST: gi|349808629|gb|FQ405773.1|FQ405773
EST:     ATAAGGAAGGAAGTGGCAGAGTTCATTGGGAGGCGTGATGGGTATCCAAG                         TGATCCAGAGCTCATATTTCTCACGGATGGTGCCAGCAAAGGAGTAATGCA
genomic: ATAAGGAAGGAAGTGGCAGAGTTCATTGGGAGGCGTGATGGGTATCCAAGgtgataatgc ... ccaataacagTGATCCAGAGCTCATATTTCTCACGGATGGTGCCAGCAAAGGAGTAATGCA
EST: gi|349809424|gb|FQ411922.1|FQ411922
EST:     ATAAGGAAGGAAGTGGCAGAGTTCATTGGGAGGCGTGATGGGTATCCAAG                         TGATCCAGAGCTCATATTTCTCACGGATGGTGCCAGCAAAGGAGTAATGCA
genomic: ATAAGGAAGGAAGTGGCAGAGTTCATTGGGAGGCGTGATGGGTATCCAAGgtgataatgc ... ccaataacagTGATCCAGAGCTCATATTTCTCACGGATGGTGCCAGCAAAGGAGTAATGCA
EST: gi|71857747|gb|DT006802.1|DT006802
EST:     ATAAGGAAGGAAGTGGCAGAGTTCATTGGGAGGCGTGATGGGTATCCAAG                         TGATCCAGAGCTCATATTTCTCACGGATGGTGCCAGCAAAGGAGTAA
genomic: ATAAGGAAGGAAGTGGCAGAGTTCATTGGGAGGCGTGATGGGTATCCAAGgtgataatgc ... ccaataacagTGATCCAGAGCTCATATTTCTCACGGATGGTGCCAGCAAAGGAGTAA
EST: gi|349821055|gb|FQ404308.1|FQ404308
EST:     ATAAGGAAGGAAGTGGCAGAGTTCATTGGGAGGCGTGATGGGTATCCAAG                         TGATCCAGAGCTCATATTTCTCACGGATGGTGCCAGCAAAGGAGTAATGCA
genomic: ATAAGGAAGGAAGTGGCAGAGTTCATTGGGAGGCGTGATGGGTATCCAAGgtgataatgc ... ccaataacagTGATCCAGAGCTCATATTTCTCACGGATGGTGCCAGCAAAGGAGTAATGCA
EST: gi|30251568|gb|CB969301.1|CB969301
EST:     ATAAGGAAGGAAGTGGCAGAGTTCATTGGGAGGCGTGATGGGTATCCAAG                         TGATCCAGAGCTCATATTTCTCACGGATGGTGCCAGCAAAGGAGTAATGCA
genomic: ATAAGGAAGGAAGTGGCAGAGTTCATTGGGAGGCGTGATGGGTATCCAAGgtgataatgc ... ccaataacagTGATCCAGAGCTCATATTTCTCACGGATGGTGCCAGCAAAGGAGTAATGCA
EST: gi|18459105|gb|BM437383.1|BM437383
EST:     ATAAGGAAGGAAGTGGCAGAGTTCATTGGGAGGCGTGATGGGTATCCAAG                         TGATCCAGAGCTCATATTTCTCACGGATGGTGCCAGCAAAGGAGTAATGCA
genomic: ATAAGGAAGGAAGTGGCAGAGTTCATTGGGAGGCGTGATGGGTATCCAAGgtgataatgc ... ccaataacagTGATCCAGAGCTCATATTTCTCACGGATGGTGCCAGCAAAGGAGTAATGCA
EST: gi|32250126|gb|CD715945.1|CD715945
EST:     ATAAGGAAGGAAGTGGCAGAGTTCATTGGGAGGCGTGATGGGTATCCAAG                         TGATCCAGAGCTCATATTTCTCACGGATGGTGCCAGCAAAGGAGTAATGCA
genomic: ATAAGGAAGGAAGTGGCAGAGTTCATTGGGAGGCGTGATGGGTATCCAAGgtgataatgc ... ccaataacagTGATCCAGAGCTCATATTTCTCACGGATGGTGCCAGCAAAGGAGTAATGCA
EST: gi|27578701|gb|CB001396.1|CB001396
EST:     ATAAGGAAGGAAGTGGCAGAGTTCATTGGGAGGCGTGATGGGTATCCAAG                         TGATCCAGAGCTCATATTTCTCACGGATGGTGCCAGCAAAGGAGTAATGCA
genomic: ATAAGGAAGGAAGTGGCAGAGTTCATTGGGAGGCGTGATGGGTATCCAAGgtgataatgc ... ccaataacagTGATCCAGAGCTCATATTTCTCACGGATGGTGCCAGCAAAGGAGTAATGCA
EST: gi|349808686|gb|FQ405830.1|FQ405830
EST:     ATAAGGAAGGAAGTGGCAGAGTTCATTGGGAGGCGTGATGGGTATCCAAG                         TGATCCAGAGCTCATATTTCTCACGGATGGTGCCAGCAAAGGAGTAATGCA
genomic: ATAAGGAAGGAAGTGGCAGAGTTCATTGGGAGGCGTGATGGGTATCCAAGgtgataatgc ... ccaataacagTGATCCAGAGCTCATATTTCTCACGGATGGTGCCAGCAAAGGAGTAATGCA
EST: gi|349821509|gb|FQ408068.1|FQ408068
EST:     ATAAGGAAGGAAGTGGCAGAGTTCATTGGGAGGCGTGATGGGTATCCAAG                         TGATCCAGAGCTCATATTTCTCACGGATGGTGCCAGCAAAGGAGTAATGCA
genomic: ATAAGGAAGGAAGTGGCAGAGTTCATTGGGAGGCGTGATGGGTATCCAAGgtgataatgc ... ccaataacagTGATCCAGAGCTCATATTTCTCACGGATGGTGCCAGCAAAGGAGTAATGCA
EST: gi|349830529|gb|FQ416839.1|FQ416839
EST:     ATAAGGAAGGAAGTGGCAGAGTTCATTTGGAGGCGTGATGGGTACCCAAG                         TGATCCAGAGCTCATATTTCTCACGGATGGTGCCAGCAAAGGAGTAATGCA
genomic: ATAAGGAAGGAAGTGGCAGAGTTCATTGGGAGGCGTGATGGGTATCCAAGgtgataatgc ... ccaataacagTGATCCAGAGCTCATATTTCTCACGGATGGTGCCAGCAAAGGAGTAATGCA
EST: gi|349823894|gb|FQ415305.1|FQ415305
EST:     ATAAGGAAGGAAGTGGCAGAGTTCATTGGGAGGCGTGATGGGTATCCAAG                         TGATCCAGAGCTCATATTTCTCACGGATGGTGCCAGCAAAGGAGTAATGCA
genomic: ATAAGGAAGGAAGTGGCAGAGTTCATTGGGAGGCGTGATGGGTATCCAAGgtgataatgc ... ccaataacagTGATCCAGAGCTCATATTTCTCACGGATGGTGCCAGCAAAGGAGTAATGCA
EST: gi|110707090|gb|EE083187.1|EE083187
EST:     ATAAGGAAGGAAGTGGCAGAGTTCATTGGGAGGCGTGATGGGTATCCAAG                         TGATCCAGAGCTCATATTTCTCACGGATGGTGCCAGCAAAGGAGTAATGCA
genomic: ATAAGGAAGGAAGTGGCAGAGTTCATTGGGAGGCGTGATGGGTATCCAAGgtgataatgc ... ccaataacagTGATCCAGAGCTCATATTTCTCACGGATGGTGCCAGCAAAGGAGTAATGCA
EST: gi|351012478|gb|FQ427079.1|FQ427079
EST:     ATAAGGAAGGAAGTGGCAGAGTTCATTGGGAGGCGTGATGGGTATCCAAG                         TGATCCAGAGCTCATATTTCTCACGGATGGTGCCAGCAAAGGAGTAATGCA
genomic: ATAAGGAAGGAAGTGGCAGAGTTCATTGGGAGGCGTGATGGGTATCCAAGgtgataatgc ... ccaataacagTGATCCAGAGCTCATATTTCTCACGGATGGTGCCAGCAAAGGAGTAATGCA
EST: gi|352794077|gb|FQ479319.1|FQ479319
EST:     ATAAGGAAGGAAGTGGCAGAGTTCATTGGGAGGCGTGATGGGTATCCAAG                         TGATCCAGGGCTCATATTTCTCACGGATGGTGCCAGCAAAGGAGTAATGCA
genomic: ATAAGGAAGGAAGTGGCAGAGTTCATTGGGAGGCGTGATGGGTATCCAAGgtgataatgc ... ccaataacagTGATCCAGAGCTCATATTTCTCACGGATGGTGCCAGCAAAGGAGTAATGCA
EST: gi|351029614|gb|FQ427454.1|FQ427454
EST:     ATAAGGAAGGAAGTGGCAGAGTTCATTTGGAGGCGTGATGGGTATCCAAG                         TGATCCAGAGCTCATATTTCTCACGGATGGTGCCAGCAAAGGAGTAATGCA
genomic: ATAAGGAAGGAAGTGGCAGAGTTCATTGGGAGGCGTGATGGGTATCCAAGgtgataatgc ... ccaataacagTGATCCAGAGCTCATATTTCTCACGGATGGTGCCAGCAAAGGAGTAATGCA
EST: gi|349811946|gb|FQ410743.1|FQ410743
EST:     ATAAGGAAGGAAGTGGCACAGTTCATTGGGAGGCGTGATGGGTATCCAAG                         TGATCCAGAGCTCATATTTCTCACGGATGGTGCCAGCAAAGGAGTAATGCA
genomic: ATAAGGAAGGAAGTGGCAGAGTTCATTGGGAGGCGTGATGGGTATCCAAGgtgataatgc ... ccaataacagTGATCCAGAGCTCATATTTCTCACGGATGGTGCCAGCAAAGGAGTAATGCA
EST: gi|351029308|gb|FQ436702.1|FQ436702
EST:     ATAAGGAAGGAAGTGGCAGAGTTCATTTGGAGGCGTGATGGGTACCCAAG                         TGATCCAGAGCTCATATTTCTCACGGATGGTGCCAGCAAAGGAGTAAATGC
genomic: ATAAGGAAGGAAGTGGCAGAGTTCATTGGGAGGCGTGATGGGTATCCAAGgtgataatgc ... ccaataacagTGATCCAGAGCTCATATTTCTCACGGATGGTGCCAGCAAAGGAGTAA-TGC
EST: gi|30127296|gb|CB912635.1|CB912635
EST:     ATAAGGAAGGAAGTGGCAGAGTTCATTGGGAGGCGTGATGGGTATCCAAG                         TGATCCAGAGCTCATATTTCTCACGGATGGTGCCAGCAAAGGAGTAATGCA
genomic: ATAAGGAAGGAAGTGGCAGAGTTCATTGGGAGGCGTGATGGGTATCCAAGgtgataatgc ... ccaataacagTGATCCAGAGCTCATATTTCTCACGGATGGTGCCAGCAAAGGAGTAATGCA
EST: gi|352769573|gb|FQ468501.1|FQ468501
EST:     ATAAGGAAGGAAGTGGCAGAGTTCATTGGGAGGCGTGATGGGTATCCAAG                         TGATCCAGAGCTCATATTTCTCACGGATGGTGCCAGCAAAGGAGTAATGCA
genomic: ATAAGGAAGGAAGTGGCAGAGTTCATTGGGAGGCGTGATGGGTATCCAAGgtgataatgc ... ccaataacagTGATCCAGAGCTCATATTTCTCACGGATGGTGCCAGCAAAGGAGTAATGCA
EST: gi|349832657|gb|FQ422015.1|FQ422015
EST:     ATAAGGAAGGAAGTGGCAGAGTTCATTGGGAGGCGTGATGGGTATCCAAG                         TGATCCAGAGCTCATATTTCTCACGGATGGTGCCAGCAAAGGAGTAATGCA
genomic: ATAAGGAAGGAAGTGGCAGAGTTCATTGGGAGGCGTGATGGGTATCCAAGgtgataatgc ... ccaataacagTGATCCAGAGCTCATATTTCTCACGGATGGTGCCAGCAAAGGAGTAATGCA
EST: gi|30251605|gb|CB969338.1|CB969338
EST:     ATAAGGAAGGAAGTGGCAGAGTTCATTGGGAGGCGTGATGGGTATCCAAG                         TGATCCAGAGCTCATATTTCTCACGGATGGTGCCAGCAAAGGAGTAATGCA
genomic: ATAAGGAAGGAAGTGGCAGAGTTCATTGGGAGGCGTGATGGGTATCCAAGgtgataatgc ... ccaataacagTGATCCAGAGCTCATATTTCTCACGGATGGTGCCAGCAAAGGAGTAATGCA
EST: gi|351024976|gb|FQ433393.1|FQ433393
EST:     ATAAGGAAGGAAGTGGCAGAGTTCATTGGGAGGCGTGATGGGTATCCAAG                         TGATCCAGAGCTCATATTTCTCACGGATGGTGCCAGCAAAGGAGTAATGCA
genomic: ATAAGGAAGGAAGTGGCAGAGTTCATTGGGAGGCGTGATGGGTATCCAAGgtgataatgc ... ccaataacagTGATCCAGAGCTCATATTTCTCACGGATGGTGCCAGCAAAGGAGTAATGCA
EST: gi|294965073|gb|GW838876.1|GW838876
EST:     ATAAGGAAGGAAGTGGCAGAGTTCATCGGGAGGCGTGATGGGTATCCAAG                         TGATCCAGAGCTCATATTTCTCACGGATGGTGCCAGCAAA
genomic: ATAAGGAAGGAAGTGGCAGAGTTCATTGGGAGGCGTGATGGGTATCCAAGgtgataatgc ... ccaataacagTGATCCAGAGCTCATATTTCTCACGGATGGTGCCAGCAAA
EST: gi|110698273|gb|EE075615.1|EE075615
EST:     ATAAGGAAGGAAGTGGCAGAGTTCATTGGGAGGCGTGATGGGTATCCAAG                         TGATCCAGAGCTCATATTTCTCACGGATGGTGCCAGCAAAGGAGTAATGCA
genomic: ATAAGGAAGGAAGTGGCAGAGTTCATTGGGAGGCGTGATGGGTATCCAAGgtgataatgc ... ccaataacagTGATCCAGAGCTCATATTTCTCACGGATGGTGCCAGCAAAGGAGTAATGCA
EST: gi|351032478|gb|FQ458843.1|FQ458843
EST:     ATAAGGAAGGAAGTGGCAGAGTTCATTGGGAGGCGTGATGGGTATCCAAG                         TGATCCAGAGCTCATATTTCTCACGGATGGTGCCAGCAAAGGAGTAATGCA
genomic: ATAAGGAAGGAAGTGGCAGAGTTCATTGGGAGGCGTGATGGGTATCCAAGgtgataatgc ... ccaataacagTGATCCAGAGCTCATATTTCTCACGGATGGTGCCAGCAAAGGAGTAATGCA
EST: gi|351054831|gb|FQ462861.1|FQ462861
EST:     ATAAGGAAGGAAGTGGCAGAGTTCATTGGGAGGCGTGATGGGTATCCAAG                         TGATCCAGAGCTCATATTTCTCACGGATGGTGCCAGCAAAGGAGTAATGCA
genomic: ATAAGGAAGGAAGTGGCAGAGTTCATTGGGAGGCGTGATGGGTATCCAAGgtgataatgc ... ccaataacagTGATCCAGAGCTCATATTTCTCACGGATGGTGCCAGCAAAGGAGTAATGCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cattggttctaaagttctaaattgaaagcggttattgctctttgaccaataacagTGATCCAGAGCTCATATTTCTCACGGATGGTGCCAGCAAAGGAGTAATGCAGATTTTGAATACAATTATCCGTGGTGAAAGGGATGGG
         taaagttctaaatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtgataatgctaaatatccttaactttcaattaattggtctaaacattggttctaaagttctaaattgaaagcggttattgctctttgaccaataacagTGATCCAGAGCTCATATTTCTCACGGATGGTGCCAGCAAAGGAGTAATGCAGATTTTGAATACAATTATCCGTGGTGAAAGGGATGGG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAGAT