Sequence
atgc intronic sequence ATGC exonic sequence...agagtagttgcattaagatctacatgaatagaataaacatcaattcctcaacaagaacgtgcagtcaatgatgagaatttattttggcatatatctacagGTCCAGAAGCACTTCCAATGGAATTCACCTCCCATCAGATATGATGCATTCCATATGATCATGTATGAGCTCTGGTTGCGCCACCAAGTGATTAAGTATT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv00s0218g00090.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA01G02630.1 (Glycine max), 3'ss of exon 5
-----agagtagttgcattaagatctacatgaatagaataaacatcaattcctcaacaagaacgtgcagtcaatgatgagaatttattttggcatatatctacagGTCCAGAAGCACTTCCAATGGAATTCACCTCCCATCAGATATGATGCATTCCATATGATCATGTATGAGCTCTGGTTGCGCCACCAAGTGATTAAGTATT
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gcccaaatattttatcaccagtggttgtttggtcggtagaattttcgttgct--aattgaattctgttggagcttacataaagttgctt---catgttttatcagGTTCAGAAACACTTCCAATGGAATTCGCCCCCAATCAGATTTGATGCTTTCCATTTGGTTATGTATGACCTCTGGTTACGCCATCACACGATCAAATACT
upper sequence: Vv00s0218g00090.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA09G33330.1 (Glycine max), 3'ss of exon 5
--agagtagttgcatta--agatctacatgaatagaataaacatcaattcctcaacaagaacgtgcagtcaatgatgagaatttattttggcatatatctacagGTCCAGAAGCACTTCCAATGGAATTCACCTCCCATCAGATATGATGCATTCCATATGATCATGTATGAGCTCTGGTTGCGCCACCAAGTGATTAAGTATT
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cagtggttgtttggttggtagaatttttcgttgctaattga-attatttgttgatatgtaatatgttggagctctcataaagttgctt---catgttctatcagGTTCAGAAACACTTCCAATGGAATTCGCCCTCAATCAGATTTGATGCTTTCCATTTGGTTATGTATGACCTCTGGTTACGCCATCACACGATCAAATACT
upper sequence: Vv00s0218g00090.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: AT4G38040.1 (Arabidopsis thaliana), 3'ss of exon 4
agagtagttgcattaagatctacatgaatagaataaacatcaattcctcaacaagaacgtgcagtcaatgatgagaatttattttggcatatatctacagGTCCAGAAGCACTTCCAATGGAATTCACCTCCCATCAGATATGATGCATTCCATATGATCATGTATGAGCTCTGGTTGCGCCACCAAGTGATTAAGTATT
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---------------------------gtaaagagaatttcaccatcttatccagtat-tgtatacaa-gaagctgattggttttgttgt---tgtgcagGTGCAGAAGCATTTTCAATGGAACTCACCTCCAGTCAAATTCGACGCATTTCACATGATCATGTATGAACTATGGTTACGCCACCATGTCGTCAAGTACT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.cctcaacaagaacgtgcagtcaatgatgagaatttattttggcatatatctacagGTCCAGAAGCACTTCCAATGGAATTCACCTCCCATCAGATATGATGCATTCCATATGATCATGTATGAGCTCTGGTTGCGCCACCAAGTGATTAAGTATT
atgagaatttatttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
agagtagttgcattaagatctacatgaatagaataaacatcaattcctcaacaagaacgtgcagtcaatgatgagaatttattttggcatatatctacagGTCCAGAAGCACTTCCAATGGAATTCACCTCCCATCAGATATGATGCATTCCATATGATCATGTATGAGCTCTGGTTGCGCCACCAAGTGATTAAGTATT
- - - - - - - - - -ctacatg
- - - - - - - - - - - - - - - gaataaa
- - - - - - - - - - - - - - - - - - - - - - -cctcaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcagtca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gatgagaa