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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ccaggcgctgtgttttctcttcttctttctcctttcctttttttcagcaggtaatagtgtgtcagctttgataaatgtttaatcacccttggttatgcagTGAACGTGCAGTCTTTATCTGGCTCGCCTGCAAATTTTCAAGTTTACACTGCACTATTAAAAGCTCATGAAAGAATTATGGCACTTGATCTTCCTCATGG

Basic information

species Vitis vinifera
transcript Vv00s0211g00120.t01
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv00s0211g00120.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: LOC_Os03g52840.2 (Oryza sativa), 3'ss of exon 5
ccaggcgctgtgttttct---cttcttctttctcctttcctttttttcagcaggtaatagtgtgtcagctttgataaatgtttaatcacccttggttatgcagTGAACGTGCAGTCTTTATCTGGCTCGCCTGCAAATTTTCAAGTTTACACTGCACTATTAAAAGCTCATGAAAGAATTATGGCACTTGATCTTCCTCATGG
     |      || |||    | ||| ||       |  |  |||||       || |  ||| ||   |   |  |     |||  |   |   | ||||||||| |||||  || |||| || || ||||| || || || ||||||||||| ||||| ||| | ||||| ||||| |||||  | ||||||||||||||
ttgtacttaaatttatctagaatacttattctcaaaattttagttttctttctccaaaaaggtggcattctaacttgacaaccaatttc---tacctctgcagTGAATGTGCAACCTCTATCAGGGTCACCTGCCAACTTCCATGTTTACACTGCCCTATTGAAACCACATGAGAGAATCATGGCTTTGGATCTTCCTCATGG

upper sequence: Vv00s0211g00120.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA08G37270.1 (Glycine max), 3'ss of exon 5
ccaggcgctgt-gttttctcttcttctttc-tcctttcctttttttcagcaggtaatagtgtgtcagctttgataaatgtttaatcacccttggttatgcagTGAACGTGCAGTCTTTATCTGGCTCGCCTGCAAATTTTCAAGTTTACACTGCACTATTAAAAGCTCATGAAAGAATTATGGCACTTGATCTTCCTCATGG
  |  | |||  |  || ||||  | ||   |   | | ||      |  ||||  | || |      | |||||  |   |  |  |||||  ||  ||||||||||||||| || | || || || ||||||||||| || |||||||||||| |  | ||| ||||||||||||| |||||||||||||||||||||||
ataatcactgaagagttttcttgatgttcaatagatccattaaaagtattaggtgtttgtttaagtcttctgatatgtcactgttaccccttaatt--gcagTGAACGTGCAGCCTCTGTCAGGGTCTCCTGCAAATTTCCACGTTTACACTGCATTGCTTAAACCTCATGAAAGAATCATGGCACTTGATCTTCCTCATGG

upper sequence: Vv00s0211g00120.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA18G27710.1 (Glycine max), 3'ss of exon 6
ccaggcgct---gtgttttctcttcttctttctcctttcctttttttcagcaggtaatagtgtgtcagctttgataaatgtt-taatcacccttggttatgcagTGAACGTGCAGTCTTTATCTGGCTCGCCTGCAAATTTTCAAGTTTACACTGCACTATTAAAAGCTCATGAAAGAATTATGGCACTTGATCTTCCTCATGG
  |  | ||   | | ||| ||    || |  |   ||| ||   ||  | |   |||  |||   ||  ||   | |||      | |||| |   | |||||||||||||||| || | || || || ||||||||||| || || ||||||||| |  | ||| ||||||||||||| |||||||||||||||||||||||
--aatcacttaagagctttttcaatgtccta-tagattcattaaattttgaaataaattttgtccaagtcttctgatatgccactgttaccccttaat-tgcagTGAACGTGCAGCCTCTGTCAGGGTCTCCTGCAAATTTCCATGTCTACACTGCATTGCTTAAACCTCATGAAAGAATCATGGCACTTGATCTTCCTCATGG

upper sequence: Vv00s0211g00120.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA09G33480.1 (Glycine max), 3'ss of exon 5
ccaggcgctgt-gttttctcttcttctttctcctttcctttttttcagcaggtaatagtgtgtcagctttgataaatgt-ttaatcacccttggttatgcagTGAACGTGCAGTCTTTATCTGGCTCGCCTGCAAATTTTCAAGTTTACACTGCACTATTAAAAGCTCATGAAAGAATTATGGCACTTGATCTTCCTCATGG
   | |    |    || |||     |   |   ||  |||||   |  |  || ||   ||   | ||    |  ||| ||  | |||| |  || |||||||||||||||| || | ||||| ||  |||| ||||||||||||||||||||| |  ||||| ||||||| ||||| |||| ||||||||| || |||||
-atgacatcattagcttttctaaggttgagtatattaatttttaaaaatatatattacattgcatgtttcctcatttgtcttttttacccctaatt-tgcagTGAACGTGCAGCCTCTGTCTGGTTCTTCTGCCAATTTTCAAGTTTACACTGCATTGCTAAAACCTCATGATAGAATCATGGGACTTGATCTACCACATGG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351018888|gb|FQ425790.1|FQ425790
EST:     CCAGAAGCGTGCTTTGGAAGCATTTCGGTTGGATCCTGCAAAATGGGGAG                         TGAACGTGCAGTCTTTATCTGGCTCGCCTGCAAATTTTCAAGTTTACACTG
genomic: CCAGAAGCGTGCTTTGGAAGCATTTCGGTTGGATCCTGCAAAATGGGGAGgtaaatacat ... ggttatgcagTGAACGTGCAGTCTTTATCTGGCTCGCCTGCAAATTTTCAAGTTTACACTG
EST: gi|352768987|gb|FQ468178.1|FQ468178
EST:     CCAGAAGCGTGCTTTGGAAGCATTTCGGTTGGATCCTGCAAAATGGGGAG                         TGAACGTGCAGTCTTTATCTGGCTCGCCTGCAAATTTTCAAGTTTACACTG
genomic: CCAGAAGCGTGCTTTGGAAGCATTTCGGTTGGATCCTGCAAAATGGGGAGgtaaatacat ... ggttatgcagTGAACGTGCAGTCTTTATCTGGCTCGCCTGCAAATTTTCAAGTTTACACTG
EST: gi|27579405|gb|CB002100.1|CB002100
EST:     CCAGAAGCGTGCTTTGGAAGCATTTCGGTTGGATCCTGCAAAATGGGGAG                         TGAACGTGCAGTCTTTATCTGGCTCGCCTGCAAATTTTCAAGTTTACACTG
genomic: CCAGAAGCGTGCTTTGGAAGCATTTCGGTTGGATCCTGCAAAATGGGGAGgtaaatacat ... ggttatgcagTGAACGTGCAGTCTTTATCTGGCTCGCCTGCAAATTTTCAAGTTTACACTG
EST: gi|351025653|gb|FQ426667.1|FQ426667
EST:     CCAGAAGCGTGCTTTGGAAGCATTTCGGTTGGATCCTGCAAAATGGGGAG                         TGAACGTGCAGTCTTTATCTGGCTCGCCTGCAAATTTTCAAGTTTACACTG
genomic: CCAGAAGCGTGCTTTGGAAGCATTTCGGTTGGATCCTGCAAAATGGGGAGgtaaatacat ... ggttatgcagTGAACGTGCAGTCTTTATCTGGCTCGCCTGCAAATTTTCAAGTTTACACTG
EST: gi|352763949|gb|FQ465399.1|FQ465399
EST:     CCAGAAGCGTGCTTTGGAAGCATTTCGGTTGGATCCTGCAAAATGGGGAG                         TGAACGTGCAGTCTTTATCTGGCTCGCCTGCAAATTTTCAAGTTTACACTG
genomic: CCAGAAGCGTGCTTTGGAAGCATTTCGGTTGGATCCTGCAAAATGGGGAGgtaaatacat ... ggttatgcagTGAACGTGCAGTCTTTATCTGGCTCGCCTGCAAATTTTCAAGTTTACACTG
EST: gi|352768598|gb|FQ467810.1|FQ467810
EST:     CCAGAAGCGTGCTTTGGAAGCATTTCGGTTGGATCCTGCAAAATGGGGAG                         TGAACGTGCAGTCTTTATCTGGCTCGCCTGCAAATTTTCAAGTTTACACTG
genomic: CCAGAAGCGTGCTTTGGAAGCATTTCGGTTGGATCCTGCAAAATGGGGAGgtaaatacat ... ggttatgcagTGAACGTGCAGTCTTTATCTGGCTCGCCTGCAAATTTTCAAGTTTACACTG
EST: gi|110727742|gb|EE104853.1|EE104853
EST:     CCAGAAGCGTGCTTTGGAAGCATTTCGGTTGGATCCTGCAAAATGGGGAG                         TGAACGTGCAGTCTTTATCTGGCTCGCCTGCAAATTTTCAAGTTTACACTG
genomic: CCAGAAGCGTGCTTTGGAAGCATTTCGGTTGGATCCTGCAAAATGGGGAGgtaaatacat ... ggttatgcagTGAACGTGCAGTCTTTATCTGGCTCGCCTGCAAATTTTCAAGTTTACACTG
EST: gi|351052991|gb|FQ456598.1|FQ456598
EST:     CCAGAAGCGTGCTTTGGAAGCATTTCGGTTGGATCCTGCAAAATGGGGAG                         TGAACGTGCAGTCTTTATCTGGCTCGCCTGCAAATTTTCAAGTTTACACTG
genomic: CCAGAAGCGTGCTTTGGAAGCATTTCGGTTGGATCCTGCAAAATGGGGAGgtaaatacat ... ggttatgcagTGAACGTGCAGTCTTTATCTGGCTCGCCTGCAAATTTTCAAGTTTACACTG
EST: gi|351036425|gb|FQ457138.1|FQ457138
EST:     CCAGAAGCGTGCTTTGGAAGCATTTCGGTTGGATCCTGCAAAATGGGGAG                         TGAACGTGCAGTCTTTATCTGGCTCGCCTGCAAATTTTCAAGTTTACACTG
genomic: CCAGAAGCGTGCTTTGGAAGCATTTCGGTTGGATCCTGCAAAATGGGGAGgtaaatacat ... ggttatgcagTGAACGTGCAGTCTTTATCTGGCTCGCCTGCAAATTTTCAAGTTTACACTG
EST: gi|351042407|gb|FQ442874.1|FQ442874
EST:     CCAGAAGCGTGCTTTGGAAGCATTTCGGTTGGATCCTGCAAAATGGGGAG                         TGAACGTGCAGTCTTTATCTGGCTCGCCTGCAAATTTTCAAGTTTACACTG
genomic: CCAGAAGCGTGCTTTGGAAGCATTTCGGTTGGATCCTGCAAAATGGGGAGgtaaatacat ... ggttatgcagTGAACGTGCAGTCTTTATCTGGCTCGCCTGCAAATTTTCAAGTTTACACTG
EST: gi|351018926|gb|FQ426425.1|FQ426425
EST:     CCAGAAGCGTGCTTTGGAAGCATTTCGGTTGGATCCTGCAAAATGGGGAG                         TGAACGTGCAGTCTTTATCTGGCTCGCCTGCAAATTTTCAAGTTTACACTG
genomic: CCAGAAGCGTGCTTTGGAAGCATTTCGGTTGGATCCTGCAAAATGGGGAGgtaaatacat ... ggttatgcagTGAACGTGCAGTCTTTATCTGGCTCGCCTGCAAATTTTCAAGTTTACACTG
EST: gi|349822117|gb|FQ412381.1|FQ412381
EST:     CCAGAAGCGTGCTTTGGAAGCATTTCGGTTGGATCCTGCAAAATGGGGAG                         TGAACGTGCAGTCTTTATCTGGCTCGCCTGCAAATTTTCAAGTTTACACTG
genomic: CCAGAAGCGTGCTTTGGAAGCATTTCGGTTGGATCCTGCAAAATGGGGAGgtaaatacat ... ggttatgcagTGAACGTGCAGTCTTTATCTGGCTCGCCTGCAAATTTTCAAGTTTACACTG
EST: gi|351055450|gb|FQ442048.1|FQ442048
EST:     CCAGAAGCGTGCTTTGGAAGCATTTCGGTTGGATCCTGCAAAATGGGGAG                         TGAACGTGCAGTCTTTATCTGGCTCGCCTGCAAATTTTCAAGTTTACACTG
genomic: CCAGAAGCGTGCTTTGGAAGCATTTCGGTTGGATCCTGCAAAATGGGGAGgtaaatacat ... ggttatgcagTGAACGTGCAGTCTTTATCTGGCTCGCCTGCAAATTTTCAAGTTTACACTG
EST: gi|29785435|gb|CB342421.2|CB342421
EST:     CCAGAAGCGTGCTTTGGAAGCATTTCGGTTGGATCCTGCAAAATGGGGAG                         TGAACGTGCAGTCTTTATCTGGCTCGCCTGCAAATTTTCAAGTTTACACTG
genomic: CCAGAAGCGTGCTTTGGAAGCATTTCGGTTGGATCCTGCAAAATGGGGAGgtaaatacat ... ggttatgcagTGAACGTGCAGTCTTTATCTGGCTCGCCTGCAAATTTTCAAGTTTACACTG
EST: gi|352786291|gb|FQ478902.1|FQ478902
EST:     CCAGAAGCGTGCTTTGGAAGCATTTCGGTTGGATCCTGCAAAATGGGGAG                         TGAACGTGCAGTCTTTATCTGGCTCGCCTGCAAATTTTCAAGTTTACACTG
genomic: CCAGAAGCGTGCTTTGGAAGCATTTCGGTTGGATCCTGCAAAATGGGGAGgtaaatacat ... ggttatgcagTGAACGTGCAGTCTTTATCTGGCTCGCCTGCAAATTTTCAAGTTTACACTG
EST: gi|352772603|gb|FQ472078.1|FQ472078
EST:     CCAGAAGCGTGCTTTGGAAGCATTTCGGTTGGATCCTGCAAAATGGGGAG                         TGAACGTGCAGTCTTTATCTGGCTCGCCTGCAAATTTTCAAGTTTACACTG
genomic: CCAGAAGCGTGCTTTGGAAGCATTTCGGTTGGATCCTGCAAAATGGGGAGgtaaatacat ... ggttatgcagTGAACGTGCAGTCTTTATCTGGCTCGCCTGCAAATTTTCAAGTTTACACTG
EST: gi|351049398|gb|FQ449999.1|FQ449999
EST:     CCAGAAGCGTGCTTTGGAAGCATTTCGGTTGGATCCTGCAAAATGGGGAG                         TGAACGTGCAGTCTTTATCTGGCTCGCCTGCAAATTTTCAAGTTTACACTG
genomic: CCAGAAGCGTGCTTTGGAAGCATTTCGGTTGGATCCTGCAAAATGGGGAGgtaaatacat ... ggttatgcagTGAACGTGCAGTCTTTATCTGGCTCGCCTGCAAATTTTCAAGTTTACACTG
EST: gi|352781312|gb|FQ467758.1|FQ467758
EST:     CCAGAAGCGTGCTTTGGAAGCATTTCGGTTGGATCCTGCAAAATGGGGAG                         TGAACGTGCAGTCTTTATCTGGCTCGCCTGCAAATTTTCAAGTTTACACTG
genomic: CCAGAAGCGTGCTTTGGAAGCATTTCGGTTGGATCCTGCAAAATGGGGAGgtaaatacat ... ggttatgcagTGAACGTGCAGTCTTTATCTGGCTCGCCTGCAAATTTTCAAGTTTACACTG
EST: gi|352773363|gb|FQ470950.1|FQ470950
EST:     CCAGAAGCGTGCTTTGGAAGCATTTCGGTTGGATCCTGCAAAATGGGGAG                         TGAACGTGCAGTCTTTATCTGGCTCGCCTGCAAATTTTCAAAGTTTACACT
genomic: CCAGAAGCGTGCTTTGGAAGCATTTCGGTTGGATCCTGCAAAATGGGGAGgtaaatacat ... ggttatgcagTGAACGTGCAGTCTTTATCTGGCTCGCCTGCAAATTTTCAA-GTTTACACT
EST: gi|352769306|gb|FQ471455.1|FQ471455
EST:     CCAGAAGCGTGCTTTGGAAGCATTTCGGTTGGATCCTGCAAAATGGGGAG                         TGAACGTGCAGTCTTTATCTGGCTCGCCTGCAAATTTTCAAGTTTACACTG
genomic: CCAGAAGCGTGCTTTGGAAGCATTTCGGTTGGATCCTGCAAAATGGGGAGgtaaatacat ... ggttatgcagTGAACGTGCAGTCTTTATCTGGCTCGCCTGCAAATTTTCAAGTTTACACTG
EST: gi|352781111|gb|FQ466424.1|FQ466424
EST:     CCAGAAGCGTGCTTTGGAAGCATTTCGGTTGGATCCTGCAAAATGGGGAG                         TGAACGTGCAGTCTTTATCTGGCTCGCCTGCAAATTTTCAAGTTTACACTG
genomic: CCAGAAGCGTGCTTTGGAAGCATTTCGGTTGGATCCTGCAAAATGGGGAGgtaaatacat ... ggttatgcagTGAACGTGCAGTCTTTATCTGGCTCGCCTGCAAATTTTCAAGTTTACACTG
EST: gi|352776558|gb|FQ474860.1|FQ474860
EST:     CCAGAAGCGTGCTTTGGAAGCATTTCGGTTGGATCCTGCAAAATGGGGAG                         TGAACGTGCAGTCTTTATCTGGCTCGCCTGCCAATTTTCAAGTTTACACTG
genomic: CCAGAAGCGTGCTTTGGAAGCATTTCGGTTGGATCCTGCAAAATGGGGAGgtaaatacat ... ggttatgcagTGAACGTGCAGTCTTTATCTGGCTCGCCTGCAAATTTTCAAGTTTACACTG
EST: gi|351054819|gb|FQ462849.1|FQ462849
EST:     CCAGAAGCGTGCTTTGGAAGCATTTCGGTTGGATCCTGCAAAATGGGGAG                         TGAACGTGCAGTCTTTATCTGGCTCGCCTGCAAATTTTCAAGTTTACACTG
genomic: CCAGAAGCGTGCTTTGGAAGCATTTCGGTTGGATCCTGCAAAATGGGGAGgtaaatacat ... ggttatgcagTGAACGTGCAGTCTTTATCTGGCTCGCCTGCAAATTTTCAAGTTTACACTG
EST: gi|110719906|gb|EE095430.1|EE095430
EST:     CCAGAAGCGTGCTTTGGAAGCATTTCGGTTGGATCCTGCAAAATGGGGAG                         TGAACGTGCAGTCTTTATCTGGCTCGCCTGCAAATTTTCAAGTTTACACTG
genomic: CCAGAAGCGTGCTTTGGAAGCATTTCGGTTGGATCCTGCAAAATGGGGAGgtaaatacat ... ggttatgcagTGAACGTGCAGTCTTTATCTGGCTCGCCTGCAAATTTTCAAGTTTACACTG
EST: gi|351026152|gb|FQ428164.1|FQ428164
EST:     CCAGAAGCGTGCTTTGGAAGCATTTCGGTTGGATCCTGCAAAATGGGGAG                         TGAACGTGCAGTCTTTATCTGGCTCGCCTGCAAATTTTCAAGTTTACACTG
genomic: CCAGAAGCGTGCTTTGGAAGCATTTCGGTTGGATCCTGCAAAATGGGGAGgtaaatacat ... ggttatgcagTGAACGTGCAGTCTTTATCTGGCTCGCCTGCAAATTTTCAAGTTTACACTG
EST: gi|351016274|gb|FQ446134.1|FQ446134
EST:     CCAGAAGCGTGCTTTGGAAGCATTTCGGTTGGATCCTGCAAAATGGGGAG                         TGAACGTGCAGTCTTTATCTGGCTCGCCTGCAAATTTTCAAGTTTACACTG
genomic: CCAGAAGCGTGCTTTGGAAGCATTTCGGTTGGATCCTGCAAAATGGGGAGgtaaatacat ... ggttatgcagTGAACGTGCAGTCTTTATCTGGCTCGCCTGCAAATTTTCAAGTTTACACTG
EST: gi|351022606|gb|FQ447128.1|FQ447128
EST:     CCAGAAGCGTGCTTTGGAAGCATTTCGGTTGGATCCTGCAAAATGGGGAG                         TGAACGTGCAGTCTTTATCTGGCTCGCCTGCAAATTTTCAAGTTTACACTG
genomic: CCAGAAGCGTGCTTTGGAAGCATTTCGGTTGGATCCTGCAAAATGGGGAGgtaaatacat ... ggttatgcagTGAACGTGCAGTCTTTATCTGGCTCGCCTGCAAATTTTCAAGTTTACACTG
EST: gi|351045470|gb|FQ440655.1|FQ440655
EST:     CCAGAAGCGTGCTTTGGAAGCATTTCGGTTGGATCCTGCAAAATGGGGAG                         TGAACGTGCAGTCTTTATCTGGCTCGCCTGCAAATTTTCAAGTTTACACTG
genomic: CCAGAAGCGTGCTTTGGAAGCATTTCGGTTGGATCCTGCAAAATGGGGAGgtaaatacat ... ggttatgcagTGAACGTGCAGTCTTTATCTGGCTCGCCTGCAAATTTTCAAGTTTACACTG
EST: gi|352777763|gb|FQ466816.1|FQ466816
EST:     CCAGAAGCGTGCTTTGGAAGCATTTCGGTTGGATCCTGCAAAATGGGGAG                         TGAACGTGCAGTCTTTATCTGGCTCGCCTGCAAATTTTCAAGTTTACACTG
genomic: CCAGAAGCGTGCTTTGGAAGCATTTCGGTTGGATCCTGCAAAATGGGGAGgtaaatacat ... ggttatgcagTGAACGTGCAGTCTTTATCTGGCTCGCCTGCAAATTTTCAAGTTTACACTG
EST: gi|352781814|gb|FQ469112.1|FQ469112
EST:     CCAGAAGCGTGCTTTGGAAGCATTTCGGTTGGATCCTGCAAAATGGGGAG                         TGAACGTGCAGTCTTTATCTGGCTCGCCTGCAAATTTTCAAGTTTACACTG
genomic: CCAGAAGCGTGCTTTGGAAGCATTTCGGTTGGATCCTGCAAAATGGGGAGgtaaatacat ... ggttatgcagTGAACGTGCAGTCTTTATCTGGCTCGCCTGCAAATTTTCAAGTTTACACTG
EST: gi|352767847|gb|FQ466056.1|FQ466056
EST:     CCAGAAGCGTGCTTTGGAAGCATTTCGGTTGGATCCTGCAAAATGGGGAG                         TGAACGTGCAGTCTTTATCTGGCTCGCCTGCAAATTTTCAAGTTTACACTG
genomic: CCAGAAGCGTGCTTTGGAAGCATTTCGGTTGGATCCTGCAAAATGGGGAGgtaaatacat ... ggttatgcagTGAACGTGCAGTCTTTATCTGGCTCGCCTGCAAATTTTCAAGTTTACACTG
EST: gi|352777749|gb|FQ466802.1|FQ466802
EST:     CCAGAAGCGTGCTTTGGAAGCATTTCGGTTGGATCCTGCAAAATGGGGAG                         TGAACGTGCAGTCTTTATCTGGCTCGCCTGCAAATTTTCAAGTTTACACTG
genomic: CCAGAAGCGTGCTTTGGAAGCATTTCGGTTGGATCCTGCAAAATGGGGAGgtaaatacat ... ggttatgcagTGAACGTGCAGTCTTTATCTGGCTCGCCTGCAAATTTTCAAGTTTACACTG
EST: gi|352768544|gb|FQ467500.1|FQ467500
EST:     CCAGAAGCGTGCTTTGGAAGCATTTCGGTTGGATCCTGCAAAATGGGGAG                         TGAACGTGCAGTCTTTATCTGGCTCGCCTGCAAATTTTCAAGTTTACACTG
genomic: CCAGAAGCGTGCTTTGGAAGCATTTCGGTTGGATCCTGCAAAATGGGGAGgtaaatacat ... ggttatgcagTGAACGTGCAGTCTTTATCTGGCTCGCCTGCAAATTTTCAAGTTTACACTG
EST: gi|352763990|gb|FQ467560.1|FQ467560
EST:     CCAGAAGCGTGCTTTGGAAGCATTTCGGTTGGATCCTGCAAAATGGGGAG                         TGAACGTGCAGTCTTTATCTGGCTCGCCTGCAAATTTTCAAGTTTACACTG
genomic: CCAGAAGCGTGCTTTGGAAGCATTTCGGTTGGATCCTGCAAAATGGGGAGgtaaatacat ... ggttatgcagTGAACGTGCAGTCTTTATCTGGCTCGCCTGCAAATTTTCAAGTTTACACTG
EST: gi|352774203|gb|FQ474726.1|FQ474726
EST:     CCAGAAGCGTGCTTTGGAAGCATTTCGGTTGGATCCTGCAAAATGGGGAG                         TGAACGTGCAGTCTTTATCTGGCTCGCCTGCAAATTTTCAAGTTTACACTG
genomic: CCAGAAGCGTGCTTTGGAAGCATTTCGGTTGGATCCTGCAAAATGGGGAGgtaaatacat ... ggttatgcagTGAACGTGCAGTCTTTATCTGGCTCGCCTGCAAATTTTCAAGTTTACACTG
EST: gi|352782191|gb|FQ470093.1|FQ470093
EST:     CCAGAAGCGTGCTTTGGAAGCATTTCGGTTGGATCCTGCAAAATGGGGAG                         TGAACGTGCAGTCTTTATCTGGCTCGCCTGCAAATTTTCAAGTTTACACTG
genomic: CCAGAAGCGTGCTTTGGAAGCATTTCGGTTGGATCCTGCAAAATGGGGAGgtaaatacat ... ggttatgcagTGAACGTGCAGTCTTTATCTGGCTCGCCTGCAAATTTTCAAGTTTACACTG
EST: gi|352769465|gb|FQ471614.1|FQ471614
EST:     CCAGAAGCGTGCTTTGGAAGCATTTCGGTTGGATCCTGCAAAATGGGGAG                         TGAACGTGCAGTCTTTATCTGGCTCGCCTGCAAATTTTCAAGTTAACACTG
genomic: CCAGAAGCGTGCTTTGGAAGCATTTCGGTTGGATCCTGCAAAATGGGGAGgtaaatacat ... ggttatgcagTGAACGTGCAGTCTTTATCTGGCTCGCCTGCAAATTTTCAAGTTTACACTG
EST: gi|352777353|gb|FQ473987.1|FQ473987
EST:     CCAGAAGCGTGCTTTGGAAGCATTTCGGTTGGATCCTGCAAAATGGGGAG                         TGAACGTGCAGTCTTTATCTGGCTCGCCTGCAAATTTTCAAGTTTACACTG
genomic: CCAGAAGCGTGCTTTGGAAGCATTTCGGTTGGATCCTGCAAAATGGGGAGgtaaatacat ... ggttatgcagTGAACGTGCAGTCTTTATCTGGCTCGCCTGCAAATTTTCAAGTTTACACTG
EST: gi|352768409|gb|FQ469585.1|FQ469585
EST:     CCAGAAGCGTGCTTTGGAAGCATTTCGGTTGGATCCTGCAAAATGGGGAG                         TGAACGTGCAGTCTTTATCTGGCTCGCCTGCAAATTTTCAAGTTTACACTG
genomic: CCAGAAGCGTGCTTTGGAAGCATTTCGGTTGGATCCTGCAAAATGGGGAGgtaaatacat ... ggttatgcagTGAACGTGCAGTCTTTATCTGGCTCGCCTGCAAATTTTCAAGTTTACACTG
EST: gi|352781785|gb|FQ469083.1|FQ469083
EST:     CCAGAAGCGTGCTTTGGAAGCATTTCGGTTGGATCCTGCAAAATGGGGAG                         TGAACGTGCAGTCTTTATCTGGCTCGCCTGCAAATTTTCAAGTTTACACTG
genomic: CCAGAAGCGTGCTTTGGAAGCATTTCGGTTGGATCCTGCAAAATGGGGAGgtaaatacat ... ggttatgcagTGAACGTGCAGTCTTTATCTGGCTCGCCTGCAAATTTTCAAGTTTACACTG
EST: gi|46917672|gb|CN547001.1|CN547001
EST:     CCAGAAGCGTGCTTTGGAAGCATTTCGGTTGGATCCTGCAAAATGGGGAG                         TGAACGTGCAGTCTTTATCTGGCTCGCCTGCAAATTTTCAAGTTTACACTG
genomic: CCAGAAGCGTGCTTTGGAAGCATTTCGGTTGGATCCTGCAAAATGGGGAGgtaaatacat ... ggttatgcagTGAACGTGCAGTCTTTATCTGGCTCGCCTGCAAATTTTCAAGTTTACACTG
EST: gi|352768239|gb|FQ469414.1|FQ469414
EST:     CCAGAAGCGTGCTTTGGAAGCATTTCGGTTGGATCCTGCAAAATGGGGAG                         TGAACGTGCAGTCTTTATCTGGCTCGCCTGCAAATTTTCAAGTTTACACTG
genomic: CCAGAAGCGTGCTTTGGAAGCATTTCGGTTGGATCCTGCAAAATGGGGAGgtaaatacat ... ggttatgcagTGAACGTGCAGTCTTTATCTGGCTCGCCTGCAAATTTTCAAGTTTACACTG
EST: gi|352781462|gb|FQ468306.1|FQ468306
EST:     CCAGAAGCGTGCTTTGGAAGCATTTCGGTTGGATCCTGCAAAATGGGGAG                         TGAACGTGCAGTCTTTATCTGGCTCGCCTGCAAATTTTCAAGTTTACACTG
genomic: CCAGAAGCGTGCTTTGGAAGCATTTCGGTTGGATCCTGCAAAATGGGGAGgtaaatacat ... ggttatgcagTGAACGTGCAGTCTTTATCTGGCTCGCCTGCAAATTTTCAAGTTTACACTG
EST: gi|32250119|gb|CD715938.1|CD715938
EST:     CCAGAAGCGTGCTTTGGAAGCATTTCGGTTGGATCCTGCAAAATGGGGAG                         TGAACGTGCAGTCTTTATCTGGCTCGCCTGCAAATTTTCAAGTTTACACTG
genomic: CCAGAAGCGTGCTTTGGAAGCATTTCGGTTGGATCCTGCAAAATGGGGAGgtaaatacat ... ggttatgcagTGAACGTGCAGTCTTTATCTGGCTCGCCTGCAAATTTTCAAGTTTACACTG
EST: gi|351038704|gb|FQ464570.1|FQ464570
EST:     CCAGAAGCGTGCTTTGGAAGCATTTCGGTTGGATCCTGCAAAATGGGGAG                         TGAACGTGCAGTCTTTATCTGGCTCGCCTGCAAATTTTCAAGTTTACACTG
genomic: CCAGAAGCGTGCTTTGGAAGCATTTCGGTTGGATCCTGCAAAATGGGGAGgtaaatacat ... ggttatgcagTGAACGTGCAGTCTTTATCTGGCTCGCCTGCAAATTTTCAAGTTTACACTG
EST: gi|352772664|gb|FQ472139.1|FQ472139
EST:     CCAGAAGCGTGCTTTGGAAGCATTTCGGTTGGATCCTGCAAAATGGGGAG                         TGAACGTGCAGTCTTTATCTGGCTCGCCTGCAAATTTTCAAGTTTACACTG
genomic: CCAGAAGCGTGCTTTGGAAGCATTTCGGTTGGATCCTGCAAAATGGGGAGgtaaatacat ... ggttatgcagTGAACGTGCAGTCTTTATCTGGCTCGCCTGCAAATTTTCAAGTTTACACTG
EST: gi|351036770|gb|FQ457483.1|FQ457483
EST:     CCAGAAGCGTGCTTTGGAAGCATTTCGGTTGGATCCTGCAAAATGGGGAG                         TGAACGTGCAGTCTTTATCTGGCTCGCCTGCAAATTTTCAAGTTTACACTG
genomic: CCAGAAGCGTGCTTTGGAAGCATTTCGGTTGGATCCTGCAAAATGGGGAGgtaaatacat ... ggttatgcagTGAACGTGCAGTCTTTATCTGGCTCGCCTGCAAATTTTCAAGTTTACACTG
EST: gi|352773662|gb|FQ472444.1|FQ472444
EST:     CCAGAAGCGTGCTTTGGAAGCATTTCGGTTGGATCCTGCAAAATGGGGAG                         TGAACGTGCAGTCTTTATCTGGCTCGCCTGCAAATTTTCAAGTTTACACTG
genomic: CCAGAAGCGTGCTTTGGAAGCATTTCGGTTGGATCCTGCAAAATGGGGAGgtaaatacat ... ggttatgcagTGAACGTGCAGTCTTTATCTGGCTCGCCTGCAAATTTTCAAGTTTACACTG
EST: gi|352769660|gb|FQ468588.1|FQ468588
EST:     CCAGAAGCGTGCTTTGGAAGCATTTCGGTTGGATCCTGCAAAATGGGGAG                         TGAACGTGCAGTCTTTATCTGGCTCGCCTGCAAATTTTCAAGTTTACACTG
genomic: CCAGAAGCGTGCTTTGGAAGCATTTCGGTTGGATCCTGCAAAATGGGGAGgtaaatacat ... ggttatgcagTGAACGTGCAGTCTTTATCTGGCTCGCCTGCAAATTTTCAAGTTTACACTG
EST: gi|352780985|gb|FQ466298.1|FQ466298
EST:     CCAGAAGCGTGCTTTGGAAGCATTTCGGTTGGATCCTGCAAAATGGGGAG                         TGAACGTGCAGTCTTTATCTGGCTCGCCTGCAAATTTTCAAGTTTACACTG
genomic: CCAGAAGCGTGCTTTGGAAGCATTTCGGTTGGATCCTGCAAAATGGGGAGgtaaatacat ... ggttatgcagTGAACGTGCAGTCTTTATCTGGCTCGCCTGCAAATTTTCAAGTTTACACTG
EST: gi|352789755|gb|FQ478570.1|FQ478570
EST:     CCAGAAGCGTGCTTTGGAAGCATTTCGGTTGGATCCTGCAAAATGGGGAG                         TGAACGTGCAGTCTTTATCTGGCTCGCCTGCAAATTTTCAAGTTTACACTG
genomic: CCAGAAGCGTGCTTTGGAAGCATTTCGGTTGGATCCTGCAAAATGGGGAGgtaaatacat ... ggttatgcagTGAACGTGCAGTCTTTATCTGGCTCGCCTGCAAATTTTCAAGTTTACACTG
EST: gi|349823773|gb|FQ415184.1|FQ415184
EST:     CCAGAAGCGTGCTTTGGAAGCATTTCGGTTGGATCCTGCAAAATGGGGAG                         TGAACGTGCAGTCTTTATCTGGCTCGCCTGCAAATTTTCAAGTTTACACTG
genomic: CCAGAAGCGTGCTTTGGAAGCATTTCGGTTGGATCCTGCAAAATGGGGAGgtaaatacat ... ggttatgcagTGAACGTGCAGTCTTTATCTGGCTCGCCTGCAAATTTTCAAGTTTACACTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agcaggtaatagtgtgtcagctttgataaatgtttaatcacccttggttatgcagTGAACGTGCAGTCTTTATCTGGCTCGCCTGCAAATTTTCAAGTTTACACTGCACTATTAAAAGCTCATGAAAGAATTATGGCACTTGATCTTCCTCATGG
                               gtttaat  putative branch site (score: 4)
                     tttgataaatgtttaa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ccaggcgctgtgttttctcttcttctttctcctttcctttttttcagcaggtaatagtgtgtcagctttgataaatgtttaatcacccttggttatgcagTGAACGTGCAGTCTTTATCTGGCTCGCCTGCAAATTTTCAAGTTTACACTGCACTATTAAAAGCTCATGAAAGAATTATGGCACTTGATCTTCCTCATGG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAAGAA