Sequence
atgc intronic sequence ATGC exonic sequencegtatttttagctgatttgtagctcaatttttttgcttgttaatccatttccttcctcaagtccagtaatattggcaattctcttctcattttttgcttatgctcatctacaatcacttcagGGGCATAAAGATGCTACTGCTGAGAATGGGCCTTGGATAATTACATTGGATGGTCCAAGCTTTCTTTCTGTTATGCAACATGCTCAAAACCGTTCCTTGC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv00s0211g00060.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GRMZM2G133919_T01 (Zea mays), 3'ss of exon 5
gtatttttagctgatttgtagctcaatttttttgcttgttaatccatttccttcctcaagtccagtaatattggcaattctcttctc-attttttgcttatgctcatc---tacaatcacttcagGGGCATAAAGATGCTACTGCTGAGAATGGGCCTTGGATAATTACATTGGATGGTCCAAGCTTTCTTTCTGTTATGCAACATGCTCAAAACCGTTCCTTGC
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-----------------------------------------------gtacttgcacagctacaa-aatctcagtagctgtttcttctattacttctatatgctgatgacaagcaatattgttagGGCCATGAAAATGCTACAGCTGAAAATGGACCTTGGGTTATCACGTTGGATGCACCAAGCTATATTCCTGTTATGCAACATGCTCGAAACAGAGAGCTCC
upper sequence: Vv00s0211g00060.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA01G02480.1 (Glycine max), 3'ss of exon 5
gtatttttagctgatttgtagctca-atttttttgcttgttaatccatttccttcctcaagtccagtaatattggcaattctcttctcattttttgcttatgctcatctacaatcacttcagGGGCATAAAGATGCTACTGCTGAGAATGGGCCTTGGATAATTACATTGGATGGTCCAAGCTTTCTTTCTGTTATGCAACATGCTCAAAACCGTTCCTTGC
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-----------------gtgtgtcatattgacatgttttgtacttttattatattctcaaggtatgaaa-atcagctatgttgagttc--tggttactta-----atgggcaaatgc---agGGGCATGAAAATGCCACCGCTGAGAATGGGCCATGGATAATTACATTAGATGCTCCTAGTTTTATTGCTGTTATGCAACATGCTCGCAACCGTTCTTTGC
upper sequence: Vv00s0211g00060.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA09G33490.1 (Glycine max), 3'ss of exon 5
gtatttttagctgatttgtagctcaatttttttgcttgttaatccatttccttcctcaagtccagtaatattggcaattctcttctcattttttgcttatgctcatctacaatcac-ttcagGGGCATAAAGATGCTACTGCTGAGAATGGGCCTTGGATAATTACATTGGATGGTCCAAGCTTTCTTTCTGTTATGCAACATGCTCAAAACCGTTCCTTGC
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----------------------------gtatgtcatgttgacatgttttgttatttg---ctgaaggtat-gacaatcagct----atgttgagttttgattacttaacgggcacatgcagGGGCATGAAAATGCCACCGCTGAGAATGGGCCATGGATAATTACATTAGATGCTCCTAGTTTTATTGCTGTTATGCAACATGCTCGCAACCGTTCTTTGC
upper sequence: Vv00s0211g00060.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: AT5G65620.1 (Arabidopsis thaliana), 3'ss of exon 5
gtatttttagctgatttgtagctcaatttttttgcttgttaatccatttccttcctcaagtccagtaatattggcaattct-cttctcattttttgcttatgctcatctacaatcacttcagGGGCATAAAGATGCTACTGCTGAGAATGGGCCTTGGATAATTACATTGGATGGTCCAAGCTTTCTTTCTGTTATGCAACATGCTCAAAACCGTTCCTTGC
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-----------------gta--tcaatatta--actgaaagatatataaagttcc--atgtttcgttatttttttagtaaggtttgttaatttttgcttct--tgatatgtga-cact--agGGCCATGAAAATGCAACTGCTGAGAATGGACCATGGATCATTACACTGGATGCTCCTAGTTATCTTCCTGTCATGCAACATGCTAAAAACCGTGCTCTGCMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110723244|gb|EE100338.1|EE100338EST: GATTGCCTGCTACTGCTCTTGGGTTGGCTGCTCAAACAGCAGTGTCTAAG GGTCATAAAGATGCTACTGCTGAGAATGGGCCTTGGATAATTACATTGGAT
genomic: GATTGCCTGCTACTGCTCTTGGGTTGGCTGCTCAAACAGCAGTGTCTAAGgtatttttag ... atcacttcagGGGCATAAAGATGCTACTGCTGAGAATGGGCCTTGGATAATTACATTGGAT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aatattggcaattctcttctcattttttgcttatgctcatctacaatcacttcagGGGCATAAAGATGCTACTGCTGAGAATGGGCCTTGGATAATTACATTGGATGGTCCAAGCTTTCTTTCTGTTATGCAACATGCTCAAAACCGTTCCTTGC
tcacttc CT-rich tract
tcatttttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
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gtatttttagctgatttgtagctcaatttttttgcttgttaatccatttccttcctcaagtccagtaatattggcaattctcttctcattttttgcttatgctcatctacaatcacttcagGGGCATAAAGATGCTACTGCTGAGAATGGGCCTTGGATAATTACATTGGATGGTCCAAGCTTTCTTTCTGTTATGCAACATGCTCAAAACCGTTCCTTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT