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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcgccttttgatatcccccacacccccacccaagggggatcacttattgatgattaactcctaagcacaattcatttgatatctatgtttgcttgccatccttataagcttgttgagttattcaattacagATCACTTATTTCTCGATTAGAAGAAGTGGATCTGAGGAAGATGAAACATGAGGAAAAGATAGCGTTCTGGATCAACATACATAATGCATTGGTGATGCAT

Basic information

species Vitis vinifera
transcript Vv00s0207g00150.t01
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv00s0207g00150.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: LOC_Os07g03140.1 (Oryza sativa), 3'ss of exon 4
--gtgcgccttttgata-tcccccacacccccacccaagggggATCACTTATTGATGATTAACTCCTAAGCACAATTCATTTGATATCTATGTTTGCTTGCCATCCTTATAAGCTTGTTGAGTTATTCAATTACAGATCACTTATTTCTCGATTAGAAGAAGTGGATCTGAGGAAGATGAAACATGAGGAAAAGATAGCGTTCTGGATCAACATACATAATGCATTGGTGATGCAT
  | | |  | |||| | |    |||    |      |     |   || |  |  | || | | ||  | ||      | |||||||| |  |    | |  |  | || |||   ||| ||| ||||      | | | || | | ||| || ||     | |||||||| |  |||| | |||| |||||||| || ||||||||||||||||| || |||||| ||||||||
gtgagtggttcttgaaaatggttcacgttgcttttttactctcaatcctcaa-gtgggttcagtactctgaac------tgtgatatctgtagtactatacacttataattagc--attg-gttcttca------gGTTAATTTTGTATCGGTTGGAGACCATTGATCTGAGAAGAATGACAAATGATGAAAAGATTGCTTTCTGGATCAACATACACAACGCATTGTTGATGCAT

upper sequence: Vv00s0207g00150.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA16G25820.1 (Glycine max), 3'ss of exon 5
gtgcgccttttgatatcccccacacccccacccaagggggATCACTTATTGATGATTAACTCCTAAGCACAATTCATTTGATATCTATGTTTGCTTGCCATCCTTATAAGCTTGTTGAGTTATTCAATTACAGATCACTTATTTCTCGATTAGAAGAAGTGGATCTGAGGAAGATGAAACATGAGGAAAAGATAGCGTTCTGGATCAACATACATAATGCATTGGTGATGCAT
||| |  | || |||||      |   |        |  | |  | | | ||  ||||         || | || | |||   |||    |  ||||   |  | ||   | |       |||    |  ||||||||||||||||| |||||||||||| ||||   ||||| ||||||||||||| ||| |||| ||||||||||||||||| ||||| ||||||||||||
gtgagtttattaatatctaattgagatctt------gaagcttccatgt-gaaaatta---------catagttaagttggattcttcagtctcttggagttataatggccatccacttctatgttgtctcagATCACTTATTTCTCAATTAGAAGAAGTAGATCCTGGGAAGTTGAAACATGAGGAGAAGTTAGCTTTCTGGATCAACATACACAATGCTTTGGTGATGCAT

upper sequence: Vv00s0207g00150.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA02G06790.1 (Glycine max), 3'ss of exon 6
gtgcgccttttgatatcccccacacccccacccaagggggATCACTTATTGATGATTAACTCCTAAGCACAATTCATTTGATATCTATGTTTGCTTGCCATCCTTATAAGCTTGTTGAGTTATTCAATTACAGATCACTTATTTCTCGATTAGAAGAAGTGGATCTGAGGAAGATGAAACATGAGGAAAAGATAGCGTTCTGGATCAACATACATAATGCATTGGTGATGCAT
||| |  | || |||||      |  ||      | |  | |  | | |  |   |  |    ||||    |||| ||   | |||   |    |||  ||    ||   |||       |||    || ||| |||||||||| || |||||||||||| ||||   ||||| ||||| | ||||| ||| |||| ||||||||||||||||| ||||| ||||||||||||
gtgagtttattaatatctaattgagacc------atgaagctttcatgtgaaaagtacatggttaagttggattc-ttcagtctct---tgaagttgtaatggccatcgactt------ctatgttgtttcagGTCACTTATTTGTCAATTAGAAGAAGTAGATCCTGGGAAGTTGAAAAACGAGGACAAGTTAGCTTTCTGGATCAACATACACAATGCTTTGGTGATGCAT

upper sequence: Vv00s0207g00150.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA01G38680.1 (Glycine max), 3'ss of exon 8
gtgcgccttttgatatcccccacacccccacccaagggggATCACTTATTGATGATTAACTCCTA-AGCACAATTCATTTGATATCTATGTT-TGCTTGCCATCCTTATAAGCTTGTTGAGTTATTCAATTACAGATCACTTATTTCTCGATTAGAAGAAGTGGATCTGAGGAAGATGAAACATGAGGAAAAGATAGCGTTCTGGATCAACATACATAATGCATTGGTGATGCAT
                                    ||     |  || | ||  ||   |   | || | | || | || ||   |  ||| |   ||   |  | || |||||||    ||||    ||  || |||||||||| ||||||||||||||| || |   | | | ||||||| ||||| |||||||| || |||||||||||||| ||||| || |||||||||
--------------------------------gtgaggctgctatatacttatatttgtttgagatagtagagttgaattaattctttggttctatgtggagttttaatgagcttgtccttttatgttgttttagGTCACTTATTTGTCGATTAGAAGAAGTAGACCCCGGCAGGTTGAAACACGAGGAGAAGATAGCTTTTTGGATCAACATACACAATGCTTTAGTGATGCAT

upper sequence: Vv00s0207g00150.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA11G06610.1 (Glycine max), 3'ss of exon 2
gtgcgccttttgatatcccccacacccccacccaagggggATCACTTATTGATGATTAACTCCTA-AGCACAATTCATTTGA-TATCTATGTTTGCTTGCCATCCTTATAAGCTTGTTGAGTTATTCAATTACAGATCACTTATTTCTCGATTAGAAGAAGTGGATCTGAGGAAGATGAAACATGAGGAAAAGATAGCGTTCTGGATCAACATACATAATGCATTGGTGATGCAT
                                    ||   | |  || | ||  || | |   | || | | || | |  | | | |   | |   |    |  | || ||| |||    ||||    ||  || |||||||||| ||| ||||||||||| || |   | | | |||| || ||||| |||||||| || |||||||||||||| ||||| || |||||||||
--------------------------------gtgaggctgttatatacttatacttgattgagatagtagagttgaatgaactctttggttctaggttgagttttaatgagcatgtccttttatgttgttttagGTCACTTATTTGTCGGTTAGAAGAAGTAGACCCCGGCAGGTTGAAGCACGAGGAGAAGATAGCTTTTTGGATCAACATACACAATGCTTTAGTGATGCAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgatatctatgtttgcttgccatccttataagcttgttgagttattcaattacagATCACTTATTTCTCGATTAGAAGAAGTGGATCTGAGGAAGATGAAACATGAGGAAAAGATAGCGTTCTGGATCAACATACATAATGCATTGGTGATGCAT
 atttgat  putative branch site (score: 5)
                                         ttattcaatta  TA-rich tract