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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatggaattaaacttatcttaaatgcagtccaatttcttgctcatggttcaattaagtgttgtctggtgataagggtccagattttgggtttttatatttatggtttctaaatcattaaaagaaaaataaaaaatgcagATCCTACAACTTGAGAAAAGATTGCAAGGCCAATTTGCAGTGCGTTGTGCTCTAGAGAAAGCACTGGGTTATAGATCTTCCTCACATGATACTACAGTTG

Basic information

species Vitis vinifera
transcript Vv00s0207g00120.t01
intron # 5
splice site 3'
intron type U2


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgggtttttatatttatggtttctaaatcattaaaagaaaaataaaaaatgcagATCCTACAACTTGAGAAAAGATTGCAAGGCCAATTTGCAGTGCGTTGTGCTCTAGAGAAAGCACTGGGTTATAGATCTTCCTCACATGATACTACAGTTG
                     ttctaaa  putative branch site (score: 2)
 tttttatatttatggt  TA-rich tract