Sequence
atgc intronic sequence ATGC exonic sequencegtaagtgggttctgttcttgcggttctgtttaaacagtttcaagatatgcatacatttaatcttttttgagaatatttaggaatattcaattaatttgtttggatatggctctgattatcagCTGTCCAGGAAAGTGGTTCAAAATATTCATCTTTCTGGCGGAAGTTTGCTAGGAGTTTCACGTGGGGGACCCAGTGTTGCTGAAATTGTTGATAGTATGG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv00s0199g00220.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA01G03040.1 (Glycine max), 3'ss of exon 5
gtaagtgggttctgttcttgcggttctgtttaaacagtttcaagatatgcatacatttaatcttttttgagaatatttaggaatattc-----aattaatttgtttgg-atatggctctgattatcagCTGTCCAGGAAAGTGGTTCAAAATATTCATCTTTCTGGCGGAAGTTTGCTAGGAGTTTCACGTGGGGGACCCAGTGTTGCTGAAATTGTTGATAGTATGG
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gtaatctcacgcttccctccttgctgattttggtctaaat-atcatttgatttaactaaagatatattgcaaatctattgaacttttcttcttaatgaatgcttacaatatttggatttcatttgcagCTGTCAAGGAAAGTGGTTCAGAATATTCATCTTTCAGGTGGAAGCCTATTAGGAGTTTCACGTGGAGGACCTGGAGTCAGTGAAATTGTGGACAATTTGA
upper sequence: Vv00s0199g00220.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA02G04570.1 (Glycine max), 3'ss of exon 6
gtaagtg---ggttctgttcttgcgg--ttctgtttaaacagtttcaagatatgcatacatttaatcttttttgagaatatttaggaatattcaattaatttgtttgg-atatggctctgattatcagCTGTCCAGGAAAGTGGTTCAAAATATTCATCTTTCTGGCGGAA---GTTTGCTAGGAGTTTCACGTGGGGGACCCAGTGTTGCTGAAATTGTTGATAGTATGG
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gtaatctcacgcttccctccttgctgatttttggtcgaaatatcatttgattta-agatctatagttgaatctgatgaacttttcttccttttaatgaatgtttacaatattgggatttcatttgcagCTGTCAAGGAAAGTGGTTCAGAATATTCATCTTTCAGGTGGAAGAAGCCTATTGGGAGTTTCACGTGGAGGACCTGGAGTCAGTGAAATTGTGGACAATT---
upper sequence: Vv00s0199g00220.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA08G38450.1 (Glycine max), 3'ss of exon 5
gtaagtgggttctgttcttgcggttctgtttaaacagtttcaagatatgcatacatttaatcttttttgagaatatttaggaatattcaattaat-ttgtttggatatggctctgattatcagCTGTCCAGGAAAGTGGTTCAAAATATTCATCTTTCTGGCGGAAGTTTGCTAGGAGTTTCACGTGGGGGACCCAGTGTTGCTGAAATTGTTGATAGTATGG
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gtaatctcattttcccctccttgctgattttggtgtaacagatgattcatctaaaggtacaatctgtagcacataagttcttcttcctaatgactcttaaatatattgggctttcatttgcagCTGTCTAGAAAAGTAGTGCAGAATATTCATCTTTCTGGTGGAAGCCTGTTGGGAGTTTCACGAGGAGGACCTGGAGTCAGTGATATTGCGAACAGTCTGGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|71859409|gb|DT008464.1|DT008464EST: GAATTCCTTTTGGCTATCGTGGATTTTCTGAAGAAATAGCTGAAATGCCT CTGTCCAGGAAAGTGGTTCAAAATATTCATCTTTCTGGCGGAAGTTTGCTA
genomic: GAATTCCTTTTGGCTATCGTGGATTTTCTGAAGAAATAGCTGAAATGCCTgtaagtgggt ... tgattatcagCTGTCCAGGAAAGTGGTTCAAAATATTCATCTTTCTGGCGGAAGTTTGCTA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgagaatatttaggaatattcaattaatttgtttggatatggctctgattatcagCTGTCCAGGAAAGTGGTTCAAAATATTCATCTTTCTGGCGGAAGTTTGCTAGGAGTTTCACGTGGGGGACCCAGTGTTGCTGAAATTGTTGATAGTATGG
atatttaggaatattc TA-rich tract