1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...ttccctcttggtcaagtactaattcttttacttgtggattgatatatggtaagagaaaaaaaaaaatctgatagaatcctaccttcttactttattgcagGTGGAGGGGGGTGTTGCATTGTGGTTACTTGTGATGGTATGACACACACTGAAGAAGTCTTTTGTTCCTCTTTTTTTTTGTGCATCAACATGTTTAGGTG
species | Vitis vinifera |
transcript | Vv00s0187g00240.t01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AGCGCGCCATCATTTGTTCAAGCGATCTTGATGTTTGGTCATGTTGACTG GTGGAGGGGGGTGTAGCATTGTGGNTACTTGTGATGGTEST: gi|351021756|gb|FQ437141.1|FQ437141
genomic: AGCACGCCATCATTTGTTCAAGCGATCTTGATGTTTGGTCATGTTGACTGgtatgtatta ... tttattgcagGTGGAGGGGGGTGTTGCATTGTGGTTACTTGTGATGGT
EST: AGCACGCCATCATTTGTTCAAGCGATCTTGATGTTTGGTCATGTTGACTG GTGGAGGGGGGTGTTGCATTGTGGTTACTTGTGATGGTATGACACACACTGEST: gi|351028427|gb|FQ427323.1|FQ427323
genomic: AGCACGCCATCATTTGTTCAAGCGATCTTGATGTTTGGTCATGTTGACTGgtatgtatta ... tttattgcagGTGGAGGGGGGTGTTGCATTGTGGTTACTTGTGATGGTATGACACACACTG
EST: AGCACGCCATCATTTGTTCAAGCGATCTTGATGTTTGGTCATGTTGACTG GTGGAGGGGGGTGTTGCATTGTGGTTACTTGTGATGGTATGACACACACTG
genomic: AGCACGCCATCATTTGTTCAAGCGATCTTGATGTTTGGTCATGTTGACTGgtatgtatta ... tttattgcagGTGGAGGGGGGTGTTGCATTGTGGTTACTTGTGATGGTATGACACACACTG
atggtaagagaaaaaaaaaaatctgatagaatcctaccttcttactttattgcagGTGGAGGGGGGTGTTGCATTGTGGTTACTTGTGATGGTATGACACACACTGAAGAAGTCTTTTGTTCCTCTTTTTTTTTGTGCATCAACATGTTTAGGTG
ttcttac putative branch site (score: 2)
tcctaccttcttactt CT-rich tract
aaaaaaaaaaatctga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttccctcttggtcaagtactaattcttttacttgtggattgatatatggtaagagaaaaaaaaaaatctgatagaatcctaccttcttactttattgcagGTGGAGGGGGGTGTTGCATTGTGGTTACTTGTGATGGTATGACACACACTGAAGAAGTCTTTTGTTCCTCTTTTTTTTTGTGCATCAACATGTTTAGGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- ccctctt
- - - - - -tcaagta
- - - - - - - - - - - - - - - -ttgtgga
- - - - - - - - - - - - - - - - - - - - - - - - - - gagaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctgatag