Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttacacagagcgtccattaacatttttgcatttgaaatattgcatttctttttatctgttggtaacttgtttttattaaagaattgttctgctacatatctaacccattgacagGTCATAAGTGTTCACTGGATGTGGCTACCATCTTGCAAGGGGAGACCAAATTTTTTAGCGTCTTGATGCTTGCTTGGG

Basic information

species Vitis vinifera
transcript Vv00s0181g00250.t01
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv00s0181g00250.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA08G06300.1 (Glycine max), 3'ss of exon 5
---------gttacacagagcgtccattaacatttttgcatttg-aaatattgcatttctttttatctgttggtaacttgtttttattaaagaattgttctgctacatatctaacccattgacagGTCATAAGTGTTCACTGGATGTGGCTACCATCTTGCAAGGGGAGACCAAATTTTTTAGCGTCTTGATGCTTGCTTGGG
          ||  |   |  |||  | ||  || |  |||||  | || ||        | |||| | ||   ||  |||  | || ||||  || ||   ||   |||  ||  |  || |||| | |||| |   ||| |||||||| ||||||   ||||||||||||| |||||| || || ||||||||||| ||||
gtttcaaactttcaattcattgtcattcaaacttatcacattttcacattttatggccaatattattttttttcaa--tgtgctgatgaaag--ttatta-actttgtattaaatgc--tgtcagGCCGTAAGCGAAAACTTGATGTGGCCACCATCACACAAGGGGAGACCAGATTTTTCAGTGTGTTGATGCTTGCATGGG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161721143|gb|FC070385.1|FC070385
EST:     AGTTGGTGATCCTTGTTCACCAACTAATGCTGTTCTTGCTATTATTCGAG                         GTCATAAGTGTTCGCTGGATGTGGCTACCATCTTGCAAGGGGAGACCAAAT
genomic: AGTTGGTGATCCTTGTTCACCAATTAATGCTGTTCTTGCTATTATTCGAGgttacacaga ... ccattgacagGTCATAAGTGTTCACTGGATGTGGCTACCATCTTGCAAGGGGAGACCAAAT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tggtaacttgtttttattaaagaattgttctgctacatatctaacccattgacagGTCATAAGTGTTCACTGGATGTGGCTACCATCTTGCAAGGGGAGACCAAATTTTTTAGCGTCTTGATGCTTGCTTGGG
                                      atctaac  putative branch site (score: 2)
       ttgtttttattaaaga  TA-rich tract