Sequence
atgc intronic sequence ATGC exonic sequence...tgctgtttaccttttttgttgttgtgtgtatggtttgatgttggttctacacagttttatcttctctcttttttattaaaatagtgatttcatgtattagGTTTTCAAAGATGGAGATGGTTCTAAGGCAGCCTGGTTCTCGGCAAATGTATTGAGTTTGAAGGATCAAAAAGCTTATGTGTGTTACGCGGAACTTCCAT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv19s0176g00090.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA05G04730.1 (Glycine max), 3'ss of exon 6
tgctgtttaccttttttgttgttgtgtgtatggtttgatgtt-ggttctacaca-gttttatcttctctcttttttattaaaatagtgatttcatgtattagGTTTTCAAAGATGGAGATGGTTCTAAGGCAGCCTGGTTCTCGGCAAATGTATTGAGTTTGAAGGATCAAAAAGCTTATGTGTGTTACGCGGAACTTCCAT
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ggccatagtttataattaaaattagatgcactctttcctttttggatctgcttttaaattatatcttttcctagctatctgac--gcaatcatatgtattagGTTTTCAAAGATGGAGAAGGATTTACAGCAGCATGGTACACAGCCAGCATATTAAATTTGAAGGATGGTAAAGCTTATGTATGCTATGTTGTGCTTCTTG
upper sequence: Vv19s0176g00090.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA11G03650.1 (Glycine max), 3'ss of exon 8
-----------------------------------------------------------------------------------------tgctg--tttaccttttttgttgttgtgtgtatggtttgatgttggttctacacagttttatcttctctcttttttattaaaat--agtgatttcatgtattagGTTTTCAAAGATGGAGATGGTTCTAAGGCAGCCTGGTTCTCGGCAAATGTATTGAGTTTGAAGGATCAAAAAGCTTATGTGTGTTACGCGGAACTTCCAT
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gttgttatttttatttattttctttttaagttgaattacttaatgcccatgggttcatttttctgatatcaactttagtgaggattaggcactggttttaaattgacacacattcttttcatttttgaaaaataatattttac--tcttaaattatatatttcctagtaaactgaagctattatatgtatcagGTTTTCAAAGATGAGGAAGGGTTCAAAGCTGCCTGGTTCTCAGCCAATATTTTGACTTTGAAGGATAATAAAGCTTATGTAGGCTACACTTCACTTGTAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tctacacagttttatcttctctcttttttattaaaatagtgatttcatgtattagGTTTTCAAAGATGGAGATGGTTCTAAGGCAGCCTGGTTCTCGGCAAATGTATTGAGTTTGAAGGATCAAAAAGCTTATGTGTGTTACGCGGAACTTCCAT
ttttttattaaaatag TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tgctgtttaccttttttgttgttgtgtgtatggtttgatgttggttctacacagttttatcttctctcttttttattaaaatagtgatttcatgtattagGTTTTCAAAGATGGAGATGGTTCTAAGGCAGCCTGGTTCTCGGCAAATGTATTGAGTTTGAAGGATCAAAAAGCTTATGTGTGTTACGCGGAACTTCCAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
tgctgtt
- - - - - - - - - -tgttgtg
- - - - - - - - - - - - - tgtatgg
- - - - - - - - - - - - - - - - - - - tgttggt
- - - - - - - - - - - - - - - - - - - - - - - ctacaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaatag