Sequence
atgc intronic sequence ATGC exonic sequencegtaagtttagatagtgctttgtgaaattgaaccacagttcacaattgaaatgctgatcagatgttaaaaaatattggttttcaagttcacattttttctagttgcacggttttcatgtagtgagttggcatcactgcttccaaatttatttgactaatgatttccatgcttctagGTCAGGCCAGTGGCGTGGCTTTCGTTTATATTATATCCTGTGGGAAGGGTTGTCACGTATTTATCAATGGGAATGCTAAAAATGCTTGGTTTGAAAGGAA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv19s0090g01820.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA02G46780.1 (Glycine max), 3'ss of exon 4
gtaagtttagatagtgctttgtgaaattgaaccacagttcacaattgaaatgctgatcagatgttaaaaaatattggttttcaagttcacattttttctagttgcacggttttcatgtagtgagttggcatcactgcttccaa-atttatttgactaatgatttccatgcttctagGTCAGGCCAGTGGCGTGGCTTTCGTTTATATTATATCCTGTGGGAAGGGTTGTCACGTATTTATCAATGGGAATGCTAAAAATGCTTGGTTTGAAAGGAA
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gtaagttgtaaatttcttgccttttcttttataatatttgggaacagaaatg--------atgctgctgattaatcatttttgacaacacatcattcatatttacatgatatttctgcctcaactt----cttttgtaacaaatattgatattgatattggtcctaatgcctctagGTCAGGCCAGTGGCATGGCTTTCCCTGGTGTTGTATCCTGTAGGAAGAATTGTTACTTATCTTTCAATGGGGATGCTGAAATTGCTTGGCCTAAAAGGAA
upper sequence: Vv19s0090g01820.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: AT3G13070.1 (Arabidopsis thaliana), 3'ss of exon 4
gtaagtttagatagtgctttgtgaaattgaaccacagttcacaattgaaatgctgatcagatgttaaaaaatattggttttcaagttcacattttttctagttgcacggttttcatgtagtgagttggcatcactgcttccaaatttatttgactaatgatttccatgcttctagGTCAGGCCAGTGGCGTGGCTTTCGTTTATATTATATCCTGTGGGAAGGGTTGTCACGTATTTATCAATGGGAATGCTAAAAATGCTTGGTTTGAAAGGAA
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gtaagttaaaatta-attgtcagtggttcactctaag--caaactttatgtggatatccaatggctttgctcattgtgaccc---ttctgctatgaaatagtttaactgttcaaatctcatatgtgggtagtaaaaagacatgacttattttgt--atgact-----gtgcatagGTCAGGCCAGTGGCGTGGCTTTCCTTAGTATTATATCCTGTCGGAAGAATTGTCACATATCTGTCAATGGGAATACTGAAAATTCTTGGTTTGAAAGGAC
upper sequence: Vv19s0090g01820.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: AT1G55930.1 (Arabidopsis thaliana), 3'ss of exon 4
gtaagtttagatagtgctttgtgaaattgaaccacagttcacaattgaaatgctgatcagatgttaaaaaatattggttttcaagttcacattttttctagttgcacggttttcatgtagtgagttggcatcactgcttccaaatttat-ttgactaatgatttccatgcttctagGTCAGGCCAGTGGCGTGGCTTTCGTTTATATTATATCCTGTGGGAAGGGTTGTCACGTATTTATCAATGGGAATGCTAAAAATGCTTGGTTTGAAAGGAA
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--------------------------------------------------------------gtaagtttaaattagttatcattagcaaagacttgacagacagaatatgctcacatgataaa--agaaatagt-----ctgatttatgttgactta------ctatgcatctagGTCAGACCAGTGGCGTGGCTTTCCTTGATATTATATCCTGTTGGAAGAGTAGTAACATATCTTTCGATGGGAATTCTGAAAATTCTTGGTTTGAAAGGAC atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgagttggcatcactgcttccaaatttatttgactaatgatttccatgcttctagGTCAGGCCAGTGGCGTGGCTTTCGTTTATATTATATCCTGTGGGAAGGGTTGTCACGTATTTATCAATGGGAATGCTAAAAATGCTTGGTTTGAAAGGAA
gactaat putative branch site (score: 2)
tttccat putative PPT
aaatttatttgactaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaagtttagatagtgctttgtgaaattgaaccacagttcacaattgaaatgctgatcagatgttaaaaaatattggttttcaagttcacattttttctagttgcacggttttcatgtagtgagttggcatcactgcttccaaatttatttgactaatgatttccatgcttctagGTCAGGCCAGTGGCGTGGCTTTCGTTTATATTATATCCTGTGGGAAGGGTTGTCACGTATTTATCAATGGGAATGCTAAAAATGCTTGGTTTGAAAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA