Sequence
atgc intronic sequence ATGC exonic sequence...ttgattccatcttcttttgtgttgtgtgtgtgtgtgaatgtattgattcccaacttcatgctgttttcgaatctctttactcataaattacccttctcagGAATTTATTGAGGCAACGAAAGAACCCAGCATCACATTTGCTTTGGCCAAGTTTGATGGCATACTTGGACTTGGGTTTCAAGAGATTTCAGTTGGAAATG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv19s0090g00830.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: EFJ34432 (Selaginella moellendorffii), 3'ss of exon 3
ttgattccatcttcttttgtgttgtgtgtgtgtgtgaatgtattgattcccaacttcatgctgttttcgaatctctttactcataaat-tacccttctcagGAATTTATTGAGGCAACGAAAGAACCCAGCATCACATTTGCTTTGGCCAAGTTTGATGGCATACTTGGACTTGGGTTTCAAGAGATTTCAGTTGGAAATG
| || | || || | | || | | || | ||| | | | || | || |||| || |||| | || || | | || || ||||||||||||||||| ||||||||||| || ||| |||||| | ||| | |
--------------------------------------------gtttgcaaagttatcgatcttatggtcgctatataccttttgctatgcctgttgtagACATTTGCGGAATCAACAAGTGAGCCTGGGCTTGTTTTCCTCTTTGCCAAGTTTGATGGCATTCTTGGACTTGGATTCAAAGCGATTTCCATGGGACAGG
upper sequence: Vv19s0090g00830.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: EFJ06917 (Selaginella moellendorffii), 3'ss of exon 3
ttgattccatcttcttttgtgttgtgtgtgtgtgtgaatgtattgattcccaacttcatgctgttttcgaatctcttta---ctcataaattacccttctcagGAATTTATTGAGGCAACGAAAGAACCCAGCATCACATTTGCTTTGGCCAAGTTTGATGGCATACTTGGACTTGGGTTTCAAGAGATTTCAGTTGGAAATG
|| ||| | || | | || ||| || || || | | || | || |||| || |||| | || || | | || || ||||||||||||||||| ||||||||||| || ||| |||||| | ||| | |
---------------------------------------------gtttgcaaagttat-cgatcttacgatcgctatataccttttgctatgcctgttgtagACATTTGCGGAATCAACAAGTGAGCCTGGGCTTGTTTTCCTCTTTGCCAAGTTTGATGGCATTCTTGGACTTGGATTCAAAGCGATTTCCATGGGACAGG
upper sequence: Vv19s0090g00830.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: EFJ34434 (Selaginella moellendorffii), 3'ss of exon 3
ttgattccatcttcttttgtgttgtgtgtgtgtgtgaatgtattgattcccaacttcatgctgttttcgaatctcttta---ctcataaattacccttctcagGAATTTATTGAGGCAACGAAAGAACCCAGCATCACATTTGCTTTGGCCAAGTTTGATGGCATACTTGGACTTGGGTTTCAAGAGATTTCAGTTGGAAATG
|| ||| | || | | || ||| || || || | | | | || |||| || |||| | || || | | || | ||||||||||||||||| ||||||||||| || ||| |||||| ||| | |
---------------------------------------------gtttgcaaagttat-cgatcttatgatcgctatatagcttttgctatgcttgttgtagACATTTGCGGAATCAACAAGTGAGCCTGGGCTTGTTTTCCTCGTTGCCAAGTTTGATGGCATCCTTGGACTTGGATTCAAAGCGATTTCCAAGGGACAGG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.attcccaacttcatgctgttttcgaatctctttactcataaattacccttctcagGAATTTATTGAGGCAACGAAAGAACCCAGCATCACATTTGCTTTGGCCAAGTTTGATGGCATACTTGGACTTGGGTTTCAAGAGATTTCAGTTGGAAATG
tattgat putative branch site (score: 3)
ttacccttctc putative PPT
tttactcataaatta TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ttgattccatcttcttttgtgttgtgtgtgtgtgtgaatgtattgattcccaacttcatgctgttttcgaatctctttactcataaattacccttctcagGAATTTATTGAGGCAACGAAAGAACCCAGCATCACATTTGCTTTGGCCAAGTTTGATGGCATACTTGGACTTGGGTTTCAAGAGATTTCAGTTGGAAATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - ccatctt
- - - - - - - - - - - -gtgtgtg
- - - - - - - - - - - - - - - - -gtgaatg
- - - - - - - - - - - - - - - - - - - - - - - -tcccaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - -tcatgct