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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgttttcccttgcttgttgctcttccatatttcaactaactatttctttgacttgcatgaagttccctgatctaagttcctctatttttcctgtagTCAAATGATAACAAAGAGTGGGTTTCATCTACTTGCAATTATGGTGATAATTTCATAGCATCAGTCAGAAGGGGAAATGTGCATGCAGTTCAGTTTCATC

Basic information

species Vitis vinifera
transcript Vv19s0090g00810.t01
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv19s0090g00810.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA18G10460.1 (Glycine max), 3'ss of exon 5
-gtatgttttcccttgcttgttg---ctcttccatatttcaacta----actatttctttg-acttgcatgaag----ttccctgatctaagttcctctatttttcctgtagTCAAATGATAACAAAGAGTGGGTTTCATCTACTTGCAATTATGGTGATAATTTCATAGCATCAGTCAGAAGGGGAAATGTGCATGCAGTTCAGTTTCATC
 |||||||| | |||   | |     ||  |   |   |   ||     | | || || |  |  | ||||||     ||   | |||| | ||  |  |||||  |   ||||| |||| ||||| |||||| | || || || ||  | |||||||| || || ||||||||  | ||||| |||||||||||||||||||| || ||| 
tgtatgtttccacttttctttgaaatcttcttgttgccttggctgtcacattcttactctatatattcatgaaagtgtttaagtaatctgacttttttcattttctc---aGTCAGATGACAACAATGAGTGGATATCCTCCACCTGTGACTATGGTGACAAATTTATAGCATCTATTAGAAGAGGAAATGTGCATGCAGTTCAATTCCAT-

upper sequence: Vv19s0090g00810.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: AT4G26900.1 (Arabidopsis thaliana), 3'ss of exon 5
------------gtatgttttcccttgcttgttgctcttccatatttcaactaactatttctttgacttgcatgaagttccctgatctaagttcctctatttttcctgtagTCAAATGATAACAAAGAGTGGGTTTCATCTACTTGCAATTATGGTGATAATTTCATAGCATCAGTCAGAAGGGGAAATGTGCATGCAGTTCAGTTTCATC
             ||   | | | ||  || |  |  || | ||| || || |  |  |  | |    | |||| | |    | ||   |||| |   ||||   || |||||| |||| || || || ||| |||| ||||| || |||||||||||    || ||| | ||  | |||||||||||||||||||||||||| || ||||
gtatggatctaaataatctcttctttctttctgtcattttcgtatctctaccatattgtattctcttctacatgca-tgtgataattatagtttcataattt---ctatagTCAGATGAAAATAAGGACTGGATTTCGTCTACCTGTAATTATGGTGAATCATTTATATCTTCCATAAGAAGGGGAAATGTGCATGCAGTTCAATTCCATC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atttctttgacttgcatgaagttccctgatctaagttcctctatttttcctgtagTCAAATGATAACAAAGAGTGGGTTTCATCTACTTGCAATTATGGTGATAATTTCATAGCATCAGTCAGAAGGGGAAATGTGCATGCAGTTCAGTTTCATC
                       ccctgat  putative branch site (score: 4)
                                   ttcctctatttttcct  putative PPT
                                       tctattttt  TA-rich tract