Sequence
atgc intronic sequence ATGC exonic sequence...atatatatatatatatatttgtcttttttcttccctattgatttgttttctttctaatcatatggttaccttttgttctccttcattctgggaatgccagACCAATGGCGTGGTTTTTCCTAGCACATGTTTCTGTTCCAAACCTTTCAACTGTCATGTTCTATTACCAGACAGAGTTCTTGAACTTGGAAGCATCATTT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv19s0090g00060.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA18G11640.1 (Glycine max), 3'ss of exon 4
atatatatatatatatatttgtc--ttttttcttccctattgatttgttttctttctaatcatatggttaccttttgttctcctt-cattctgggaatgccagACCAATGGCGTGGTTTTTCCTAGCACATGTTTCTGTTCCAAACCTTTCAACTGTCATGTTCTATTACCAGACAGAGTTCTTGAACTTGGAAGCATCATTT
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-tgtgtgcatggctttaccaattgatatctcatgcattatgcatatgcta-caacatggtcat-tagttactaataatctttgtcatatgttggtgagggaagACCTATGTCTTGGTTTTTCCTTGCCCATGTTACGATTCCAAATCTTTCAACCGTCATCTTCTATTACGAAACCGAGGTTTTAAAGCTAGAAGCATCTTTC
upper sequence: Vv19s0090g00060.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: AT5G54860.1 (Arabidopsis thaliana), 3'ss of exon 4
atatatatatatatatatttgtcttttttcttccctattgatttgttttctttctaatcatatggttaccttttgttctccttcattctgggaatgccagACCAATGGCGTGGTTTTTCCTAGCACATGTTTCTGTTCCAAACCTTTCAACTGTCATGTTCTATTACCAGACAGAGTTCTTGAACTTGGAAGCATCATTT
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------gta-atgcaggctc-tcttaattagtcgctttcgaa--atttttcttcaagt------gttgctttctcatttacttttctctggttttac-agACCTATGGCATGGTTTTTCATTGCACATATCACTGTGCCAAATCTCTCTACCGTCATGTTCTATTACCAAACCGAGGTCTTGCAATTAGACGCTGCTTTC atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttttctttctaatcatatggttaccttttgttctccttcattctgggaatgccagACCAATGGCGTGGTTTTTCCTAGCACATGTTTCTGTTCCAAACCTTTCAACTGTCATGTTCTATTACCAGACAGAGTTCTTGAACTTGGAAGCATCATTT
ttctaat putative branch site (score: 2)
taatcatat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
atatatatatatatatatttgtcttttttcttccctattgatttgttttctttctaatcatatggttaccttttgttctccttcattctgggaatgccagACCAATGGCGTGGTTTTTCCTAGCACATGTTTCTGTTCCAAACCTTTCAACTGTCATGTTCTATTACCAGACAGAGTTCTTGAACTTGGAAGCATCATTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - tcttccc