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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ggtatgaaagatgtgtataaaagatgtgttctgttttgaatctgtcaaaactttatacccaatgaaatttttgtgatatcatctctggatgtgattgaagGTATGATTTACTAATTGCCAATAAAGAAGAGCTTGGTCAAATCATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAG

Basic information

species Vitis vinifera
transcript Vv19s0085g00880.t01
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|349827094|gb|FQ421367.1|FQ421367
EST:     CTTGGAGCAAACTTACTGCTGCTGAAAGGAGCAAACGTCTGCGGAAATG                         GTATGATTTACTAATTGCCAATAAAGAAGAGCTTGGTCAAATCATAACACT
genomic: CTTGGAGCAAACTTACTGCTGCTGAAAGGAGCAAACGTCTGCGGAAATGgtatggggaa ... gtgattgaagGTATGATTTACTAATTGCCAATAAAGAAGAGCTTGGTCAAATCATAACACT
EST: gi|351031176|gb|FQ445003.1|FQ445003
EST:     CTTGGAGCAAACTTACTGCTGCTGAAAGGAGCAAACGTCTGCGGAAATG                         GTATGATTTACTAATTGCCAATAAAGAAGAGCTTGGTCAAATCATAACACT
genomic: CTTGGAGCAAACTTACTGCTGCTGAAAGGAGCAAACGTCTGCGGAAATGgtatggggaa ... gtgattgaagGTATGATTTACTAATTGCCAATAAAGAAGAGCTTGGTCAAATCATAACACT
EST: gi|351022976|gb|FQ428885.1|FQ428885
EST:     CTTGGAGCAAACTTACTGCTGCTGAAAGGAGCAAACGTCTGCGGAAATG                         GTATGATTTACTAATTGCCAATAAAGAAGAGCTTGGTCAAATCATAACACT
genomic: CTTGGAGCAAACTTACTGCTGCTGAAAGGAGCAAACGTCTGCGGAAATGgtatggggaa ... gtgattgaagGTATGATTTACTAATTGCCAATAAAGAAGAGCTTGGTCAAATCATAACACT
EST: gi|110720877|gb|EE097183.1|EE097183
EST:     CTTGGAGCAAACTTACTGCTGCTGAAAGGAGCAAACGTCTGCGGAAATG                         GTATGATTTACTAATTGCCAATAAAGAAGAGCTTGGTCAAATCATAACACT
genomic: CTTGGAGCAAACTTACTGCTGCTGAAAGGAGCAAACGTCTGCGGAAATGgtatggggaa ... gtgattgaagGTATGATTTACTAATTGCCAATAAAGAAGAGCTTGGTCAAATCATAACACT
EST: gi|351026695|gb|FQ436348.1|FQ436348
EST:     CTTGGAGCAAACTTACTGCTGCTGAAAGGAGCAAACGTCTGCGGAAATG                         GTATGATTTACTAATTGCCAATAAAGAAGAGCTTGGTCAAATCATAACACT
genomic: CTTGGAGCAAACTTACTGCTGCTGAAAGGAGCAAACGTCTGCGGAAATGgtatggggaa ... gtgattgaagGTATGATTTACTAATTGCCAATAAAGAAGAGCTTGGTCAAATCATAACACT
EST: gi|71860234|gb|DT009289.1|DT009289
EST:     CTTGGAGCAAACTTACTGCTGCTGAAAGGAGCAAACGTCTGCGGAAATG                         GTATGATTTACTAATTGCCAATAAAGAAGAGCTTGGTCAAATCATAACACT
genomic: CTTGGAGCAAACTTACTGCTGCTGAAAGGAGCAAACGTCTGCGGAAATGgtatggggaa ... gtgattgaagGTATGATTTACTAATTGCCAATAAAGAAGAGCTTGGTCAAATCATAACACT
EST: gi|351012435|gb|FQ427036.1|FQ427036
EST:     CTTGGAGCAAACTTACTGCTGCTGAAAGGAGCAAACGTCTGCGGAAATG                         GTATGATTTACTAATTGCCAATAAAGAAGAGCTTGGTCAAATCATAACACT
genomic: CTTGGAGCAAACTTACTGCTGCTGAAAGGAGCAAACGTCTGCGGAAATGgtatggggaa ... gtgattgaagGTATGATTTACTAATTGCCAATAAAGAAGAGCTTGGTCAAATCATAACACT
EST: gi|161710292|gb|FC059806.1|FC059806
EST:     CTTGGAGCCAACTTACTGCTGCTGAAAGGAGCCAACGTCTGCGGAAATG                         GTATGATTTACTAATTGCC
genomic: CTTGGAGCAAACTTACTGCTGCTGAAAGGAGCAAACGTCTGCGGAAATGgtatggggaa ... gtgattgaagGTATGATTTACTAATTGCC
EST: gi|351023404|gb|FQ432787.1|FQ432787
EST:     CTTGGAGCAAACTTACTGCTGCTGAAAGGAGCAAACGTCTGCGGAAATG                         GTATGATTTACTAATTGCCAATAAAGAAGAGCTTGGTCAAATCATAACACT
genomic: CTTGGAGCAAACTTACTGCTGCTGAAAGGAGCAAACGTCTGCGGAAATGgtatggggaa ... gtgattgaagGTATGATTTACTAATTGCCAATAAAGAAGAGCTTGGTCAAATCATAACACT
EST: gi|71858274|gb|DT007329.1|DT007329
EST:     CTTGGAGCAAACTTACTGCTGCTGAAAGGAGCAAACGTCTGCGGAAATG                         GTATGATTTACTAATTGC
genomic: CTTGGAGCAAACTTACTGCTGCTGAAAGGAGCAAACGTCTGCGGAAATGgtatggggaa ... gtgattgaagGTATGATTTACTAATTGC
EST: gi|37185689|gb|CF605042.1|CF605042
EST:     CTTGGAGCAAACTTACTGCTGCTGAAAGGAGCAAACGTCTGCGGAAATG                         GTATGATTTACTAATTGCCAATAAAGAAGAGCTTGGTCAAATC
genomic: CTTGGAGCAAACTTACTGCTGCTGAAAGGAGCAAACGTCTGCGGAAATGgtatggggaa ... gtgattgaagGTATGATTTACTAATTGCCAATAAAGAAGAGCTTGGTCAAATC
EST: gi|351012851|gb|FQ430414.1|FQ430414
EST:     CTTGGAGCAAACTTACTGCTGCTGAAAGGAGCAAACGTCTGCGGAAATG                         GTATGATTTACTAATTGCCAATAAAGAAGAGCTTGGTCAAATCATAACACT
genomic: CTTGGAGCAAACTTACTGCTGCTGAAAGGAGCAAACGTCTGCGGAAATGgtatggggaa ... gtgattgaagGTATGATTTACTAATTGCCAATAAAGAAGAGCTTGGTCAAATCATAACACT
EST: gi|351024564|gb|FQ426373.1|FQ426373
EST:     CTTGGAGCAAACTTACTGCTGCTGAAAGGAGCAAACGTCTGCGGAAATG                         GTATGATTTACTAATTGCCAATAAAGAAGAGCTTGGTCAAATCATAACACT
genomic: CTTGGAGCAAACTTACTGCTGCTGAAAGGAGCAAACGTCTGCGGAAATGgtatggggaa ... gtgattgaagGTATGATTTACTAATTGCCAATAAAGAAGAGCTTGGTCAAATCATAACACT
EST: gi|77587321|gb|DV222801.1|DV222801
EST:     TGCTGCTGAAAGGAGCAAACGTCTGCGGAAATG                         GTATGATTTACTAATTGCCAATAAAGAAGAGCTTGGTCAAATCATAACACT
genomic: TGCTGCTGAAAGGAGCAAACGTCTGCGGAAATGgtatggggaa ... gtgattgaagGTATGATTTACTAATTGCCAATAAAGAAGAGCTTGGTCAAATCATAACACT
EST: gi|349823645|gb|FQ415055.1|FQ415055
EST:     CTTGGAGCAAACTTACTGCTGCTGAAAGGAGCAAACGTCTGCGGAAATG                         GTATGATTTACTAATTGCCAATAAAGAAGAGCTTGGTCAAATCATAACACT
genomic: CTTGGAGCAAACTTACTGCTGCTGAAAGGAGCAAACGTCTGCGGAAATGgtatggggaa ... gtgattgaagGTATGATTTACTAATTGCCAATAAAGAAGAGCTTGGTCAAATCATAACACT
EST: gi|351014822|gb|FQ438022.1|FQ438022
EST:     CTTGGAGCAAACTTACTGCTGCTGAAAGGAGCAAACGTCTGCGGAAATG                         GTATGATTTACTAATTGCCAATAAAGAAGAGCTTGGTCAAATCATAACACT
genomic: CTTGGAGCAAACTTACTGCTGCTGAAAGGAGCAAACGTCTGCGGAAATGgtatggggaa ... gtgattgaagGTATGATTTACTAATTGCCAATAAAGAAGAGCTTGGTCAAATCATAACACT
EST: gi|349829516|gb|FQ420048.1|FQ420048
EST:     CTTGGAGCAAACTTACTGCTGCTGAAAGGAGCAAACGTCTGCGGAAATG                         GTATGATTTACTAATTGCCAATAAAGAAGAGCTTGGTCAAATCATAACACT
genomic: CTTGGAGCAAACTTACTGCTGCTGAAAGGAGCAAACGTCTGCGGAAATGgtatggggaa ... gtgattgaagGTATGATTTACTAATTGCCAATAAAGAAGAGCTTGGTCAAATCATAACACT
EST: gi|351019842|gb|FQ439659.1|FQ439659
EST:     CTTGGAGCAAACTTACTGCTGCTGAAAGGAGCAAACGTCTGCGGAAATG                         GTATGATTTACTAATTGCCAATAAAGAAGAGCTTGGTCAAATCATAACACT
genomic: CTTGGAGCAAACTTACTGCTGCTGAAAGGAGCAAACGTCTGCGGAAATGgtatggggaa ... gtgattgaagGTATGATTTACTAATTGCCAATAAAGAAGAGCTTGGTCAAATCATAACACT
EST: gi|30300500|gb|CB977294.1|CB977294
EST:     CTTGGAGCAAACTTACTGCTGCTGAAAGGAGCAAACGTCTGCGGAAATG                         GTATGATTTACTAATTGCCAATAAAGAAGAGCTTGGTCAAATCATAACACT
genomic: CTTGGAGCAAACTTACTGCTGCTGAAAGGAGCAAACGTCTGCGGAAATGgtatggggaa ... gtgattgaagGTATGATTTACTAATTGCCAATAAAGAAGAGCTTGGTCAAATCATAACACT
EST: gi|351014217|gb|FQ434806.1|FQ434806
EST:     CTTGGAGCAAACTTACTGCTGCTGAAAGGAGCAAACGTCTGCGGAAATG                         GTATGATTTACTAATTGCCAATAAAGAAGAGCTTAGTCAAATCATAACACT
genomic: CTTGGAGCAAACTTACTGCTGCTGAAAGGAGCAAACGTCTGCGGAAATGgtatggggaa ... gtgattgaagGTATGATTTACTAATTGCCAATAAAGAAGAGCTTGGTCAAATCATAACACT
EST: gi|33405914|gb|CF211541.1|CF211541
EST:     CTTGGAGCAAACTTACTGCTGCTGAAAGGAGCAAACGTCTGCGGAAATG                         GTATGATTTACTAATTGCCAATAAAGAAGAGCTTGGTCAAATCATAACACT
genomic: CTTGGAGCAAACTTACTGCTGCTGAAAGGAGCAAACGTCTGCGGAAATGgtatggggaa ... gtgattgaagGTATGATTTACTAATTGCCAATAAAGAAGAGCTTGGTCAAATCATAACACT
EST: gi|351021635|gb|FQ430522.1|FQ430522
EST:     CTTGGAGCAAACTTACTGCTGCTGAAAGGAGCAAACGTCTGCGGAAATG                         GTATGATTTACTAATTGCCAATAAAGAAGAGCTTGGTCAAATCATAACACT
genomic: CTTGGAGCAAACTTACTGCTGCTGAAAGGAGCAAACGTCTGCGGAAATGgtatggggaa ... gtgattgaagGTATGATTTACTAATTGCCAATAAAGAAGAGCTTGGTCAAATCATAACACT
EST: gi|33407740|gb|CF213367.1|CF213367
EST:     CTTGGAGCAAACTTACTGCTGCTGAAAGGAGCAAACGTCTGCGGAAATG                         GTATGATTTACTAATTGCCAATAAAGAAGAGCTTGGTCAAATCATAACACT
genomic: CTTGGAGCAAACTTACTGCTGCTGAAAGGAGCAAACGTCTGCGGAAATGgtatggggaa ... gtgattgaagGTATGATTTACTAATTGCCAATAAAGAAGAGCTTGGTCAAATCATAACACT
EST: gi|71864068|gb|DT013123.1|DT013123
EST:     CTTGGAGCAAACTTACTGCTGCTGAAAGGAGCAAACGTCTGCGGAAATG                         GTATGATTTACTAATTGCCAATAAAGAAGAGCTTGGTCAAATCATAACACT
genomic: CTTGGAGCAAACTTACTGCTGCTGAAAGGAGCAAACGTCTGCGGAAATGgtatggggaa ... gtgattgaagGTATGATTTACTAATTGCCAATAAAGAAGAGCTTGGTCAAATCATAACACT
EST: gi|110711777|gb|EE088642.1|EE088642
EST:     CTTGGAGCAAACTTACTGCTGCTGAAAGGAGCAAACGTCTGCGGAAATG                         GTATGATTTACTAATTGCCAATAAAGAAGAGCTTGGTCAAATCATAACACT
genomic: CTTGGAGCAAACTTACTGCTGCTGAAAGGAGCAAACGTCTGCGGAAATGgtatggggaa ... gtgattgaagGTATGATTTACTAATTGCCAATAAAGAAGAGCTTGGTCAAATCATAACACT
EST: gi|71855632|gb|DT004687.1|DT004687
EST:     CTTGGAGCAAACTTACTGCTGCTGAAAGGAGCAAACGTCTGCGGAAATG                         GTATGATTTACTAATTGCCAATAAAGAAGAGCTTGGTCAAA
genomic: CTTGGAGCAAACTTACTGCTGCTGAAAGGAGCAAACGTCTGCGGAAATGgtatggggaa ... gtgattgaagGTATGATTTACTAATTGCCAATAAAGAAGAGCTTGGTCAAA
EST: gi|110711744|gb|EE088569.1|EE088569
EST:     CTTGGAGCAAACTTACTGCTGCTGAAAGGAGCAAACGTCTGCGGAAATG                         GTATGATTTACTAATTGCCAATAAAGAAGAGCTTGGTCAAATCATAACACT
genomic: CTTGGAGCAAACTTACTGCTGCTGAAAGGAGCAAACGTCTGCGGAAATGgtatggggaa ... gtgattgaagGTATGATTTACTAATTGCCAATAAAGAAGAGCTTGGTCAAATCATAACACT
EST: gi|71861762|gb|DT010817.1|DT010817
EST:     CTTGGAGCAAACTTACTGCTGCTGAAAGGAGCAAACGTCTGCGGAAATG                         GTATGATTTACTAATTGCCAATAAAGAAGAGCTTGGTCAAATCATAACACT
genomic: CTTGGAGCAAACTTACTGCTGCTGAAAGGAGCAAACGTCTGCGGAAATGgtatggggaa ... gtgattgaagGTATGATTTACTAATTGCCAATAAAGAAGAGCTTGGTCAAATCATAACACT
EST: gi|294966112|gb|GW837479.1|GW837479
EST:     CTTGGAGCAAACTTACTGCTGCTGAAAGGAGCAAACGTCTGCGGAAATG                         GTATGATTTACTAATTGCCAATAAAGAAGAGCTTGGTCAAATCATAACACT
genomic: CTTGGAGCAAACTTACTGCTGCTGAAAGGAGCAAACGTCTGCGGAAATGgtatggggaa ... gtgattgaagGTATGATTTACTAATTGCCAATAAAGAAGAGCTTGGTCAAATCATAACACT
EST: gi|110717484|gb|EE093391.1|EE093391
EST:     CTTGGAGCAAACTTACTGCTGCTGAAAGGAGCAAACGTCTGCGGAAATG                         GTATGATTTACTAATTGCCAATAAAGAAGAGCTTGGTCAAATCATAACACT
genomic: CTTGGAGCAAACTTACTGCTGCTGAAAGGAGCAAACGTCTGCGGAAATGgtatggggaa ... gtgattgaagGTATGATTTACTAATTGCCAATAAAGAAGAGCTTGGTCAAATCATAACACT
EST: gi|351033615|gb|FQ447774.1|FQ447774
EST:     CTTGGAGCAAACTTACTGCTGCTGAAAGGAGCAAACGTCTGCGGAAATG                         GTATGATTTACTAATTGCCAATAAAGAAGAGCTTGGTCAAATCATAACACT
genomic: CTTGGAGCAAACTTACTGCTGCTGAAAGGAGCAAACGTCTGCGGAAATGgtatggggaa ... gtgattgaagGTATGATTTACTAATTGCCAATAAAGAAGAGCTTGGTCAAATCATAACACT
EST: gi|71856998|gb|DT006053.1|DT006053
EST:     CTTGGAGCAAACTTACTGCTGCTGAAAGGAGCAAACGTCTGCGGAAATG                         GTATGATTTACTAATTGCCAATAAAGAAGAGCTTGGTCAAATCATAACACT
genomic: CTTGGAGCAAACTTACTGCTGCTGAAAGGAGCAAACGTCTGCGGAAATGgtatggggaa ... gtgattgaagGTATGATTTACTAATTGCCAATAAAGAAGAGCTTGGTCAAATCATAACACT
EST: gi|110377270|gb|EC942333.1|EC942333
EST:     CTTGGAGCAAACTTACTGCTGCTGAAAGGAGCAAACGTCTGCGGAAATG                         GTATGATTTACTAATTGCCAATAAAGAAGAGCTTGGTCAAATCATAACACT
genomic: CTTGGAGCAAACTTACTGCTGCTGAAAGGAGCAAACGTCTGCGGAAATGgtatggggaa ... gtgattgaagGTATGATTTACTAATTGCCAATAAAGAAGAGCTTGGTCAAATCATAACACT
EST: gi|110685428|gb|EE062138.1|EE062138
EST:     CTTGGAGCAAACTTACTGCTGCTGAAAGGAGCAAACGTCTGCGGAAATG                         GTATGATTTACTAATTGCCAATAAAGAAGAGCTTGGTCAAATCATAACACT
genomic: CTTGGAGCAAACTTACTGCTGCTGAAAGGAGCAAACGTCTGCGGAAATGgtatggggaa ... gtgattgaagGTATGATTTACTAATTGCCAATAAAGAAGAGCTTGGTCAAATCATAACACT
EST: gi|351027861|gb|FQ448431.1|FQ448431
EST:     CTTGGAGCAAACTTACTGCTGCTGAAAGGAGCAAACGTCTGCGGAAATG                         GTATGATTTACTAATTGCCAATAAAGAAGAGCTTGGTCAAATCATAACACT
genomic: CTTGGAGCAAACTTACTGCTGCTGAAAGGAGCAAACGTCTGCGGAAATGgtatggggaa ... gtgattgaagGTATGATTTACTAATTGCCAATAAAGAAGAGCTTGGTCAAATCATAACACT
EST: gi|351014497|gb|FQ437499.1|FQ437499
EST:     CTTGGAGCAAACTTACTGCTGCTGAAAGGAGCAAACGTCTGCGGAAATG                         GTATGATTTACTAATTGCCAATAAAGAAGAGCTTGGTCAAATCATAACACT
genomic: CTTGGAGCAAACTTACTGCTGCTGAAAGGAGCAAACGTCTGCGGAAATGgtatggggaa ... gtgattgaagGTATGATTTACTAATTGCCAATAAAGAAGAGCTTGGTCAAATCATAACACT
EST: gi|349824141|gb|FQ417528.1|FQ417528
EST:     CTTGGAGCAAACTTACTGCTGCTGAAAGGAGCAAACGTCTGCGGAAATG                         GTATGATTTACTAATTGCCAATAAAGAAGAGCTTGGTCAAATCATAACACT
genomic: CTTGGAGCAAACTTACTGCTGCTGAAAGGAGCAAACGTCTGCGGAAATGgtatggggaa ... gtgattgaagGTATGATTTACTAATTGCCAATAAAGAAGAGCTTGGTCAAATCATAACACT
EST: gi|351022046|gb|FQ437833.1|FQ437833
EST:     CTTGGAGCAAACTTACTGCTGCTGAAAGGAGCAAACGTCTGCGGAAATG                         GTATGATTTACTAATTGCCAATAAAGAAGAGCTTGGTCAAATCATAACACT
genomic: CTTGGAGCAAACTTACTGCTGCTGAAAGGAGCAAACGTCTGCGGAAATGgtatggggaa ... gtgattgaagGTATGATTTACTAATTGCCAATAAAGAAGAGCTTGGTCAAATCATAACACT
EST: gi|71860225|gb|DT009280.1|DT009280
EST:     CTTGGAGCAAACTTACTGCTGCTGAAAGGAGCAAACGTCTGCGGAAATG                         GTATGATTTACTAATTGCCAATAAAGAAGAGCTTGGTCAAATCATAACACT
genomic: CTTGGAGCAAACTTACTGCTGCTGAAAGGAGCAAACGTCTGCGGAAATGgtatggggaa ... gtgattgaagGTATGATTTACTAATTGCCAATAAAGAAGAGCTTGGTCAAATCATAACACT
EST: gi|110703160|gb|EE079765.1|EE079765
EST:     CTTGGAGCAAACTTACTGCTGCTGAAAGGAGCAAACGTCTGCGGAAATG                         GTATGATTTACTAATTGCCAATAAAGAAGAGCTTGGTCAAATCATAACACT
genomic: CTTGGAGCAAACTTACTGCTGCTGAAAGGAGCAAACGTCTGCGGAAATGgtatggggaa ... gtgattgaagGTATGATTTACTAATTGCCAATAAAGAAGAGCTTGGTCAAATCATAACACT
EST: gi|110711357|gb|EE087747.1|EE087747
EST:     CTTGGAGCAAACTTACTGCTGCTGAAAGGAGCAAACGTCTGCGGAAATG                         GTATGATTTACTAATTGCCAATAAAGAAGAGCTTGGTCAAATCATAACACT
genomic: CTTGGAGCAAACTTACTGCTGCTGAAAGGAGCAAACGTCTGCGGAAATGgtatggggaa ... gtgattgaagGTATGATTTACTAATTGCCAATAAAGAAGAGCTTGGTCAAATCATAACACT
EST: gi|110711773|gb|EE088638.1|EE088638
EST:     CTTGGAGCAAACTTACTGCTGCTGAAAGGAGCAAACGTCTGCGGAAATG                         GTATGATTTACTAATTGCCAATAAAGAAGAGCTTGGTCAAATCATAACACT
genomic: CTTGGAGCAAACTTACTGCTGCTGAAAGGAGCAAACGTCTGCGGAAATGgtatggggaa ... gtgattgaagGTATGATTTACTAATTGCCAATAAAGAAGAGCTTGGTCAAATCATAACACT
EST: gi|349832839|gb|FQ422961.1|FQ422961
EST:     CTTGGAGCAAACTTACTGCTGCTGAAAGGAGCAAACGTCTGCGGAAATG                         GTATGATTTACTAATTGCCAATAAAGAAGAGCTTGGTCAAATCATAACACT
genomic: CTTGGAGCAAACTTACTGCTGCTGAAAGGAGCAAACGTCTGCGGAAATGgtatggggaa ... gtgattgaagGTATGATTTACTAATTGCCAATAAAGAAGAGCTTGGTCAAATCATAACACT
EST: gi|351015664|gb|FQ427149.1|FQ427149
EST:     CTTGGAGCAAACTTACTGCTGCTGAAAGGAGCAAACGTCTGCGGAAATG                         GTATGATTTACTAATTGCCAATAAAGAAGAGCTTGGTCAAATCATAACACT
genomic: CTTGGAGCAAACTTACTGCTGCTGAAAGGAGCAAACGTCTGCGGAAATGgtatggggaa ... gtgattgaagGTATGATTTACTAATTGCCAATAAAGAAGAGCTTGGTCAAATCATAACACT
EST: gi|349827446|gb|FQ422314.1|FQ422314
EST:     CTTGGAGCAAACTTACTGCTGCTGAAAGGAGCAAACGTCTGCGGAAATG                         GTATGATTTACTAATTGCCAATAAAGAAGAGCTTGGTCAAATCATAACACT
genomic: CTTGGAGCAAACTTACTGCTGCTGAAAGGAGCAAACGTCTGCGGAAATGgtatggggaa ... gtgattgaagGTATGATTTACTAATTGCCAATAAAGAAGAGCTTGGTCAAATCATAACACT
EST: gi|110700048|gb|EE077644.1|EE077644
EST:     CTTGGAGCAAACTTACTGCTGCTGAAAGGAGCAAACGTCTGCGGAAATG                         GTATGATTTACTAATTGCCAATAAAGAAGAGCTTGGTCAAATCATAACACT
genomic: CTTGGAGCAAACTTACTGCTGCTGAAAGGAGCAAACGTCTGCGGAAATGgtatggggaa ... gtgattgaagGTATGATTTACTAATTGCCAATAAAGAAGAGCTTGGTCAAATCATAACACT
EST: gi|161710254|gb|FC060645.1|FC060645
EST:     CTTGGAGCAAACTTACTGCTGCTGAAAGGAGCAAACGTCTGCGGAAATG                         GTATGATTTACTAATTGCCAATAAAGAAGAGCTTGGTCAAATCATAACACT
genomic: CTTGGAGCAAACTTACTGCTGCTGAAAGGAGCAAACGTCTGCGGAAATGgtatggggaa ... gtgattgaagGTATGATTTACTAATTGCCAATAAAGAAGAGCTTGGTCAAATCATAACACT
EST: gi|110713914|gb|EE090252.1|EE090252
EST:     CTTGGAGCAAACTTACTGCTGCTGAAAGGAGCAAACGTCTGCGGAAATG                         GTATGATTTACTAATTGCCAATAAAGAAGAGCTTGGTCAAACCATAACACT
genomic: CTTGGAGCAAACTTACTGCTGCTGAAAGGAGCAAACGTCTGCGGAAATGgtatggggaa ... gtgattgaagGTATGATTTACTAATTGCCAATAAAGAAGAGCTTGGTCAAATCATAACACT
EST: gi|351012714|gb|FQ430277.1|FQ430277
EST:     CTTGGAGCAAACTTACTGCTGCTGAAAGGAGCAAACGTCTGCGGAAATG                         GTATGATTTACTAATTGCCAATAAAGAAGAGCTTGGTCAAATCATAACACT
genomic: CTTGGAGCAAACTTACTGCTGCTGAAAGGAGCAAACGTCTGCGGAAATGgtatggggaa ... gtgattgaagGTATGATTTACTAATTGCCAATAAAGAAGAGCTTGGTCAAATCATAACACT
EST: gi|349828464|gb|FQ417206.1|FQ417206
EST:     CTTGGAGCAAACTTACTGCTGCTGAAAGGAGCAAACGTCTGCGGAAATG                         GTATGATTTACTAATTGCCAATAAAGAAGAGCTTGGTCAAATCATAACACT
genomic: CTTGGAGCAAACTTACTGCTGCTGAAAGGAGCAAACGTCTGCGGAAATGgtatggggaa ... gtgattgaagGTATGATTTACTAATTGCCAATAAAGAAGAGCTTGGTCAAATCATAACACT
EST: gi|110719472|gb|EE094631.1|EE094631
EST:     CTTGGAGCAAACTTACTGCTGCTGAAAGGAGCAAACGTCTGCGGAAATG                         GTATGATTTACTAATTGCCAATAAAGAAGAGCTTGGTCAAATCATAACACT
genomic: CTTGGAGCAAACTTACTGCTGCTGAAAGGAGCAAACGTCTGCGGAAATGgtatggggaa ... gtgattgaagGTATGATTTACTAATTGCCAATAAAGAAGAGCTTGGTCAAATCATAACACT
EST: gi|351024107|gb|FQ423530.1|FQ423530
EST:     CTTGGAGCAAACTTACTGCTGCTGAAAGGAGCAAACGTCTGCGGAAATG                         GTATGATTTACTAATTGCCAATAAAGAAGAGCTTGGTCAAATCATAACACT
genomic: CTTGGAGCAAACTTACTGCTGCTGAAAGGAGCAAACGTCTGCGGAAATGgtatggggaa ... gtgattgaagGTATGATTTACTAATTGCCAATAAAGAAGAGCTTGGTCAAATCATAACACT
EST: gi|351021887|gb|FQ437674.1|FQ437674
EST:     CTTGGAGCAAACTTACTGCTGCTGAAAGGAGCAAACGTCTGCGGAAATG                         GTATGATTTACTAATTGCCAATAAAGAAGAGCTTGGTCAAATCATAACACT
genomic: CTTGGAGCAAACTTACTGCTGCTGAAAGGAGCAAACGTCTGCGGAAATGgtatggggaa ... gtgattgaagGTATGATTTACTAATTGCCAATAAAGAAGAGCTTGGTCAAATCATAACACT
EST: gi|351016508|gb|FQ423935.1|FQ423935
EST:     CTTGGAGCAAACTTACTGCTGCTGAAAGGAGCAAACGTCTGCGGAAATG                         GTATGATTTACTAATTGCCAATAAAGAAGAGCTTGGTCAAATCATAACACT
genomic: CTTGGAGCAAACTTACTGCTGCTGAAAGGAGCAAACGTCTGCGGAAATGgtatggggaa ... gtgattgaagGTATGATTTACTAATTGCCAATAAAGAAGAGCTTGGTCAAATCATAACACT
EST: gi|110712898|gb|EE088347.1|EE088347
EST:     CTTGGAGCAAACTTACTGCTGCTGAAAGGAGCAAACGTCTGCGGAAATG                         GTATGATTTACTAATTGCCAATAAAGAAGAGCTTGGTCAAATCATAACACT
genomic: CTTGGAGCAAACTTACTGCTGCTGAAAGGAGCAAACGTCTGCGGAAATGgtatggggaa ... gtgattgaagGTATGATTTACTAATTGCCAATAAAGAAGAGCTTGGTCAAATCATAACACT
EST: gi|349832403|gb|FQ420964.1|FQ420964
EST:     CTTGGAGCAAACTTACTGCTGCTGAAAGGAGCAAACGTCTGCGGAAATG                         GTATGATTTACTAATTGCCAATAAAGAAGAGCTTGGTCAAATCATAACACT
genomic: CTTGGAGCAAACTTACTGCTGCTGAAAGGAGCAAACGTCTGCGGAAATGgtatggggaa ... gtgattgaagGTATGATTTACTAATTGCCAATAAAGAAGAGCTTGGTCAAATCATAACACT
EST: gi|349831123|gb|FQ420793.1|FQ420793
EST:     CTTGGAGCAAACTTACTGCTGCTGAAAGGAGCAAACGTCTGCGGAAATG                         GTATGATTTACTAATTGCCAATAAAGAAGAGCTTGGTCAAATCATAACACT
genomic: CTTGGAGCAAACTTACTGCTGCTGAAAGGAGCAAACGTCTGCGGAAATGgtatggggaa ... gtgattgaagGTATGATTTACTAATTGCCAATAAAGAAGAGCTTGGTCAAATCATAACACT
EST: gi|110719810|gb|EE095263.1|EE095263
EST:     CTTGGAGCAAACTTACTGCTGCTGAAAGGAGCAAACGTCTGCGGAAATG                         GTATGATTTACTAATTGCCAATAAAGAAGAGCTTGGTCAAATCATAACACT
genomic: CTTGGAGCAAACTTACTGCTGCTGAAAGGAGCAAACGTCTGCGGAAATGgtatggggaa ... gtgattgaagGTATGATTTACTAATTGCCAATAAAGAAGAGCTTGGTCAAATCATAACACT
EST: gi|161712950|gb|FC062076.1|FC062076
EST:     CTTGGAGCAAACTTACTGCTGCTGAAAGGAGCAAACGTCTGCGGAAATG                         GTATGATTTACTAATTGCCAATAAAGAAGAGCTTGGTCAAATCATAACACT
genomic: CTTGGAGCAAACTTACTGCTGCTGAAAGGAGCAAACGTCTGCGGAAATGgtatggggaa ... gtgattgaagGTATGATTTACTAATTGCCAATAAAGAAGAGCTTGGTCAAATCATAACACT
EST: gi|352763959|gb|FQ465409.1|FQ465409
EST:     CTTGGAGCAAACTTACTGCTGCTGAAAGGAGCAAACGTCTGCGGAAATG                         GTATGATTTACTAATTGCCAATAAAGAAGAGCTTGGTCAAATCATAACACT
genomic: CTTGGAGCAAACTTACTGCTGCTGAAAGGAGCAAACGTCTGCGGAAATGgtatggggaa ... gtgattgaagGTATGATTTACTAATTGCCAATAAAGAAGAGCTTGGTCAAATCATAACACT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caaaactttatacccaatgaaatttttgtgatatcatctctggatgtgattgaagGTATGATTTACTAATTGCCAATAAAGAAGAGCTTGGTCAAATCATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAG
                   aaatttttgtgatat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ggtatgaaagatgtgtataaaagatgtgttctgttttgaatctgtcaaaactttatacccaatgaaatttttgtgatatcatctctggatgtgattgaagGTATGATTTACTAATTGCCAATAAAGAAGAGCTTGGTCAAATCATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
ggtatga
- - - - - - - - - aaaagat
- - - - - - - - - - - - - - - - - - - - - - -caaaact
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -cccaatg