1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...tcttttctgatgactttcttttaatgagatatcaaggtatagtcattattagtttgaattgtgttcctttctgaacgtggatcttgattttactgcacagGTAAAGATTGGTCTTCGAGTTCTTACCCGTCCTCTGCCAGACCAGTTACCTACAATTTATCGAACCCTTGGTGAGAACTACAATGAAAGAGTCCTGCCTT
species | Vitis vinifera |
transcript | Vv19s0085g00730.t01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CGCGCCCTCATCTTGTGGAGAGTACTTCAGGGAGCCATGACCTCCAGATG GTAAAGATTGGTCTTCGAGTTCTTACCCGTCCTCTGCCAGACCAGTTACCTEST: gi|110733003|gb|EE108782.1|EE108782
genomic: CGCGCCCTCATCTTGTGGAGAGTACTTCAGGGAGCCATGACCTCCAGATGgtaattttgt ... tactgcacagGTAAAGATTGGTCTTCGAGTTCTTACCCGTCCTCTGCCAGACCAGTTACCT
EST: CGCGCCCTCATCTTGTGGAGAGTACTTCAGGGAGCCATGACCTCCAGATG GTAAAGATTGGTCTTCGAGTTCTTACCCGTCCTCTGCCAGACCAGTTACCTEST: gi|71867260|gb|DT016315.1|DT016315
genomic: CGCGCCCTCATCTTGTGGAGAGTACTTCAGGGAGCCATGACCTCCAGATGgtaattttgt ... tactgcacagGTAAAGATTGGTCTTCGAGTTCTTACCCGTCCTCTGCCAGACCAGTTACCT
EST: CGCGCCCTCATCTTGTGGAGAGTACTTCAGGGAGCCATGACCTCCAGATG GTAAAGATTGGTCTTCGAGTTCTTACCCGTCCTCTGCCAGACCAGTTACCTEST: gi|110696854|gb|EE073329.1|EE073329
genomic: CGCGCCCTCATCTTGTGGAGAGTACTTCAGGGAGCCATGACCTCCAGATGgtaattttgt ... tactgcacagGTAAAGATTGGTCTTCGAGTTCTTACCCGTCCTCTGCCAGACCAGTTACCT
EST: CGCGCCCTCATCTTGTGGAGAGTACTTCAGGGAGCCATGACCTCCAGATG GTAAAGATTGGTCTTCGAGTTCTTACCCGTCCTCTGCCAGACCAGTTACCTEST: gi|71870697|gb|DT019752.1|DT019752
genomic: CGCGCCCTCATCTTGTGGAGAGTACTTCAGGGAGCCATGACCTCCAGATGgtaattttgt ... tactgcacagGTAAAGATTGGTCTTCGAGTTCTTACCCGTCCTCTGCCAGACCAGTTACCT
EST: CGCGCCCTCATCTTGTGGAGAGTACTTCAGGGAGCCATGACCTCCAGATG GTAAAGATTGGTCTTCGAGTTCTTACCCGTCCTCTGCCAGACCAGTTACCTEST: gi|30126574|gb|CB911913.1|CB911913
genomic: CGCGCCCTCATCTTGTGGAGAGTACTTCAGGGAGCCATGACCTCCAGATGgtaattttgt ... tactgcacagGTAAAGATTGGTCTTCGAGTTCTTACCCGTCCTCTGCCAGACCAGTTACCT
EST: GACCTCCAGATG GTAAAGATTGGTCTTCGAGTTCTTACCCGTCCTCTGCCAGACCAGTTACCTEST: gi|110379537|gb|EC944738.1|EC944738
genomic: GACCTCCAGATGgtaattttgt ... tactgcacagGTAAAGATTGGTCTTCGAGTTCTTACCCGTCCTCTGCCAGACCAGTTACCT
EST: CGCGCCCTCATCTTGTGGAGAGTACTTCAGGGAGCCATGACCTCCAGATG GTAAAGATTGGTCTTCGAGTTCTTACCCGTCCTCTGCCAGACCAGTTACCTEST: gi|110688172|gb|EE066420.1|EE066420
genomic: CGCGCCCTCATCTTGTGGAGAGTACTTCAGGGAGCCATGACCTCCAGATGgtaattttgt ... tactgcacagGTAAAGATTGGTCTTCGAGTTCTTACCCGTCCTCTGCCAGACCAGTTACCT
EST: CGCGCCCTCATCTTGTGGAGAGTACTTCAGGGAGCCATGACCTCCAGATG GTAAAGATTGGTCTTCGAGTTCTTACCCGTCCTCTGCCAGACCAGTTACCTEST: gi|77588331|gb|DV223379.1|DV223379
genomic: CGCGCCCTCATCTTGTGGAGAGTACTTCAGGGAGCCATGACCTCCAGATGgtaattttgt ... tactgcacagGTAAAGATTGGTCTTCGAGTTCTTACCCGTCCTCTGCCAGACCAGTTACCT
EST: CGCGCCCTCATCTTGTGGAGAGTACTTCAGGGAGCCATGACCTCCAGATG GTAAAGATTGGTCTTCGAGTTCTTACCCGTCCTCTGCCAGACCAGTTACCTEST: gi|110687081|gb|EE064178.1|EE064178
genomic: CGCGCCCTCATCTTGTGGAGAGTACTTCAGGGAGCCATGACCTCCAGATGgtaattttgt ... tactgcacagGTAAAGATTGGTCTTCGAGTTCTTACCCGTCCTCTGCCAGACCAGTTACCT
EST: CGCGCCCTCATCTTGTGGAGAGTACTTCAGGGAGCCATGACCTCCAGATG GTAAAGATTGGTCTTCGAGTTCTTACCCGTCCTCTGCCAGACCAGTTACCTEST: gi|110731197|gb|EE109145.1|EE109145
genomic: CGCGCCCTCATCTTGTGGAGAGTACTTCAGGGAGCCATGACCTCCAGATGgtaattttgt ... tactgcacagGTAAAGATTGGTCTTCGAGTTCTTACCCGTCCTCTGCCAGACCAGTTACCT
EST: CGCGCCCTCATCTTGTGGAGAGTACTTCAGGGAGCCATGACCTCCAGATG GTAAAGATTGGTCTTCGAGTTCTTACCCGTCCTCTGCCAGACCAGTTACCTEST: gi|161716392|gb|FC068402.1|FC068402
genomic: CGCGCCCTCATCTTGTGGAGAGTACTTCAGGGAGCCATGACCTCCAGATGgtaattttgt ... tactgcacagGTAAAGATTGGTCTTCGAGTTCTTACCCGTCCTCTGCCAGACCAGTTACCT
EST: CGCGCCCTCATCTTGTGGAGAGTACTTCAGGGAGCCATGACCTCCAGATG GTAAAGATTGGTCTTCGAGTTCTTACCCGTCCTCTGCCAGACCAGTTACCTEST: gi|110708369|gb|EE085834.1|EE085834
genomic: CGCGCCCTCATCTTGTGGAGAGTACTTCAGGGAGCCATGACCTCCAGATGgtaattttgt ... tactgcacagGTAAAGATTGGTCTTCGAGTTCTTACCCGTCCTCTGCCAGACCAGTTACCT
EST: CGCGCCCTCATCTTGTGGAGAGTACTTCAGGGAGCCATGACCTCCAGATG GTAAAGATTGGTCTTCGAGTTCTTACCCGTCCTCTGCCAGACCAGTTACCT
genomic: CGCGCCCTCATCTTGTGGAGAGTACTTCAGGGAGCCATGACCTCCAGATGgtaattttgt ... tactgcacagGTAAAGATTGGTCTTCGAGTTCTTACCCGTCCTCTGCCAGACCAGTTACCT
ttattagtttgaattgtgttcctttctgaacgtggatcttgattttactgcacagGTAAAGATTGGTCTTCGAGTTCTTACCCGTCCTCTGCCAGACCAGTTACCTACAATTTATCGAACCCTTGGTGAGAACTACAATGAAAGAGTCCTGCCTT
tcttgat putative branch site (score: 4)
ttttact CT-rich tract
ttgatttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcttttctgatgactttcttttaatgagatatcaaggtatagtcattattagtttgaattgtgttcctttctgaacgtggatcttgattttactgcacagGTAAAGATTGGTCTTCGAGTTCTTACCCGTCCTCTGCCAGACCAGTTACCTACAATTTATCGAACCCTTGGTGAGAACTACAATGAAAGAGTCCTGCCTT
- - - -tgatgac
- - - - - - - - - - - aatgaga