Sequence
atgc intronic sequence ATGC exonic sequencegtatgatgggttgcttcttttttttatgcacgttattgttctttcttccttctcatcttgacctgggaagcggcatgcagACTGCGGACATCTCTTTGCTTGCAATTTAAGCCCCACCACATTGCGGCAGGTGCAATTTTCCTTGCTGCCAAGTTCCTCAAAGTAAAGCTCCCATCAGAT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv19s0027g01670.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA08G17960.1 (Glycine max), 3'ss of exon 4
gtatgatgggttgcttcttttttttatgcacgttattgttctttcttccttctcatcttgacctgggaagcggcatgcagACTGCGGACATCTCTTTGCTTGCAATTTAAGCCCCACCACATTGCGGCAGGTGCAATTTTCCTTGCTGCCAAGTTCCTCAAAGTAAAGCTCCCATCAGAT
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gtatga-agattacacaattttttttaaggcgagtgtggcctttgatttttctttcctgaaattaggatgtgatatgcagACTTCGGACATCACTTTGCTTGCAATTTAAGCCCCATCACATTGCAGCTGGAGCCATATTCCTTGCTGCCAAGTTTCTGAAGGTGAAGCTACCATCAGAT
upper sequence: Vv19s0027g01670.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA15G41040.1 (Glycine max), 3'ss of exon 4
gtatgatgggttgcttcttttttttatgcacgttattgttctttcttccttctcatcttgacctgggaagcggcatgcagACTGCGGACATCTCTTTGCTTGCAATTTAAGCCCCACCACATTGCGGCAGGTGCAATTTTCCTTGCTGCCAAGTTCCTCAAAGTAAAGCTCCCATCAGAT
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gtatga-agattaca-caaatttttgttaaggccagtggcctttgatttttctttcctgaaatgaggatgtgatatgcagACTTCGGACATCACTTTGCTTGCAATTTAAGCCTCATCACATTGCAGCTGGAGCCATATTCCTTGCTGCCAAGTTTCTGAAGGTGAAGCTACCATCGGAT
upper sequence: Vv19s0027g01670.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: PP1S86_187V6.1 (Physcomitrella patens), 3'ss of exon 5
------------------gtatgatgggttgcttcttttttttatgcacgttattgttctttcttccttctcatct--tgacctgggaagcggcatgcagACTGCGGACATCTCTTTGCTTGCAATTTAAGCCCCACCACATTGCGGCAGGTGCAATTTTCCTTGCTGCCAAGTTCCTCAAAGTAAAGCTCCCATCAGAT
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caagatgccacttttagagatcagcagattaatgttctttgtgctgaaaactgtgaccactgtagtcggaaaggctaatgtaagggtgattattgtccagACTTCGCACGTCACTTTGCCTGCAATTTAAGCCTCACCACATCGCTGCGGGAGCTATCTTCCTCGCTGCTAAGTTTCTCAAAGTGAATCTGCCGAAGGAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.atgcacgttattgttctttcttccttctcatcttgacctgggaagcggcatgcagACTGCGGACATCTCTTTGCTTGCAATTTAAGCCCCACCACATTGCGGCAGGTGCAATTTTCCTTGCTGCCAAGTTCCTCAAAGTAAAGCTCCCATCAGAT
tcttgac putative branch site (score: 3)
ttattgtt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtatgatgggttgcttcttttttttatgcacgttattgttctttcttccttctcatcttgacctgggaagcggcatgcagACTGCGGACATCTCTTTGCTTGCAATTTAAGCCCCACCACATTGCGGCAGGTGCAATTTTCCTTGCTGCCAAGTTCCTCAAAGTAAAGCTCCCATCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC