1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...tataatgtaacacttgtcatgaccgtcaatctattagcacatcttggtcttgatgttcaaaattttgcccttttatgatattgatcatatctctttacagAATGCACGTGAAGCCATCTGCACAACCAATTGTCTTATCTGTTCCAATCTGCCATTATGACG
species | Vitis vinifera |
transcript | Vv19s0015g01740.t01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ACGCCAATATACTCCAGGCTTAGACATTTTTTGGCAACGATTTATAGCAG AATGCACGTGAAGCCATCTGCACAACCAATTGTCTTATCTGTTCCAATCTGEST: gi|110698503|gb|EE076073.1|EE076073
genomic: ACGCCAATATACTCCAGGCTTAGACATTTTTTGGCAACGATTTATAGCAGgtcagtattt ... ctctttacagAATGCACGTGAAGCCATCTGCACAACCAATTGTCTTATCTGTTCCAATCTG
EST: ACGCCAATATACTCCAGGCTTAGACATTTTTTGGCAACGATTTATAGCAG AATGCACGTGAAGCCATCTGCACAACCAATTGTCTTATCTGTTCCAATCTG
genomic: ACGCCAATATACTCCAGGCTTAGACATTTTTTGGCAACGATTTATAGCAGgtcagtattt ... ctctttacagAATGCACGTGAAGCCATCTGCACAACCAATTGTCTTATCTGTTCCAATCTG
ggtcttgatgttcaaaattttgcccttttatgatattgatcatatctctttacagAATGCACGTGAAGCCATCTGCACAACCAATTGTCTTATCTGTTCCAATCTGCCATTATGACG
tattgat putative branch site (score: 3)
tatctcttt putative PPT
ttttatgatattgat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tataatgtaacacttgtcatgaccgtcaatctattagcacatcttggtcttgatgttcaaaattttgcccttttatgatattgatcatatctctttacagAATGCACGTGAAGCCATCTGCACAACCAATTGTCTTATCTGTTCCAATCTGCCATTATGACG
- - - - - - - - tcatgac
- - - - - - - - - - - - - - - - - - - - - - - - cttgatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - -ttcaaaa