Sequence
atgc intronic sequence ATGC exonic sequence...atttatctacaagcacagccagttatattgattattttcgtctatagaatgacaacttctgcctgagttcatttttaatcaattaacttggaaattgcagTTGGGGGTCTTTTGAATGCTACTTTTGGAAATGCAACAGAACTAATTATATCAATTTATGCTTTGAAAAGTGGTATGATACGTGTTGTTCAGCAGTCATT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv19s0015g01320.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA08G44910.1 (Glycine max), 3'ss of exon 5
atttatctacaagcacagccagttatattgattattttcgtctatag--aatgaca-acttctgcctgagttcatttttaatcaattaac-ttggaaattgcagTTGGGGGTCTTTTGAATGCTACTTTTGGAAATGCAACAGAACTAATTATATCAATTTATGCTTTGAAAAGTGGTATGATACGTGTTGTTCAGCAGTCATT
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----cgccagatgcattatctaagtggttcactcttctattttgttgttagtcatatgcttgtggtgtggtttatttctaatttcataatattgtatcttacagTTGGGGGTCTTTTAAATGCTACATTTGGAAATGCAACAGAACTGATCATCTCAATATATGCACTGAAAAGTGGAATGACACGCGTTGTCCAGCTCTCTTT
upper sequence: Vv19s0015g01320.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA18G08030.1 (Glycine max), 3'ss of exon 5
atttatctacaagcacagccagttatattgattattttcgtctatagaatgacaacttctgcctgagttcatttttaatcaattaacttggaaattgcagTTGGGGGTCTTTTGAATGCTACTTTTGGAAATGCAACAGAACTAATTATATCAATTTATGCTTTGAAAAGTGGTATGATACGTGTTGTTCAGCAGTCATT-
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taatatctgcatgcggtatcagagtggttcgctaatctattttgttagtcatatgcttgtgg-tggtttatttctaaatttattatattgtatcttgcagtTGGGGGTCTTCTAAATGCTACATTTGGAAATGCGACAGAATTGATCATCTCAATATATGCATTAAAAAGTGGAATGACACGAGTTGTCCAGCTCTCTTTG
upper sequence: Vv19s0015g01320.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: AT3G13320.1 (Arabidopsis thaliana), 3'ss of exon 5
-------atttatctacaagcacagccagttatattgattattttcgtctatagaatgacaacttctgcctgagttcatttttaatcaattaacttggaaattgcagTTGGGGGTCTTTTGAATGCTACTTTTGGAAATGCAACAGAACTAATTATATCAATTTATGCTTTGAAAAGTGGTATGATACGTGTTGTTCAGCAGTCATT
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gtatggctttgttcttctgaaacgggcaattccttttcctttttttgttcttttttttcttttgtagttttgttataattgttgacgtgtta-tacatatttcacagTTGGAGGCCTCTTAAATGCTACATTCGGGAATGTGACAGAGCTGATCATATCAATTTTCGCTTTGAAAAATGGAATGATACGTGTTGTTCAGCTGACGTT
upper sequence: Vv19s0015g01320.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: PP1S245_10V6.1 (Physcomitrella patens), 3'ss of exon 5
------------------------------------atttatctacaagcacagccagttatattgattattttcgtctatagaatgacaacttctgcctgagttcatttt-------taatcaattaacttggaaat-----tgcagTTGGGGGTCTTTTGAATGCTACTTTTGGAAATGCAACAGAACTAATTATATCAATTTATGCTTTGAAAAGTGGTATGATACGTGTTGTTCAGCAGTCATT
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gtatttgctgacgctaaaccctcgcagcattgtgaagcatgttcgatcgaataccttgcaatctgagcttcattcttgtaggaaaacaaaacattttgctgatctagttctctcttgctaaaaagtaacctttgtgacctttgtgcagTTGGAGGTCTCCTGAATGCAACTTTTGGAAATGCAACTGAAATGATTATTTGTATCATGGCCCTGCGGAAGAATATGATACGAGTTGTACAGTTATCACT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.agaatgacaacttctgcctgagttcatttttaatcaattaacttggaaattgcagTTGGGGGTCTTTTGAATGCTACTTTTGGAAATGCAACAGAACTAATTATATCAATTTATGCTTTGAAAAGTGGTATGATACGTGTTGTTCAGCAGTCATT
aattaac putative branch site (score: 2)
ttcatttttaatcaat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
atttatctacaagcacagccagttatattgattattttcgtctatagaatgacaacttctgcctgagttcatttttaatcaattaacttggaaattgcagTTGGGGGTCTTTTGAATGCTACTTTTGGAAATGCAACAGAACTAATTATATCAATTTATGCTTTGAAAAGTGGTATGATACGTGTTGTTCAGCAGTCATT
- - - - - - -cacagcc
- - - - - - - - - - - - - - - - - - - - - - - -aatgacaa