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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtacaactgagacgccttatctgtgcttgccaatgaaatgatgtttccttttccacacttcatttactggtagttgctttttttcctttctgtagAGTAAAGCAGGGCCTCTTTTGATTGCAGTCAATCCCTTCAAAGATGTCCCAATTTATGGGAATGACTTTGTCACAGCATATAGCCAGAAAGTTAAAGATA

Basic information

species Vitis vinifera
transcript Vv19s0014g03640.t01
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv19s0014g03640.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA06G39740.1 (Glycine max), 3'ss of exon 4
-------gtaagtacaactgag--acgccttatctgtgcttgccaatgaaatgatgtttccttttccacacttcatttactggtagttgctttttttcctttctgtagAGTAAAGCAGGGCCTCTTTTGATTGCAGTCAATCCCTTCAAAGATGTCCCAATTTATGGGAATGACTTTGTCACAGCATATAGCCAGAAAGTTAAAGATA
       |    | ||| || |    |  ||||   | | |   | |   |||||  |   | | |      |||| | ||| | ||     ||||   | | |||||||||||||||||||  |||| |||||| ||||||| ||||||||| | | ||  ||||| ||||| | |||| |||| ||||| |||| | |||  ||||
ataggaaggtgttgcaagtgggttgtgaattattctttccttttacttggatgatcatctatatgct----ctcatgtgctgcttgtg----ttttctgtgtgtgtagAGTAAAGCAGGGCCAATTTTAATTGCACTCAATCCTTTCAAAGATCTTCAAACATATGGAAATGATTCTGTCTCAGCTTATAGGCAGAGAATTATTGATA

upper sequence: Vv19s0014g03640.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA12G34780.1 (Glycine max), 3'ss of exon 6
gtaagtacaactgagacgccttatctgtgcttgccaatgaaatgatgtttccttttccacacttcatttactggtagttgctttttttcctttctgtagAGTAAAGCAGGGCCTCTTTTGATTGCAGTCAATCCCTTCAAAGATGTCCCAATTTATGGGAATGACTTTGTCACAGCATATAGCCAGAAAGTTAAAGATA
    |||   |||   |   |    |||  || | | | |  |||| ||   | |        |||| | ||| |  ||||| ||| |      || |||||||| |||||||  |||| |||||| ||||||| ||||||||||| | |||||||||  |||| | | |  |||| ||||| |||||| |||  ||||
----gtatgtctgctgc-tttggcttgtttttcctactcacgtgattttctatgtatt----ctcatatgctgctc-ttgctctttgta-----tgcagAGTAAATCAGGGCCAATTTTAATTGCACTCAATCCTTTCAAAGATGTTCAAATTTATGGAGATGATTATATTTCAGCTTATAGGCAGAAACTTATGGATA

upper sequence: Vv19s0014g03640.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA13G35790.1 (Glycine max), 3'ss of exon 5
gtaagtacaactgagacgccttatctgtgcttgccaatgaaatgatgtttccttttccacacttcatttactggtagttgctttttttcctttctgtagAGTAAAGCAGGGCCTCTTTTGATTGCAGTCAATCCCTTCAAAGATGTCCCAATTTATGGGAATGACTTTGTCACAGCATATAGCCAGAAAGTTAAAGATA
    |||   |||   |   |    |||  || | | |    |||| ||   | |     |  |||| | ||| |  ||||| ||| |      || |||||||| |||||||  |||| |||||| ||||||| ||||||||||| |  ||||||||  | || | | |  |||| ||||| |||||| |||  ||||
----gtatgtctgctgc-tttggcttgtttttcctactcgcgtgattttctatgta----atctcatatgctgctc-ttgctctttgta-----tgcagAGTAAATCAGGGCCAATTTTAATTGCACTCAATCCGTTCAAAGATGTTCAGATTTATGGAGACGATTATATTTCAGCTTATAGGCAGAAACTTATGGATA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgtttccttttccacacttcatttactggtagttgctttttttcctttctgtagAGTAAAGCAGGGCCTCTTTTGATTGCAGTCAATCCCTTCAAAGATGTCCCAATTTATGGGAATGACTTTGTCACAGCATATAGCCAGAAAGTTAAAGATA
                                 ttgctttttttccttt  CT-rich tract
                                     ttttttt  TA-rich tract