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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagagaaaaaggacttaccctttgttaataattgatcgagggaagggggcataaatttgattgttggtttatgatatagGTTGTCAGTGAGCCAAGCTTGACAAAGTCAGGTGTGTACTGGAGCTGGAACAAGAACTCAGCTTCATTTGAGAACCAGTTGTCTCAGGAAGCTAGTGATG

Basic information

species Vitis vinifera
transcript Vv19s0014g03160.t01
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv19s0014g03160.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA12G35050.2 (Glycine max), 3'ss of exon 4
gtaagagaaaaaggacttaccctttgttaataattgat-cgagggaagggggc------ataaatttgattgttg---------gtttatgatatagGTTGTCAGTGAGCCAAGCTTGACAAAGTCAGGTGTGTACTGGAGCTGGAACAAGAACTCAGCTTCATTTGAGAACCAGTTGTCTCAGGAAGCTAGTGATG
|||| |  || |  |     |    |   |||||   | | || | | |  |       |||  |||  || |           || | | ||||||||||| ||||| |||||| | ||||| || ||||| |||||||||||||||||    |||||||| ||||| ||||||||||||||||| || |||||| 
gtaatatcaataataaccctctagggaagataatgactacaagagtatgaagttttcaaatatctttatttctcatgtgtggttgtcttttatatagGTTGTAAGTGATCCAAGCCTAACAAAATCTGGTGTTTACTGGAGCTGGAACAAAGCATCAGCTTCGTTTGAAAACCAGTTGTCTCAGGAGGCCAGTGATA

upper sequence: Vv19s0014g03160.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA12G23140.1 (Glycine max), 3'ss of exon 5
gtaagagaaaaaggacttaccctttgttaataattgatcgagggaag---ggggcataaatttga-ttgttggtttatgatatagGTTGTCAGTGAGCCAAGCTTGACAAAGTCAGGTGTGTACTGGAGCTGGAACAAGAACTCAGCTTCATTTGAGAACCAGTTGTCTCAGGAAGCTAGTGATG
                              | |||  | || | |     |   |  |  |||||  |||||  || |  | |||||||| ||||| |||||| ||||||| |||||||| ||||||||||||||      ||| ||||| ||||| ||||| ||||| || || || || ||||
-----------------------------gtgatt--ttgaagaatccttgtttctcatgtttgaactgttgtgttcttgtgtagGTTGTGAGTGATCCAAGCCTGACAAAATCAGGTGTTTACTGGAGCTGGAATGCAGCCTCTGCTTCGTTTGAAAACCAATTGTCCCAAGAGGCCAGCGATG

upper sequence: Vv19s0014g03160.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA06G38160.1 (Glycine max), 3'ss of exon 4
-----------------gtaagagaaaaaggacttaccctttgttaataattgatcgagggaagggggcataaatttgattgttggtttat---gatatagGTTGTCAGTGAGCCAAGCTTGACAAAGTCAGGTGTGTACTGGAGCTGGAACAAGAACTCAGCTTCATTTGAGAACCAGTTGTCTCAGGAAGCTAGTGATG
                  | |   ||| ||| | |     ||||||  ||    |    | |||    | |   | | ||  |||   | |     | |||||||| ||||| |||||| | ||||| |||||||| |||||||||||||||  |  ||| ||||| ||||| ||||| ||||| || ||||| || ||||
atcccttaattaagcagtttattcaaacaggccatgtatgttgttagcaacgtgtttttg-aagaatccttgtttctcatgtttgaactgttcttgtgtagGTTGTGAGTGATCCAAGCCTAACAAAATCAGGTGTTTACTGGAGCTGGAACGCGGCCTCTGCTTCGTTTGAAAACCAATTGTCCCAAGAAGCCAGCGATG

upper sequence: Vv19s0014g03160.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: AT5G54190.2 (Arabidopsis thaliana), 3'ss of exon 3
----------------------------gtaagagaaa-aaggacttaccctttgttaataattgatcgagggaagggggcataaatttgattgttggtttatgatatagGTTGTCAGTGAGCCAAGCTTGACAAAGTCAGGTGTGTACTGGAGCTGGAACAAGAACTCAGCTTCATTTGAGAACCAGTTGTCTCAGGAAGCTAGTGATG
                            ||  | ||   ||| |   |  ||||     | |||  ||  |  | |    ||   |  |   | ||| ||| |  |  |||| ||   ||| ||||||||||| ||||| || ||||| |||||||||||||||| ||| |||||||||||||| ||| ||||||| |||||||| ||||
gttagaaaattaaccaaaacctaacgttgtttgtgacgcaagaaaccattcttt-cagtttattattcttgctatgtactca---acctatgtattgatttgt--tgaagGTGGTGGCTGATCCAAGCTTGACGAAGTCGGGAGTGTATTGGAGCTGGAACAAGACCTCGGCTTCATTTGAGAATCAGCTGTCTCAAGAAGCTAGCGATG

upper sequence: Vv19s0014g03160.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: AT4G27440.1 (Arabidopsis thaliana), 3'ss of exon 3
gtaagagaaaaaggact-taccctttgttaataattgatcgagggaaggg-------ggcataaatttga-ttgttggtttatgata---tagGTTGTCAGTGAGCCAAGCTTGACAAAGTCAGGTGTGTACTGGAGCTGGAACAAGAACTCAGCTTCATTTGAGAACCAGTTGTCTCAGGAAGCTAGTGATG
|||| | | ||   | | |    |||||   |  || ||| ||| |||         |   |  | |  |    | |  || || |     |||| || ||||| ||||||||||| || ||||| || || ||||||||||||||    || ||||| |||||||||||||| ||  | ||||| ||||| |
gtaatatagaagatagtgttgtttttgtagcttgttaatcaaggaaagacttttcttgctgtgtactcaagccatagagttttgtttgatcagGTGGTGAGTGATCCAAGCTTGACGAAATCAGGGGTTTATTGGAGCTGGAACAATGCTTCGGCTTCTTTTGAGAACCAGTTATCAGAAGAAGCAAGTGACG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71866535|gb|DT015590.1|DT015590
EST:     TTACCAAGGGCTATGTCTCCGAGGAAGAATCTGGAAAAAGACTTGCACAG                         GTTGTCAGTGAGCCAAGCTTGACAAAGTCAGGTGTGTACTGGAGCTGGAAC
genomic: TTACCAAGGGCTATGTCTCCGAGGAAGAATCTGGAAAAAGACTTGCACAGgtaagagaaa ... tatgatatagGTTGTCAGTGAGCCAAGCTTGACAAAGTCAGGTGTGTACTGGAGCTGGAAC
EST: gi|77586160|gb|DV222178.1|DV222178
EST:     TTACCAAGGGCTATGTCTCCGAGGAAGAATCTGGAAAAAGACTTGCACAG                         GTTGTCAGTGAGCCAAGCTTGAC
genomic: TTACCAAGGGCTATGTCTCCGAGGAAGAATCTGGAAAAAGACTTGCACAGgtaagagaaa ... tatgatatagGTTGTCAGTGAGCCAAGCTTGAC
EST: gi|30251393|gb|CB969126.1|CB969126
EST:     TTACCAAGGGCTATGTCTCCGAGGAAGAATCTGGAAAAAGACTTGCACAG                         GTTGTCAGTGAGCCAAGCTTGACAAAGTCAGGTGTGTACTGGAGCTGGAAC
genomic: TTACCAAGGGCTATGTCTCCGAGGAAGAATCTGGAAAAAGACTTGCACAGgtaagagaaa ... tatgatatagGTTGTCAGTGAGCCAAGCTTGACAAAGTCAGGTGTGTACTGGAGCTGGAAC
EST: gi|71876366|gb|DT025421.1|DT025421
EST:     TTACCAAGGGCTATGTCTCCGAGGAAGAATCTGGAAAAAGACTTGCACAG                         GTTGTCAGTGAGCCAAGCTTGACAAAGTCAGGTGTGTACTGGAGCTGGAAC
genomic: TTACCAAGGGCTATGTCTCCGAGGAAGAATCTGGAAAAAGACTTGCACAGgtaagagaaa ... tatgatatagGTTGTCAGTGAGCCAAGCTTGACAAAGTCAGGTGTGTACTGGAGCTGGAAC
EST: gi|351029963|gb|FQ430705.1|FQ430705
EST:     TTACCAAGGGCTATGTCTCCGAGGAAGAATCTGGAAAAAGACTTGCACAG                         GTTGTCAGTGAGCCAAGCTTGACAAAGTCAGGTGTGTACTGGAGCTGGAAC
genomic: TTACCAAGGGCTATGTCTCCGAGGAAGAATCTGGAAAAAGACTTGCACAGgtaagagaaa ... tatgatatagGTTGTCAGTGAGCCAAGCTTGACAAAGTCAGGTGTGTACTGGAGCTGGAAC
EST: gi|27586041|gb|CB008736.1|CB008736
EST:     TTACCAAGGGCTATGTCTCCGAGGAAGAATCTGGAAAAAGACTTGCACAG                         GTTGTCAGTGAGCCAAGCTTGACAAAGTCAGGTGTGTACTGGAGCTGGAAC
genomic: TTACCAAGGGCTATGTCTCCGAGGAAGAATCTGGAAAAAGACTTGCACAGgtaagagaaa ... tatgatatagGTTGTCAGTGAGCCAAGCTTGACAAAGTCAGGTGTGTACTGGAGCTGGAAC
EST: gi|110373717|gb|EC938012.1|EC938012
EST:     TTACCAAGGGCTATGTCTCCGAGGAAGAATCTGGAAAAAGACTTGCACAG                         GTTGTCAGTGAGCCAAGCTTGACAAAGTCAGGTGTGTACTGGAGCTGGAAC
genomic: TTACCAAGGGCTATGTCTCCGAGGAAGAATCTGGAAAAAGACTTGCACAGgtaagagaaa ... tatgatatagGTTGTCAGTGAGCCAAGCTTGACAAAGTCAGGTGTGTACTGGAGCTGGAAC
EST: gi|83274573|gb|DV938670.1|DV938670
EST:     TTACCAAGGGCTATGTCTCCGAGGAAGAATCTGGAAAAAGACTTGCACAG                         GTTGTCAGTGAGCCAAGCTTGACAAAGTCAGGTGTGTACTGGAGCTGGAAC
genomic: TTACCAAGGGCTATGTCTCCGAGGAAGAATCTGGAAAAAGACTTGCACAGgtaagagaaa ... tatgatatagGTTGTCAGTGAGCCAAGCTTGACAAAGTCAGGTGTGTACTGGAGCTGGAAC
EST: gi|71868514|gb|DT017569.1|DT017569
EST:     TACCAAGGGCTATGTCTCCGAGGAAGAAATCTGGAAAA-GACTTGCACAG                         GTTGTCAGTGAGCCAA
genomic: TACCAAGGGCTATGTCTCCGAGGAAGAA-TCTGGAAAAAGACTTGCACAGgtaagagaaa ... tatgatatagGTTGTCAGTGAGCCAA
EST: gi|77581250|gb|DV219551.1|DV219551
EST:     TTACCAAGGGCTATGTCTCCGAGGAAGAATCTGGAAAAAGACTTGCACAG                         GTTGTCAGTGAGCCAAGCTTGACAAAGTCAGGTGTGTACTGGAGCTGGAAC
genomic: TTACCAAGGGCTATGTCTCCGAGGAAGAATCTGGAAAAAGACTTGCACAGgtaagagaaa ... tatgatatagGTTGTCAGTGAGCCAAGCTTGACAAAGTCAGGTGTGTACTGGAGCTGGAAC
EST: gi|71870299|gb|DT019354.1|DT019354
EST:     TTACCAAGGGCTATGTCTCCGAGGAAGAATCTGGAAAAAGACTTGCACAG                         GTTGTCAGTGAGCCAAGCTTGACAAAGTCAGGTGTGTACTGGAGCTGGAAA
genomic: TTACCAAGGGCTATGTCTCCGAGGAAGAATCTGGAAAAAGACTTGCACAGgtaagagaaa ... tatgatatagGTTGTCAGTGAGCCAAGCTTGACAAAGTCAGGTGTGTACTGGAGCTGGAA-
EST: gi|30320534|gb|CD003796.1|CD003796
EST:     TTACCAAGGGCTATGTCTCCGAGGAAGAATCTGGAAAAAGACTTGCACAG                         GTTGTCAGTGAGCCAAGCTTGACAAAGTCAGGTGTGTACTGGAGCTGGAAC
genomic: TTACCAAGGGCTATGTCTCCGAGGAAGAATCTGGAAAAAGACTTGCACAGgtaagagaaa ... tatgatatagGTTGTCAGTGAGCCAAGCTTGACAAAGTCAGGTGTGTACTGGAGCTGGAAC
EST: gi|110425982|gb|EC992378.1|EC992378
EST:     TTACCAAGGGCTATGTCTCCGAGGAAGAATCTGGAAAAAGACTTGCACAG                         GTTGTCAGTGAGCCAAGCTTGACAAAGTCAGGTGTGTACTGGAGCTGGAAC
genomic: TTACCAAGGGCTATGTCTCCGAGGAAGAATCTGGAAAAAGACTTGCACAGgtaagagaaa ... tatgatatagGTTGTCAGTGAGCCAAGCTTGACAAAGTCAGGTGTGTACTGGAGCTGGAAC
EST: gi|110393355|gb|EC958532.1|EC958532
EST:     TTACCAAGGGCTATGTCTCCGAGGAAGAATCTGGAAAAAGACTTGCACAG                         GTTGTCAGTGAGCCAAGCTTGACAAAGTCAGGTGTGTACTGGAGCTGGAAC
genomic: TTACCAAGGGCTATGTCTCCGAGGAAGAATCTGGAAAAAGACTTGCACAGgtaagagaaa ... tatgatatagGTTGTCAGTGAGCCAAGCTTGACAAAGTCAGGTGTGTACTGGAGCTGGAAC
EST: gi|110709757|gb|EE085497.1|EE085497
EST:     TTACCAAGGGCTATGTCTCCGAGGAAGAATCTGGAAAAAGACTTGCACAG                         GTTGTCAGTGAGCCAAGCTTGACAAAGTCAGGTGTGTACTGGAGCTGGAAC
genomic: TTACCAAGGGCTATGTCTCCGAGGAAGAATCTGGAAAAAGACTTGCACAGgtaagagaaa ... tatgatatagGTTGTCAGTGAGCCAAGCTTGACAAAGTCAGGTGTGTACTGGAGCTGGAAC
EST: gi|30251314|gb|CB969047.1|CB969047
EST:     TTACCAAGGGCTATGTCTCCGAGGAAGAATCTGGAAAAAGACTTGCACAG                         GTTGTCAGTGAGCCAAGCTTGACAAAGTCAGGTGTGTACTGGAGCTGGAAC
genomic: TTACCAAGGGCTATGTCTCCGAGGAAGAATCTGGAAAAAGACTTGCACAGgtaagagaaa ... tatgatatagGTTGTCAGTGAGCCAAGCTTGACAAAGTCAGGTGTGTACTGGAGCTGGAAC
EST: gi|110361119|gb|EC924572.1|EC924572
EST:     TTACCAAGGGCTATGTCTCCGAGGAAGAATCTGGAAAAAGACTTGCACAG                         GTTGTCAGTGAGCCAAGCTTGACAAAGTCAGGTGTGTACTGGAGCTGGAAC
genomic: TTACCAAGGGCTATGTCTCCGAGGAAGAATCTGGAAAAAGACTTGCACAGgtaagagaaa ... tatgatatagGTTGTCAGTGAGCCAAGCTTGACAAAGTCAGGTGTGTACTGGAGCTGGAAC
EST: gi|71873116|gb|DT022171.1|DT022171
EST:     TTACCAAGGGCTATGTCTCCGAGGAAGAATCTGGAAAAAGACTTGCACAG                         GTTGTCAGTGAGCCAAGCTTGACAAAGTCAGGTGTGTACTGGAGCTGGAAC
genomic: TTACCAAGGGCTATGTCTCCGAGGAAGAATCTGGAAAAAGACTTGCACAGgtaagagaaa ... tatgatatagGTTGTCAGTGAGCCAAGCTTGACAAAGTCAGGTGTGTACTGGAGCTGGAAC
EST: gi|34362856|gb|CF404441.1|CF404441
EST:     TTACCAAGGGCTATGTCTCCGAGGAAGAATCTGGAAAACGACTTGCACAG                         GTTGTCAGTGAGCCAAGCTTGACAAAGTCAGGTGTGTACTGGAGCTGGAAC
genomic: TTACCAAGGGCTATGTCTCCGAGGAAGAATCTGGAAAAAGACTTGCACAGgtaagagaaa ... tatgatatagGTTGTCAGTGAGCCAAGCTTGACAAAGTCAGGTGTGTACTGGAGCTGGAAC
EST: gi|110360450|gb|EC923561.1|EC923561
EST:     TTACCAAGGGCTATGTCTCCGAGGAAGAATCTGGAAAAAGACTTGCACAG                         GTTGTCAGTGAGCCAAGCTTGACAAAGTCAGGTGTGTACTGGAGCTGGAAC
genomic: TTACCAAGGGCTATGTCTCCGAGGAAGAATCTGGAAAAAGACTTGCACAGgtaagagaaa ... tatgatatagGTTGTCAGTGAGCCAAGCTTGACAAAGTCAGGTGTGTACTGGAGCTGGAAC
EST: gi|32245998|gb|CD711817.1|CD711817
EST:     TTACCAAGGGCTATGTCTCCGAGGAAGAATCTGGAAAAAGACTTGCACAG                         GTTGTCAGTGAGCCAAGCTTGACAAAGTCAGGTGTGTACTGGAGCTGGAAC
genomic: TTACCAAGGGCTATGTCTCCGAGGAAGAATCTGGAAAAAGACTTGCACAGgtaagagaaa ... tatgatatagGTTGTCAGTGAGCCAAGCTTGACAAAGTCAGGTGTGTACTGGAGCTGGAAC
EST: gi|110693778|gb|EE070309.1|EE070309
EST:     TTACCAAGGGCTATGTCTCCGAGGAAGAATCTGGAAAAAGACTTGCACAG                         GTTGTCAGTGAGCCAAGCTTGACAAAGTCAGGTGTGTACTGGAGCTGGAAC
genomic: TTACCAAGGGCTATGTCTCCGAGGAAGAATCTGGAAAAAGACTTGCACAGgtaagagaaa ... tatgatatagGTTGTCAGTGAGCCAAGCTTGACAAAGTCAGGTGTGTACTGGAGCTGGAAC
EST: gi|351016649|gb|FQ424076.1|FQ424076
EST:     TTACCAAGGGCTATGTCTCCGAGGAAGAATCTGGAAAAAGACTTGCACAG                         GTTGTCAGTGAGCCAAGCTTGACAAAGTCAGGTGTGTACTGGAGCTGGAAC
genomic: TTACCAAGGGCTATGTCTCCGAGGAAGAATCTGGAAAAAGACTTGCACAGgtaagagaaa ... tatgatatagGTTGTCAGTGAGCCAAGCTTGACAAAGTCAGGTGTGTACTGGAGCTGGAAC
EST: gi|110387439|gb|EC952103.1|EC952103
EST:     TTACCAAGGGCTATGTCTCCGAGGAAGAATCTGGAAAAAGACTTGCACAG                         GTTGTCAGTGAGCCAAGCTTGACAAAGTCAGGTGTGTACTGGAGCTGGAAC
genomic: TTACCAAGGGCTATGTCTCCGAGGAAGAATCTGGAAAAAGACTTGCACAGgtaagagaaa ... tatgatatagGTTGTCAGTGAGCCAAGCTTGACAAAGTCAGGTGTGTACTGGAGCTGGAAC
EST: gi|110363145|gb|EC926716.1|EC926716
EST:     TTACCAAGGGCTATGTCTCCGAGGAAGAATCTGGAAAAAGACTTGCACAG                         GTTGTCAGTGAGCCAAGCTTGACAAAGTCAGGTGTGTACTGGAGCTGGAAC
genomic: TTACCAAGGGCTATGTCTCCGAGGAAGAATCTGGAAAAAGACTTGCACAGgtaagagaaa ... tatgatatagGTTGTCAGTGAGCCAAGCTTGACAAAGTCAGGTGTGTACTGGAGCTGGAAC
EST: gi|77583645|gb|DV220853.1|DV220853
EST:     TTACCAAGGGCTATGTCTCCGAGGAAGAATCTGGAAAAAGACTTGCACAG                         GTTGTCAGTGAGCCAAGCTTGACAAAGTCAGGTGTGTACTGGAGCTGGAAC
genomic: TTACCAAGGGCTATGTCTCCGAGGAAGAATCTGGAAAAAGACTTGCACAGgtaagagaaa ... tatgatatagGTTGTCAGTGAGCCAAGCTTGACAAAGTCAGGTGTGTACTGGAGCTGGAAC
EST: gi|34319417|gb|CF372171.1|CF372171
EST:     TTANCAAGGGCTATGTCTCCGAGGAAGAATCTGGAAAAAGACTTGCACAG                         GTTGTCAGTGAGCCAAGCTTGACAAAGTCAGGTGTGTACTGGAGCTGGAAC
genomic: TTACCAAGGGCTATGTCTCCGAGGAAGAATCTGGAAAAAGACTTGCACAGgtaagagaaa ... tatgatatagGTTGTCAGTGAGCCAAGCTTGACAAAGTCAGGTGTGTACTGGAGCTGGAAC
EST: gi|110419794|gb|EC986044.1|EC986044
EST:     TTACCAAGGGCTATGTCTCCGAGGAAGAATCTGGAAAAAGACTTGCACAG                         GTTGTCAGTGAGCCAAGCTTGACAAAGTCAGGTGTGTACTGGAGCTGGAAC
genomic: TTACCAAGGGCTATGTCTCCGAGGAAGAATCTGGAAAAAGACTTGCACAGgtaagagaaa ... tatgatatagGTTGTCAGTGAGCCAAGCTTGACAAAGTCAGGTGTGTACTGGAGCTGGAAC
EST: gi|33404972|gb|CF210599.1|CF210599
EST:     TTACCAAGGGCTATGTCTCCGAGGAAGAATCTGGAAAAAGACTTGCACAG                         GTTGTCAGTGAGCCAAGCTTGACAAAGTCAGGTGTGTACTGGAGCTGGAAC
genomic: TTACCAAGGGCTATGTCTCCGAGGAAGAATCTGGAAAAAGACTTGCACAGgtaagagaaa ... tatgatatagGTTGTCAGTGAGCCAAGCTTGACAAAGTCAGGTGTGTACTGGAGCTGGAAC
EST: gi|33405057|gb|CF210684.1|CF210684
EST:     TTACCAAGGGCTATGTCTCCGAGGAAGAATCTGGAAAAAGACTTGCACAG                         GTTGTCAGTGAGCCAAGCTTGACAAAGTCAGGTGTGTACTGGAGCTGGAAC
genomic: TTACCAAGGGCTATGTCTCCGAGGAAGAATCTGGAAAAAGACTTGCACAGgtaagagaaa ... tatgatatagGTTGTCAGTGAGCCAAGCTTGACAAAGTCAGGTGTGTACTGGAGCTGGAAC
EST: gi|33409029|gb|CF214656.1|CF214656
EST:     TTACCAAGGGCTATGTCTCCGAGGAAGAATCTGGAAAAAGACTTGCACAG                         GTTGTCAGTGAGCCAAGCTCGACAAAGTCAGGTGTGTACTGGAGCTGGAAC
genomic: TTACCAAGGGCTATGTCTCCGAGGAAGAATCTGGAAAAAGACTTGCACAGgtaagagaaa ... tatgatatagGTTGTCAGTGAGCCAAGCTTGACAAAGTCAGGTGTGTACTGGAGCTGGAAC
EST: gi|349825726|gb|FQ421825.1|FQ421825
EST:     TTACCAAGGGCTATGTCTCCGAGGAAGAATCTGGAAAAAGACTTGCACAG                         GTTGTCAGTGAGCCAAGCTTGACAAAGTCAGGTGTGTACTGGAGCTGGAAC
genomic: TTACCAAGGGCTATGTCTCCGAGGAAGAATCTGGAAAAAGACTTGCACAGgtaagagaaa ... tatgatatagGTTGTCAGTGAGCCAAGCTTGACAAAGTCAGGTGTGTACTGGAGCTGGAAC
EST: gi|34320697|gb|CF373451.1|CF373451
EST:     TTACCAAGGGCTATGTCTCCGAGGAAGAATCTGGAAAAAGACTTGCACAG                         GTTGTCAGTGAGCCAAGCTTGACAAAGTCAGGTGTGTACTGGAGCTGGAAC
genomic: TTACCAAGGGCTATGTCTCCGAGGAAGAATCTGGAAAAAGACTTGCACAGgtaagagaaa ... tatgatatagGTTGTCAGTGAGCCAAGCTTGACAAAGTCAGGTGTGTACTGGAGCTGGAAC
EST: gi|110364158|gb|EC923436.1|EC923436
EST:     TTACCAAGGGCTATGTCTCCGAGGAAGAATCTGGAAAAAGACTTGCACAG                         GTTGTCAGTGAGCCAAGCTTGACAAAGTCAGGTGTGTACTGGAGCTGGAAC
genomic: TTACCAAGGGCTATGTCTCCGAGGAAGAATCTGGAAAAAGACTTGCACAGgtaagagaaa ... tatgatatagGTTGTCAGTGAGCCAAGCTTGACAAAGTCAGGTGTGTACTGGAGCTGGAAC
EST: gi|71865709|gb|DT014764.1|DT014764
EST:     TTACCAAGGGCTATGTCTCCGAGGAAGAATCTGGAAAAAGACTTGCACAG                         GTTGTCAGTGAGCCAAGCTTGACAAAGTCAGGTGTGTACTGGAGCTGGAAC
genomic: TTACCAAGGGCTATGTCTCCGAGGAAGAATCTGGAAAAAGACTTGCACAGgtaagagaaa ... tatgatatagGTTGTCAGTGAGCCAAGCTTGACAAAGTCAGGTGTGTACTGGAGCTGGAAC
EST: gi|110698753|gb|EE076611.1|EE076611
EST:     TTACCAAGGGCTATGTCTCCGAGGAAGAATCTGGAAAAAGACTTGCACAG                         GTTGTCAGTGAGCCAAGCTTGACAAAGTCAGGTGTGTACTGGAGCTGGAAC
genomic: TTACCAAGGGCTATGTCTCCGAGGAAGAATCTGGAAAAAGACTTGCACAGgtaagagaaa ... tatgatatagGTTGTCAGTGAGCCAAGCTTGACAAAGTCAGGTGTGTACTGGAGCTGGAAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttaataattgatcgagggaagggggcataaatttgattgttggtttatgatatagGTTGTCAGTGAGCCAAGCTTGACAAAGTCAGGTGTGTACTGGAGCTGGAACAAGAACTCAGCTTCATTTGAGAACCAGTTGTCTCAGGAAGCTAGTGATG
                          ataaatttgattgtt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaagagaaaaaggacttaccctttgttaataattgatcgagggaagggggcataaatttgattgttggtttatgatatagGTTGTCAGTGAGCCAAGCTTGACAAAGTCAGGTGTGTACTGGAGCTGGAACAAGAACTCAGCTTCATTTGAGAACCAGTTGTCTCAGGAAGCTAGTGATG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT