Sequence
atgc intronic sequence ATGC exonic sequence...ttgtttcagttggaatatgttagatttcatttattttttaggatacattcatcattatttgtgatcttctcctcattgctgcatgtctcaatcatttcagGCTTTGGAATGCCTTATTGAAAATCACATGCTTACGAGTGAGGAAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv19s0014g01170.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA12G25700.1 (Glycine max), 3'ss of exon 4
ttgtttcagttggaatatgttagatttcatttattttttaggatacattcatcattatttgtgatctt-ctcctcattgctgcatgtct-caatcatttcagGCTTTGGAATGCCTTATTGAAAATCACATGCTTACGAGTGAGGAAG
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tcctttctggggagat-tgtcgttcgtagcataagtacttgcacatatactttac-actagttatctgatttttccttgttatttggcaataattatgtcagGCTTTGGAATGCCTTATTGAGAATCACATGCTTACATGTGAGGAAG
upper sequence: Vv19s0014g01170.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA06G32850.1 (Glycine max), 3'ss of exon 4
ttgtttcagttggaatatgttagatttcatttattttttaggatacattcatcattatttgtgatctt-ctcctcattgctgcatgtct-caatcatttcagGCTTTGGAATGCCTTATTGAAAATCACATGCTTACGAGTGAGGAAG
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-ctttatggggagattgtcatttgtggcatatgtacttgtgtacatatttctcac-actagttatctgatttttccttcttgtttggcaataattatgacagGCTTTGGAATGCCTTATTGAGAATCACATGCTTACATGTGAGGAAG
upper sequence: Vv19s0014g01170.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: AT1G78770.1 (Arabidopsis thaliana), 3'ss of exon 4
-----------------------------------------------------------------------------ttgtttcagttggaatatgttagatttcatttattttttaggatacattcatcattatttgtgatct--tctcctcattgctgcatgtctcaatcatttcagGCTTTGGAATGCCTTATTGAAAATCACATGCTTACGAGTGAGGAAG
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gtacttctagcgccctagtcaatttgtgcatgttattttttacttactatgggaagttgcagagctaatgtgggaagataaaattcttttaatttattgtatagtagtgaaaacctgatgtacctctgtagatatcagaaaactgacatggacgtgatttctataatctatcctttcagGCTTTGGAATGCCTTATTGAGAGCCATATGCTTACATCTGAAGAAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.cattcatcattatttgtgatcttctcctcattgctgcatgtctcaatcatttcagGCTTTGGAATGCCTTATTGAAAATCACATGCTTACGAGTGAGGAAG
tcatttc CT-rich tract
atcattattt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ttgtttcagttggaatatgttagatttcatttattttttaggatacattcatcattatttgtgatcttctcctcattgctgcatgtctcaatcatttcagGCTTTGGAATGCCTTATTGAAAATCACATGCTTACGAGTGAGGAAG
- - - cagttgg
- - - - - - - - - - - - - - - - - - - - - - -cattcat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcatgtc