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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagtgcctcattgatttctttattaaatatcttgcttgtattttaaggcttttgaaattgggatgaaataattttgctctgtgcagtacagttagcattgagattgtcatatatttcttttgcagTTATACTACACGTTTTGACAAAGTTGAACTAGATAGATTAATTGAAAATGTTGCTGAACTTCCAGATCCAGAG

Basic information

species Vitis vinifera
transcript Vv18s0166g00300.t01
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351014573|gb|FQ437575.1|FQ437575
EST:     CACCCCATTGTTGATGATGTACGCAGTAGAGGTGATGCTGCTGTTAAAGA                         TTATACTGCACGTTTTGACAAAGTTGAACTAGATAGATTAATTGAAAATGT
genomic: CACCCCATTGTTGATGATGTACGCAGTAGAGGTGATGCTGCTGTTAAAGAgttagtgcct ... tcttttgcagTTATACTACACGTTTTGACAAAGTTGAACTAGATAGATTAATTGAAAATGT
EST: gi|351043930|gb|FQ431361.1|FQ431361
EST:     CACCCCATTGTCGATGATGTACGCAGTAGAGGTGATGCTGCTGTTAAAGA                         TTATACTGCACGTTTTGACAAAGTTGAACTAGATAGATTAATTGAAAATGT
genomic: CACCCCATTGTTGATGATGTACGCAGTAGAGGTGATGCTGCTGTTAAAGAgttagtgcct ... tcttttgcagTTATACTACACGTTTTGACAAAGTTGAACTAGATAGATTAATTGAAAATGT
EST: gi|349825486|gb|FQ419403.1|FQ419403
EST:     CACCCCATTGTTGATGATGTACGCAGTAGAGGTGATGCTGCTGTTAAAGA                         TTATACTGCACGTTTTGACAAAGTTGAACTAGATAGATTAATTGAAAATGT
genomic: CACCCCATTGTTGATGATGTACGCAGTAGAGGTGATGCTGCTGTTAAAGAgttagtgcct ... tcttttgcagTTATACTACACGTTTTGACAAAGTTGAACTAGATAGATTAATTGAAAATGT
EST: gi|351028553|gb|FQ444834.1|FQ444834
EST:     CACCCCATTGTTGATGATGTACGCAGTAGAGGTGATGCTGCTGTTAAAGA                         TTATACTGCACGTTTTGACAAAGTTGAACTAGATAGATTAATTGAAAATGT
genomic: CACCCCATTGTTGATGATGTACGCAGTAGAGGTGATGCTGCTGTTAAAGAgttagtgcct ... tcttttgcagTTATACTACACGTTTTGACAAAGTTGAACTAGATAGATTAATTGAAAATGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attttgctctgtgcagtacagttagcattgagattgtcatatatttcttttgcagTTATACTACACGTTTTGACAAAGTTGAACTAGATAGATTAATTGAAAATGTTGCTGAACTTCCAGATCCAGAG
                                         tatttctttt  CT-rich tract
                                    tcatatatttctttt  TA-rich tract