Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaattattcatgatgtttctgagcgaagagatggcatatgcatgtatgtgaaatggactaacataattcatgtgttgcagGGACGTTCAAACTGGTGGTTGATTATGGGAAAACTTATCTTCTTCGCATCATCAATTCTATTATGAACGAGGAAATGTTCTTCATGGTTGCTAAGCATAG

Basic information

species Vitis vinifera
transcript Vv18s0164g00100.t01
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110710242|gb|EE086416.1|EE086416
EST:     TTTCACCATTAATGGTCAACCAGGAGATCTATACAATTGTTCAAAACAAG                         GGACGTTCAAACTGGTGGTTGATTATGGGGAAACTTATCTTCTTCGCATCA
genomic: TTTCACCATTAATGGTCAACCAGGAGATCTATACAATTGTTCAAAACAAGgtaattattc ... tgtgttgcagGGACGTTCAAACTGGTGGTTGATTATGGGAAAACTTATCTTCTTCGCATCA
EST: gi|110707628|gb|EE084245.1|EE084245
EST:     TTC-CCATTAAAGGGCCACCAGGAGATCTATACAGTTGTTCCAAGACAAG                         G-ACGTTCAAAACTGGTGGTTGAATATGGGGAAAAC
genomic: T-CACCATTAATGGTCAACCAGGAGATCTATACAATTGTTCAAA-ACAAGgtaattattc ... tgtgttgcagGGACGTTCAAA-CTGGTGGTTGATTATGGG-AAAAC
EST: gi|110700922|gb|EE077999.1|EE077999
EST:     TTTCACCATTAATGGTCAACCAGGAGATCTATACAATTGTTCAAAACAAG                         GGACGTTCAAACTGGTGGTTGATTATGAGGAAA-CTTATCTTCTTCGCATC
genomic: TTTCACCATTAATGGTCAACCAGGAGATCTATACAATTGTTCAAAACAAGgtaattattc ... tgtgttgcagGGACGTTCAAACTGGTGGTTGATTATG-GGAAAACTTATCTTCTTCGCATC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aagagatggcatatgcatgtatgtgaaatggactaacataattcatgtgttgcagGGACGTTCAAACTGGTGGTTGATTATGGGAAAACTTATCTTCTTCGCATCATCAATTCTATTATGAACGAGGAAATGTTCTTCATGGTTGCTAAGCATAG
                              gactaac  putative branch site (score: 1)
                                 taacataatt  TA-rich tract