Sequence
atgc intronic sequence ATGC exonic sequence...tgcttagtgtatcctaactctattcttttgtttggtgtaaattgtaattgaatattttggatcttaacattgtattctgttggtatttgtgcaagaatagCCGGCTTAACAACAACAGCCTGACGGGTACTATTCCTATGTCATTGACTAATATCACGGCTCTGCAAGTATT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv18s0164g00070.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA10G36280.1 (Glycine max), 3'ss of exon 4
-------------------------------------------------------------------------tgcttagtgtatcctaactctattcttttgtttggtg-taaattgtaattgaatattttggatcttaacattg-----tattctgttggt--att-tgtgcaagaatagCCGGCTTAACAACAACAGCCTGACGGGTACTATTCCTATGTCATTGACTAATATCACGGCTCTGCAAGTATT
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gtgagtatacttgttctatctatgctgtggacagtctgattattttttaaaatgtcaatgactagtatttttctgttcaaggg--taaaatcttgttctggtgcttgtcaatctcttcgttcttgattttttggatatcaggatagatcttaattctgtttatctattatgtctaaggatagTCGGCTTAACAACAACAGCTTGTCGGGTCCTATTCCCATGTCACTGACCAATATTACAGCTCTCCAAGTTCT
upper sequence: Vv18s0164g00070.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA20G31320.1 (Glycine max), 3'ss of exon 4
---------------------------------------------------------------------------tgcttagtgtatcctaactctattcttttgtttggtgtaaattgta-attgaatattttggatcttaacat-----tgtattctgttgg--tatt-tgtgcaagaatagCCGGCTTAACAACAACAGCCTGACGGGTACTATTCCTATGTCATTGACTAATATCACGGCTCTGCAAGTATT
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gtgagtatacttgttctattcatacgctgtggacattctgattattttttaaaatgtcaatagctattatttttctgttcaaggg--taaaatcctgttctggtgcttgtcaatctctacgtacttgatcttttggatatcaggatggatcttaattctgttttcctattatgtctaaggatagTCGGCTTAACAATAACAGCTTGTCAGGTCCTATCCCCATGTCACTGACTAATATTACAGCTCTCCAAGTTCTMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|71873068|gb|DT022123.1|DT022123EST: ACTGGTCCCATCCCGGAGACATTGGGCAAGCTATCAAAGTTGCGCTTCCT CCGGCTTAACAACAACAGCCTGACGGGTACTATTCCTATGTCATTGACTAA
genomic: ACTGGTCCCATCCCGGAGACATTGGGCAAGCTATCAAAGTTGCGCTTCCTgtgtgtatac ... gcaagaatagCCGGCTTAACAACAACAGCCTGACGGGTACTATTCCTATGTCATTGACTAA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aattgaatattttggatcttaacattgtattctgttggtatttgtgcaagaatagCCGGCTTAACAACAACAGCCTGACGGGTACTATTCCTATGTCATTGACTAATATCACGGCTCTGCAAGTATT
tcttaac putative branch site (score: 2)
aatatttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tgcttagtgtatcctaactctattcttttgtttggtgtaaattgtaattgaatattttggatcttaacattgtattctgttggtatttgtgcaagaatagCCGGCTTAACAACAACAGCCTGACGGGTACTATTCCTATGTCATTGACTAATATCACGGCTCTGCAAGTATT
tgcttag
- - - -tgtatcc
- - - - - - - - - - - - - - tgtttgg
- - - - - - - - - - - - - - - - - - - - - - -aattgaa