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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtccacgttatcttagcccaaagtctcactcgtactgagggcattcggaagcccatgtaagtttttaaagggcctggcccaataaaagcccactgtaacttggagttgggcctagaatacgttatgattggatttgatgcttttcttgtgcgtgttgatcagATGAAGAAATGGAAGTCTTGGGAGTCGGAGACATCTTCCTTGGAATATGAATTCACAAATG

Basic information

species Vitis vinifera
transcript Vv18s0122g00930.t01
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv18s0122g00930.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA06G01820.1 (Glycine max), 3'ss of exon 4
gtaagtccacgttatcttagcccaaagtctcactcgtactgagggcattcggaagcccatgtaagtttttaaagggcctggcccaataaaagcccactgtaacttggagttgggcctagaatacgttatgattggatttgatgcttttcttgtgcgtgttgatcagATGAAGAAATGGAAGTCTTGGGAGTCGGAGACATCTTCCTTGGAATATGAATTCACAAATG
                                                       | ||| |    | |||||          | ||   | |  ||| |   |   |   |     |||| |    |  |  | ||   | |       | ||| |    | |||||||||||||||||| |||||||  |||| ||||||||| |||| ||| |||| |||||||
-------------------------------------------------------ctcatttg---tcttaaataattaccgtctatgctacctaactttttttacaaaaagaaa--agaaaagaaaagaaaagaat--aacgacaacgatatgctt----aacagATGAAGAAATGGAAGGCTTGGGAAGCGGAAACATCTTCCCTGGAGTATCAATTTACAAATG

upper sequence: Vv18s0122g00930.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA04G01730.1 (Glycine max), 3'ss of exon 4
gtaagtccacgttatcttagcccaaagtctcactcgtactgagggcattcggaagcccatgtaagtttttaaagggcctggcccaataaaagcccactgtaacttggagttgggcctagaatacgttatgattggatttgatgcttttcttgtgcgtgttgatcagATGAAGAAATGGAAGTCTTGGGAGTCGGAGACATCTTCCTTGGAATATGAATTCACAAATG
                                                           | ||  |||| ||| |   | |   |||  |     | | ||   |         | |    |  |  |  |    |    |  |      | |   || | | |||||||||||||||||| |||||||  | || ||||||||| |||| ||| |||| |||||||
---------------------------------------------------------attatatattttaaaatg---tagttaaatgcataatgagtctatacta---ccaaactttt--tttgacaaaaaaaaaaaaaacaccaccgatatat-tgcttaacagATGAAGAAATGGAAGGCTTGGGAAGCAGAAACATCTTCCCTGGAGTATCAATTTACAAATG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gggcctagaatacgttatgattggatttgatgcttttcttgtgcgtgttgatcagATGAAGAAATGGAAGTCTTGGGAGTCGGAGACATCTTCCTTGGAATATGAATTCACAAATG
                        atttgat  putative branch site (score: 5)
              ttatgatt  TA-rich tract