1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...agcatgtatttgtgtcctgtgctaggcatatgttagactttcaataaacatcttatttttggtaactcttctatttattttccttggtttcgattttcagATGGTGGCGAATCAGTGAAAAATATTGTTTATCCTGTTGTTGATGTGCGCGATGTGGCTGAATCAATTCTGCTGGCATATGAGAACCCTAATGCAGTGGG
species | Vitis vinifera |
transcript | Vv18s0122g00630.t01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GCAATCCACAATGAATGGCAGCTGCTTGCTTCTCCTATCATTTATGAAAG ATGGTGGCGAATCAGTGAAAAATATTGTTTATCCTGTTGTTGATGTGCGCGEST: gi|27755297|gb|CB036052.1|CB036052
genomic: GCAATCCACAATGAATGGCAGCTGCTTGCTTCTCCTATCATTTATGAAAGgttctttttc ... cgattttcagATGGTGGCGAATCAGTGAAAAATATTGTTTATCCTGTTGTTGATGTGCGCG
EST: GCAATCCACAATGAATGGCAGCTGCTTGCTTCTCCTATCATTTATGAAAG ATGGTGGCGAATCAGTGAAAAATATTGTTTATCCTGTTGTTGATGTGCGCGEST: gi|351055237|gb|FQ440576.1|FQ440576
genomic: GCAATCCACAATGAATGGCAGCTGCTTGCTTCTCCTATCATTTATGAAAGgttctttttc ... cgattttcagATGGTGGCGAATCAGTGAAAAATATTGTTTATCCTGTTGTTGATGTGCGCG
EST: GCAATCCACAATGAATGGCAGCTGCTTGCTTCTCCTATCATTTATGAAAG ATGGTGGCGAATCAGTGAAAAATATTGTTTATCCTGTTGTTGATGTGCGCGEST: gi|351035526|gb|FQ463371.1|FQ463371
genomic: GCAATCCACAATGAATGGCAGCTGCTTGCTTCTCCTATCATTTATGAAAGgttctttttc ... cgattttcagATGGTGGCGAATCAGTGAAAAATATTGTTTATCCTGTTGTTGATGTGCGCG
EST: GCAATCCACAATGAATGGCAGCTGCTTGCTTCTCCTATCATTTATGAAAG ATGGTGGCGAATCAGTGAAAAATATTGTTTATCCTGTTGTTGATGTGCGCGEST: gi|110393215|gb|EC958298.1|EC958298
genomic: GCAATCCACAATGAATGGCAGCTGCTTGCTTCTCCTATCATTTATGAAAGgttctttttc ... cgattttcagATGGTGGCGAATCAGTGAAAAATATTGTTTATCCTGTTGTTGATGTGCGCG
EST: ATTTATGAAAG ATGGTGGCGAATCAGTGAAAAATATTGTTTATCCTGTTGTTGATGTGCGCGEST: gi|30320733|gb|CD003995.1|CD003995
genomic: ATTTATGAAAGgttctttttc ... cgattttcagATGGTGGCGAATCAGTGAAAAATATTGTTTATCCTGTTGTTGATGTGCGCG
EST: GCAATCCACAATGAATGGCAGCTGCTTGCTTCTCCTATCATTTATGAAAG ATGGTGGCGAATCAGTGAAAAATATTGTTTATCCTGTTGTTGATGTGCGCGEST: gi|351029342|gb|FQ436736.1|FQ436736
genomic: GCAATCCACAATGAATGGCAGCTGCTTGCTTCTCCTATCATTTATGAAAGgttctttttc ... cgattttcagATGGTGGCGAATCAGTGAAAAATATTGTTTATCCTGTTGTTGATGTGCGCG
EST: GCAATCCACAATGAATGGCAGCTGCTTGCTTCTCCTATCATTT-TGAAAG ATGGTGGCGAATCAGEST: gi|352791001|gb|FQ479994.1|FQ479994
genomic: GCAATCCACAATGAATGGCAGCTGCTTGCTTCTCCTATCATTTATGAAAGgttctttttc ... cgattttcagATGGTGGCGAATCAG
EST: GCAATCCACAATGAATGGCAGCTGCTTGCTTCTCCTATCATTTATGAAAG ATGGTGGCGAATCAGTGAAAAATATTGTTTATCCTGTTGTTGATGTGCGCGEST: gi|351033973|gb|FQ463028.1|FQ463028
genomic: GCAATCCACAATGAATGGCAGCTGCTTGCTTCTCCTATCATTTATGAAAGgttctttttc ... cgattttcagATGGTGGCGAATCAGTGAAAAATATTGTTTATCCTGTTGTTGATGTGCGCG
EST: GCAATCCACAATGAATGGCAGCTGCTTGCTTCTCCTATCATTTATGAAAG ATGGTGGCGAATCAGTGAAAAATATTGTTTATCCTGTTGTTGATGTGCGCGEST: gi|351015778|gb|FQ431733.1|FQ431733
genomic: GCAATCCACAATGAATGGCAGCTGCTTGCTTCTCCTATCATTTATGAAAGgttctttttc ... cgattttcagATGGTGGCGAATCAGTGAAAAATATTGTTTATCCTGTTGTTGATGTGCGCG
EST: GCAATCCACAATGAATGGCAGCTGCTTGCTTCTCCTATCATTTATGAAAG ATGGTGGCGAATCAGTGAAAAATATTGTTTATCCTGTTGTTGATGTGCGCGEST: gi|351046584|gb|FQ453200.1|FQ453200
genomic: GCAATCCACAATGAATGGCAGCTGCTTGCTTCTCCTATCATTTATGAAAGgttctttttc ... cgattttcagATGGTGGCGAATCAGTGAAAAATATTGTTTATCCTGTTGTTGATGTGCGCG
EST: GCAATCCACAATGAATGGTAGCTGCTTGCTTCTCCTATCATTTATGAAAG ATGGGGGCAAATCEST: gi|351019824|gb|FQ439641.1|FQ439641
genomic: GCAATCCACAATGAATGGCAGCTGCTTGCTTCTCCTATCATTTATGAAAGgttctttttc ... cgattttcagATGGTGGCGAATC
EST: GCAATCCACAATGAATGGCAGCTGCTTGCTTCTCCTATCATTTATGAAAG ATGGTGGCGAATCAGTGAAAAATATTGTTTATCCTGTTGTTGATGTGCGCGEST: gi|349822332|gb|FQ412596.1|FQ412596
genomic: GCAATCCACAATGAATGGCAGCTGCTTGCTTCTCCTATCATTTATGAAAGgttctttttc ... cgattttcagATGGTGGCGAATCAGTGAAAAATATTGTTTATCCTGTTGTTGATGTGCGCG
EST: GCAATCCACAATGAATGGCAGCTGCTTGCTTCTCCTATCATTTATGAAAG ATGGTGGCGAATCAGTGAAAAATATTGTTTATCCTGTTGTTGATGTGCGCGEST: gi|110420063|gb|EC986324.1|EC986324
genomic: GCAATCCACAATGAATGGCAGCTGCTTGCTTCTCCTATCATTTATGAAAGgttctttttc ... cgattttcagATGGTGGCGAATCAGTGAAAAATATTGTTTATCCTGTTGTTGATGTGCGCG
EST: GCAATCCACAATGAATGGCAGCTGCTTGCTTCTCCTATCATTTATGAAAG ATGGTGGCGAATCAGTGAAAAATATTGTTTATCCTGTTGTTGATGTGCGCGEST: gi|351019644|gb|FQ439461.1|FQ439461
genomic: GCAATCCACAATGAATGGCAGCTGCTTGCTTCTCCTATCATTTATGAAAGgttctttttc ... cgattttcagATGGTGGCGAATCAGTGAAAAATATTGTTTATCCTGTTGTTGATGTGCGCG
EST: GCAATCCACAATGAATGGCAGCTGCTTGCTTCTCCTATCATTTATGAAAG ATGGTGGCGAATCAGTGAAAAATATTGTTTATCCTGTTGTTGATGTGCGCG
genomic: GCAATCCACAATGAATGGCAGCTGCTTGCTTCTCCTATCATTTATGAAAGgttctttttc ... cgattttcagATGGTGGCGAATCAGTGAAAAATATTGTTTATCCTGTTGTTGATGTGCGCG
aaacatcttatttttggtaactcttctatttattttccttggtttcgattttcagATGGTGGCGAATCAGTGAAAAATATTGTTTATCCTGTTGTTGATGTGCGCGATGTGGCTGAATCAATTCTGCTGGCATATGAGAACCCTAATGCAGTGGG
tggtaac putative branch site (score: 2)
ttttccttggtttc putative PPT
tcttctatttatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agcatgtatttgtgtcctgtgctaggcatatgttagactttcaataaacatcttatttttggtaactcttctatttattttccttggtttcgattttcagATGGTGGCGAATCAGTGAAAAATATTGTTTATCCTGTTGTTGATGTGCGCGATGTGGCTGAATCAATTCTGCTGGCATATGAGAACCCTAATGCAGTGGG
-gcatgta
- - - - - - - -cctgtgc
- - - - - - - - - - - - -gcatatg
- - - - - - - - - - - - - - - - - - - - - aataaac