1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...cactaatttgttctatcaatcatggcagttattgaaaactttatagtttctaagtttcctttcagtgctttatcctgccttaatctcctcttatttgcagACACAATCAGGCTATATGTGGATCATGGAAAGACGTATCTACTCCGCATGGTCAACGCTGCACTGAATGACATTCTCTTTTTCGGCATTTCTGGACATCA
species | Vitis vinifera |
transcript | Vv18s0122g00420.t01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CTTCACTATCAATGGTCAGCCTGGTGACCTCTATCCATGTTCAAAACCAG ACACAATCAGGCTATATGTGGATCATGGAAAGACGTATCTACTCCGCATGGEST: gi|30297861|gb|CB974655.1|CB974655
genomic: CTTCACTATCAATGGTCAGCCTGGTGACCTCTATCCATGTTCAAAACCAGgtgtgtacaa ... ttatttgcagACACAATCAGGCTATATGTGGATCATGGAAAGACGTATCTACTCCGCATGG
EST: CTTCACTATCAATGGTCAGCCTGGTGACCTCTATCCATGTTCAAAACCAG ACACAATCAGGCTATATGTGGATCATGGAAAGACGTATCTACTCCGCATGG
genomic: CTTCACTATCAATGGTCAGCCTGGTGACCTCTATCCATGTTCAAAACCAGgtgtgtacaa ... ttatttgcagACACAATCAGGCTATATGTGGATCATGGAAAGACGTATCTACTCCGCATGG
gtttctaagtttcctttcagtgctttatcctgccttaatctcctcttatttgcagACACAATCAGGCTATATGTGGATCATGGAAAGACGTATCTACTCCGCATGGTCAACGCTGCACTGAATGACATTCTCTTTTTCGGCATTTCTGGACATCA
ccttaat putative branch site (score: 4)
ccttaatctcctctt CT-rich tract
tcttattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cactaatttgttctatcaatcatggcagttattgaaaactttatagtttctaagtttcctttcagtgctttatcctgccttaatctcctcttatttgcagACACAATCAGGCTATATGTGGATCATGGAAAGACGTATCTACTCCGCATGGTCAACGCTGCACTGAATGACATTCTCTTTTTCGGCATTTCTGGACATCA
- - - - - - ctatcaa
- - - - - - - - - -tcatggc
- - - - - - - - - - - - - - - -ttgaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -cctttca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tctcctc