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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtataatatataatgtcatgcttgatctatcaaaaaatatataatgccatgcttgtattctgatgaaaaaacttaattggcttatgttaatagcttaactgtctcatttacttaaaatttttctttttcctccctctctctctctcaactctggcctgttcaaataatcagATGAGTTCAAGGATTTCTTCTCCAAGTATGGGAAGGTGGAGGAGCACCAGATTATACGCGACCATGAAACCAACCGTTCGCGAGGCTTTGGATTTATAAT

Basic information

species Vitis vinifera
transcript Vv18s0117g00150.t01
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv18s0117g00150.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: AT3G13224.2 (Arabidopsis thaliana), 3'ss of exon 4
gtataatatataatgtcatgcttgatctatcaaaaaatatataatgccatgcttgtattctgatgaaaaaacttaattggctta--tgttaatagcttaactgtctcatttacttaaaatttttctttttcctccctctctctctctcaactctggcctgttcaaataatcagATGAGTTCAAGGATTTCTTCTCCAAGTATGGGAAGGTGGAGGAGCACCAGATTATACGCGACCATGAAACCAACCGTTCGCGAGGCTTTGGATTTATAAT
                                                                            | | | |   | ||   |   ||  | | |  ||| | | | | |  |  ||| |   |||   |     |    |||    | |||   | |||||||||  | ||||| |||||  ||||||||||||| |||| |||||||||| |||| || ||||||||||| ||| | ||  |||| ||||| ||| ||||
---------------------------------------------------------------------------gtagacctccctcttggcatgatatttttttgctttccatgagaatgctggtttcctgtccttattgaagttggtttct----ttttctgttgatcagATGAACTTAAGGACTTCTTTGCCAAGTATGGGAACGTGGTGGAGCACCAGGTTATTCGAGACCATGAAACAAACAGGTCCAGAGGTTTTGGTTTTGTAAT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33407717|gb|CF213344.1|CF213344
EST:     CAAAACAAAGAAGATATTTGTTGGTGGATTACCATCTACAGTCACTGAAG                         ATGAGTTCAAGGATTTCTTCTCCAAGTATGGGAAGGTGGAGGAGCACCAGA
genomic: CAAAACAAAGAAGATATTTGTTGGTGGATTACCATCTACAGTCACTGAAGgtataatata ... aaataatcagATGAGTTCAAGGATTTCTTCTCCAAGTATGGGAAGGTGGAGGAGCACCAGA
EST: gi|110712411|gb|EE090004.1|EE090004
EST:     CAAAACAAAGAAGATATTTGTTGGTGGATTACCATCTACAGTCACTGAAG                         ATGAGTTCAAGGATTTCTTCTCCAAGTATGGGAAGGTGGAGGAGCACCAGA
genomic: CAAAACAAAGAAGATATTTGTTGGTGGATTACCATCTACAGTCACTGAAGgtataatata ... aaataatcagATGAGTTCAAGGATTTCTTCTCCAAGTATGGGAAGGTGGAGGAGCACCAGA
EST: gi|110719186|gb|EE096875.1|EE096875
EST:     CAAAACAAAGAAGATATTTGTTGGTGGATTACCATCTACAGTCACTGAAG                         ATGAGTTCAAGGATTTCTTCTCCAAGTATGGGAAGGTGGAGGAGCACCAGA
genomic: CAAAACAAAGAAGATATTTGTTGGTGGATTACCATCTACAGTCACTGAAGgtataatata ... aaataatcagATGAGTTCAAGGATTTCTTCTCCAAGTATGGGAAGGTGGAGGAGCACCAGA
EST: gi|71873142|gb|DT022197.1|DT022197
EST:     CAAAACAAAGAAGATATTTGTTGGTGGATTACCATCTACAGTCACTGAAG                         ATGAGTTCAAGGATTTCTTCTCCAAGTATGGGAAGGTGGAGGAGCACCAGA
genomic: CAAAACAAAGAAGATATTTGTTGGTGGATTACCATCTACAGTCACTGAAGgtataatata ... aaataatcagATGAGTTCAAGGATTTCTTCTCCAAGTATGGGAAGGTGGAGGAGCACCAGA
EST: gi|161721778|gb|FC071127.1|FC071127
EST:     CAAAACAAAGAAGATATTTGTTGGTGGATTACCATCTACAGTCACTGAAG                         ATGAGTTCAAGGATTTCTTCTCCAAGTATGGGAAGGTGGAGGAGCACCAGA
genomic: CAAAACAAAGAAGATATTTGTTGGTGGATTACCATCTACAGTCACTGAAGgtataatata ... aaataatcagATGAGTTCAAGGATTTCTTCTCCAAGTATGGGAAGGTGGAGGAGCACCAGA
EST: gi|37188093|gb|CF607444.1|CF607444
EST:     CAAAACAAAGAAGATATTTGTTGGTGGATTACCATCTACAGTCACTGAAG                         ATGAGTTCAAGGATTTCTTCTCCAAGTATGGGAAGGTGGAGGAGCACCAGA
genomic: CAAAACAAAGAAGATATTTGTTGGTGGATTACCATCTACAGTCACTGAAGgtataatata ... aaataatcagATGAGTTCAAGGATTTCTTCTCCAAGTATGGGAAGGTGGAGGAGCACCAGA
EST: gi|351030617|gb|FQ437043.1|FQ437043
EST:     CAAAACAAAGAAGATATTTGTTGGTGGATTACCATCTACAGTCACTGAAG                         ATGAGTTCAAGGATTTCTTCTCCAAGTATGGGAAGGTGGAGGAGCACCAGA
genomic: CAAAACAAAGAAGATATTTGTTGGTGGATTACCATCTACAGTCACTGAAGgtataatata ... aaataatcagATGAGTTCAAGGATTTCTTCTCCAAGTATGGGAAGGTGGAGGAGCACCAGA
EST: gi|351027170|gb|FQ440038.1|FQ440038
EST:     CAAAACAAAGAAGATATTTGTTGGTGGATTACCATCTACAGTCACTGAAG                         ATGAGTTCAAGGATTTCTTCTCCAAGTATGGGAAGGTGGAGGAGCACCAGA
genomic: CAAAACAAAGAAGATATTTGTTGGTGGATTACCATCTACAGTCACTGAAGgtataatata ... aaataatcagATGAGTTCAAGGATTTCTTCTCCAAGTATGGGAAGGTGGAGGAGCACCAGA
EST: gi|110710940|gb|EE087573.1|EE087573
EST:     CAAAACAAAGAAGATATTTGTTGGTGGATTACCATCTACAGTCACTGAAG                         ATGAGTTCAAGGATTTCTTCTCCAAGTATGGGAAGGTGGAGGAGCACCAGA
genomic: CAAAACAAAGAAGATATTTGTTGGTGGATTACCATCTACAGTCACTGAAGgtataatata ... aaataatcagATGAGTTCAAGGATTTCTTCTCCAAGTATGGGAAGGTGGAGGAGCACCAGA
EST: gi|351014903|gb|FQ438103.1|FQ438103
EST:     CAAAACAAAGAAGATATTTGTTGGTGGATTACCATCTACAGTCACTGAAG                         ATGAGTTCAAGGATTTCTTCTCCAAGTATGGGAAGGTGGAGGAGCACCAGA
genomic: CAAAACAAAGAAGATATTTGTTGGTGGATTACCATCTACAGTCACTGAAGgtataatata ... aaataatcagATGAGTTCAAGGATTTCTTCTCCAAGTATGGGAAGGTGGAGGAGCACCAGA
EST: gi|351045405|gb|FQ447670.1|FQ447670
EST:     CAAAACAAAGAAGATATTTGTTGGTGGATTACCATCTACAGTCACTGAAG                         ATGAGTTCAAGGATTTCTTCTCCAAGTATGGGAAGGTGGAGGAGCACCAGA
genomic: CAAAACAAAGAAGATATTTGTTGGTGGATTACCATCTACAGTCACTGAAGgtataatata ... aaataatcagATGAGTTCAAGGATTTCTTCTCCAAGTATGGGAAGGTGGAGGAGCACCAGA
EST: gi|351039455|gb|FQ461322.1|FQ461322
EST:     CAAAACAAAGAAGATATTTGTTGGTGGATTACCATCTACAGTCACTGAAG                         ATGAGTTCAAGGATTTCTTCTCCAAGTATGGGAAGGTGGAGGAGCACCAGA
genomic: CAAAACAAAGAAGATATTTGTTGGTGGATTACCATCTACAGTCACTGAAGgtataatata ... aaataatcagATGAGTTCAAGGATTTCTTCTCCAAGTATGGGAAGGTGGAGGAGCACCAGA
EST: gi|110707058|gb|EE083127.1|EE083127
EST:     CAAAACAAAGAAGATATTTGTTGGTGGATTACCATCTACAGTCACTGAAG                         ATGAGTTCAAGGATTTCTTCTCCAAGTATGGGAAGGTGGAGGAGCACCAGA
genomic: CAAAACAAAGAAGATATTTGTTGGTGGATTACCATCTACAGTCACTGAAGgtataatata ... aaataatcagATGAGTTCAAGGATTTCTTCTCCAAGTATGGGAAGGTGGAGGAGCACCAGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atttttctttttcctccctctctctctctcaactctggcctgttcaaataatcagATGAGTTCAAGGATTTCTTCTCCAAGTATGGGAAGGTGGAGGAGCACCAGATTATACGCGACCATGAAACCAACCGTTCGCGAGGCTTTGGATTTATAAT
                                          ttcaaataat  TA-rich tract