1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...tccctgtaaatcaatgattatttaagttgaatttaattttctccttttaattctctcttcaactaataatgtttttcttccttgttctttggtcctgcagTACACGAATAGTTTGACTTATTTAACCAATGAAGCTTTCACATCTATTCCCCCAGAGTTGGTTCCTGATTTGCAAAGAATGCTTTCTACAAATGAGTCTT
species | Vitis vinifera |
transcript | Vv18s0089g00030.t01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
tttaattctctcttcaactaataatgtttttcttccttgttctttggtcctgcagTACACGAATAGTTTGACTTATTTAACCAATGAAGCTTTCACATCTATTCCCCCAGAGTTGGTTCCTGATTTGCAAAGAATGCTTTCTACAAATGAGTCTT
aactaat putative branch site (score: 2)
tgtttttcttccttgt putative PPT
aactaataatgttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tccctgtaaatcaatgattatttaagttgaatttaattttctccttttaattctctcttcaactaataatgtttttcttccttgttctttggtcctgcagTACACGAATAGTTTGACTTATTTAACCAATGAAGCTTTCACATCTATTCCCCCAGAGTTGGTTCCTGATTTGCAAAGAATGCTTTCTACAAATGAGTCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
tccctgt
- - - -aaatcaa
- - - - - - - - - - - - - - - - - - -tttctcc
- - - - - - - - - - - - - - - - - - - - - - - - - -tctctct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caactaa