1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...ttatttgacgcttgtcaatacttcaaaatttagttccagctctcatatcccctaaatgatccttatcctctaactaatttctctggtcatggtgttatagATTAGGAAGATGAAGGGATTGAAGCAGAAGAAAGCACACTTGATGGAGATCCAGGTCAATGGTGGAACCATTGCTCAGAAAGTGGATTATGCTTATGGTT
species | Vitis vinifera |
transcript | Vv18s0072g00340.t01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AGAAAATGAAAAAATATGCTTCTGTCATTCGGGTTTTGGCTCACACTCAG ATTAGGAAGATGAAGGGATTGAAGCAGAAGAAAGCACACTTGATGGAGATCEST: gi|34544403|gb|CF512635.1|CF512635
genomic: AGAAAATGAAAAAATATGCTTCTGTCATTCGGGTTTTGGCTCACACTCAGgtactgatag ... ggtgttatagATTAGGAAGATGAAGGGATTGAAGCAGAAGAAAGCACACTTGATGGAGATC
EST: AGAAAATGAAAAAATATGCTTCTGTCATTCGGGTTTTGGCTCACACTCAG ATTAGGAAGATGAAGGGATTGAAGCAGAAGAAAGCACACTTGATGGAGATCEST: gi|349808701|gb|FQ406442.1|FQ406442
genomic: AGAAAATGAAAAAATATGCTTCTGTCATTCGGGTTTTGGCTCACACTCAGgtactgatag ... ggtgttatagATTAGGAAGATGAAGGGATTGAAGCAGAAGAAAGCACACTTGATGGAGATC
EST: AGAAAATGAAAAAATATGCTTCTGTCATTCGGGTTTTGGCTCACACTCAG ATTAGGAAGATGAAGGGATTGAAGCAGAAGAAAGCACACTTGATGGAGATCEST: gi|110724158|gb|EE099751.1|EE099751
genomic: AGAAAATGAAAAAATATGCTTCTGTCATTCGGGTTTTGGCTCACACTCAGgtactgatag ... ggtgttatagATTAGGAAGATGAAGGGATTGAAGCAGAAGAAAGCACACTTGATGGAGATC
EST: AGAAAATGAAAAAATATGCTTCTGTCATTCGGGTTTTGGCTCACACTCAG ATTAGGAAGATGAAGGGATTGAAGCANAAGAAAGCACACTTGATGGAGATCEST: gi|161713530|gb|FC064065.1|FC064065
genomic: AGAAAATGAAAAAATATGCTTCTGTCATTCGGGTTTTGGCTCACACTCAGgtactgatag ... ggtgttatagATTAGGAAGATGAAGGGATTGAAGCAGAAGAAAGCACACTTGATGGAGATC
EST: AGAAAATGAAAAAATATGCTTCTGTCATTCGGGTTTTGGCTCACACTCAG ATTAGGAAGATGAAGGGATTGAAGCAGAAGAAAGCACACTTGATGGAGATCEST: gi|71866368|gb|DT015423.1|DT015423
genomic: AGAAAATGAAAAAATATGCTTCTGTCATTCGGGTTTTGGCTCACACTCAGgtactgatag ... ggtgttatagATTAGGAAGATGAAGGGATTGAAGCAGAAGAAAGCACACTTGATGGAGATC
EST: AGAAAATGAAAAAATATGCTTCTGTCATTCGGGTTTTGGCTCACACTCAG ATTAGGAAGATGAAGGGATTGAAGCAGAAGAAAGCACACTTGATGGAGATCEST: gi|349816394|gb|FQ403769.1|FQ403769
genomic: AGAAAATGAAAAAATATGCTTCTGTCATTCGGGTTTTGGCTCACACTCAGgtactgatag ... ggtgttatagATTAGGAAGATGAAGGGATTGAAGCAGAAGAAAGCACACTTGATGGAGATC
EST: AGAAAATGAAAAAATATGCTTCTGTCATTCGGGTTTTGGCTCACACTCAG ATTAGGAAGATGAAGGGATTGAAGCAGAAGAAAGCACACTTGATGGAGATCEST: gi|71861520|gb|DT010575.1|DT010575
genomic: AGAAAATGAAAAAATATGCTTCTGTCATTCGGGTTTTGGCTCACACTCAGgtactgatag ... ggtgttatagATTAGGAAGATGAAGGGATTGAAGCAGAAGAAAGCACACTTGATGGAGATC
EST: AGAAAATGAAAAAATATGCTTCTGTCATTCGGGTTTTGGCTCACACTCAG ATTAGGAAGATEST: gi|161713678|gb|FC062818.1|FC062818
genomic: AGAAAATGAAAAAATATGCTTCTGTCATTCGGGTTTTGGCTCACACTCAGgtactgatag ... ggtgttatagATTAGGAAGAT
EST: AGAAAATGAAAAAATATGCTTCTGTCATTCGGGTTTTGGCTCACACTCAG ATTAGGAAGATGAAGGGATTGAAGCAGAAGAAAGCACACTTGATGGAGATCEST: gi|351027003|gb|FQ439863.1|FQ439863
genomic: AGAAAATGAAAAAATATGCTTCTGTCATTCGGGTTTTGGCTCACACTCAGgtactgatag ... ggtgttatagATTAGGAAGATGAAGGGATTGAAGCAGAAGAAAGCACACTTGATGGAGATC
EST: AGAAAATGAAAAAATATGCTTCTGTCATTCGGGTTTTGGCTCACACTCAG ATTAGGAAGATGAAGGGATTGAAGCAGAAGAAAGCACACTTGATGGAGATCEST: gi|351019761|gb|FQ439578.1|FQ439578
genomic: AGAAAATGAAAAAATATGCTTCTGTCATTCGGGTTTTGGCTCACACTCAGgtactgatag ... ggtgttatagATTAGGAAGATGAAGGGATTGAAGCAGAAGAAAGCACACTTGATGGAGATC
EST: AGAAAATGAAAAAATATGCTTCTGTCATTCGGGTTTTGGCTCACACTCAG ATTAGGAAGATGAAGGGATTGAAGCAGAAGAAAGCACACTTGATGGAGATCEST: gi|349816421|gb|FQ403796.1|FQ403796
genomic: AGAAAATGAAAAAATATGCTTCTGTCATTCGGGTTTTGGCTCACACTCAGgtactgatag ... ggtgttatagATTAGGAAGATGAAGGGATTGAAGCAGAAGAAAGCACACTTGATGGAGATC
EST: AGAAAATGAAAAAATATGCTTCTGTCATTCGGGTTTTGGCTCACACTCAG ATTAGGAAGATGAAGGGATTGAAGCAGAAGAAAGCACACTTGATGGAGATCEST: gi|351054391|gb|FQ450474.1|FQ450474
genomic: AGAAAATGAAAAAATATGCTTCTGTCATTCGGGTTTTGGCTCACACTCAGgtactgatag ... ggtgttatagATTAGGAAGATGAAGGGATTGAAGCAGAAGAAAGCACACTTGATGGAGATC
EST: AGAAAATGAAAAAATATGCTTCTGTCATTCGGGTTTTGGCTCACACTCAG ATTAGGAAGATGAAGGGATTGAAGCAGAAGAAAGCACACTTGATGGAGATCEST: gi|349820633|gb|FQ408462.1|FQ408462
genomic: AGAAAATGAAAAAATATGCTTCTGTCATTCGGGTTTTGGCTCACACTCAGgtactgatag ... ggtgttatagATTAGGAAGATGAAGGGATTGAAGCAGAAGAAAGCACACTTGATGGAGATC
EST: AGAAAATGAAAAAATATGCTTCTGTCATTCGGGTTTTGGCTCCCACTCCG ATTAGGAAGATGAAGGGATTGAAGCAGAAGAAAGCACACTTGAAGGAGATCEST: gi|110421655|gb|EC987955.1|EC987955
genomic: AGAAAATGAAAAAATATGCTTCTGTCATTCGGGTTTTGGCTCACACTCAGgtactgatag ... ggtgttatagATTAGGAAGATGAAGGGATTGAAGCAGAAGAAAGCACACTTGATGGAGATC
EST: AGAAAATGAAAAAATATGCTTCTGTCATTCGGGTTTTGGCTCACACTCAG ATTAGGAAGATGAAGGGATTGAAGCAGAAGAAAGCACACTTGATGGAGATCEST: gi|33401635|gb|CF207262.1|CF207262
genomic: AGAAAATGAAAAAATATGCTTCTGTCATTCGGGTTTTGGCTCACACTCAGgtactgatag ... ggtgttatagATTAGGAAGATGAAGGGATTGAAGCAGAAGAAAGCACACTTGATGGAGATC
EST: AGAAAATGAAAAAATATGCTTCTGTCATTCGGGTTTTGGCTCACACTCAG ATTAGGAAGATGAAGGGATTGAAGCAGAAGAAAGCACACTTGATGGAGATCEST: gi|349815187|gb|FQ400342.1|FQ400342
genomic: AGAAAATGAAAAAATATGCTTCTGTCATTCGGGTTTTGGCTCACACTCAGgtactgatag ... ggtgttatagATTAGGAAGATGAAGGGATTGAAGCAGAAGAAAGCACACTTGATGGAGATC
EST: AGAAAATGAAAAAATATGCTTCTGTCATTCGGGTTTTGGCTCACACTCAG ATTAGGAAGATGAAGGGATTGAAGCAGAAGAAAGCACACTTGATGGAGATCEST: gi|71871964|gb|DT021019.1|DT021019
genomic: AGAAAATGAAAAAATATGCTTCTGTCATTCGGGTTTTGGCTCACACTCAGgtactgatag ... ggtgttatagATTAGGAAGATGAAGGGATTGAAGCAGAAGAAAGCACACTTGATGGAGATC
EST: GCTCACACTCAG ATTAGGAAGATGAAGGGATTGAAGCAGAAGAAAGCACACTTGATGGAGATCEST: gi|161720179|gb|FC066762.1|FC066762
genomic: GCTCACACTCAGgtactgatag ... ggtgttatagATTAGGAAGATGAAGGGATTGAAGCAGAAGAAAGCACACTTGATGGAGATC
EST: AGAAAATGAAAAAATATGCTTCTGTCATTCGGGTTTTGGCTCACACTCAG ATTAGGAAGATGAAGGGATTGAAGCAGAAGAAAGCACACTTGATGGAGATCEST: gi|71857178|gb|DT006233.1|DT006233
genomic: AGAAAATGAAAAAATATGCTTCTGTCATTCGGGTTTTGGCTCACACTCAGgtactgatag ... ggtgttatagATTAGGAAGATGAAGGGATTGAAGCAGAAGAAAGCACACTTGATGGAGATC
EST: AGAAAATGAAAAAATATGCTTCTGTCATTCGGGTTTGGGCTCACACTCAG ATTAGGAAGATGAAGGGATTGAAGCAGAAGAAAGCACACTTGEST: gi|110369977|gb|EC934151.1|EC934151
genomic: AGAAAATGAAAAAATATGCTTCTGTCATTCGGGTTTTGGCTCACACTCAGgtactgatag ... ggtgttatagATTAGGAAGATGAAGGGATTGAAGCAGAAGAAAGCACACTTG
EST: AGAAAATGAAAAAATATGCTTCTGTCATTCGGGTTTTGGCTCACACTCAG ATTAGGAAGATGAAGGGATTGAAGCAGAAGAAAGCACACTTGATGGAGATCEST: gi|110363881|gb|EC927510.1|EC927510
genomic: AGAAAATGAAAAAATATGCTTCTGTCATTCGGGTTTTGGCTCACACTCAGgtactgatag ... ggtgttatagATTAGGAAGATGAAGGGATTGAAGCAGAAGAAAGCACACTTGATGGAGATC
EST: AAAATGAAAAAATATGCTTCTGTCATTCGGGTTTTGGCTCACACTCAG ATTAGGAAGATGAAGGGATTGAAGCAGAAGAAAGCACACTTGATGGAGATCEST: gi|71863182|gb|DT012237.1|DT012237
genomic: AAAATGAAAAAATATGCTTCTGTCATTCGGGTTTTGGCTCACACTCAGgtactgatag ... ggtgttatagATTAGGAAGATGAAGGGATTGAAGCAGAAGAAAGCACACTTGATGGAGATC
EST: AGAAAATGAAAAAATATGCTTCTGTCATTCGGGTTTTGGCTCACACTCAG ATTAGGAAGATGAAGGGATTGAAGCAGAAGAAAGCACACTTGATGGAGATCEST: gi|110364936|gb|EC928554.1|EC928554
genomic: AGAAAATGAAAAAATATGCTTCTGTCATTCGGGTTTTGGCTCACACTCAGgtactgatag ... ggtgttatagATTAGGAAGATGAAGGGATTGAAGCAGAAGAAAGCACACTTGATGGAGATC
EST: AGAAAATGAAAAAATATGCTTCTGTCATTCGGGTTTTGGCTCACACTCAG ATTAGGAAGATGAAGGGATTGAAGCAGAAGAAAGCACACTTGATGGAGATCEST: gi|110703573|gb|EE080535.1|EE080535
genomic: AGAAAATGAAAAAATATGCTTCTGTCATTCGGGTTTTGGCTCACACTCAGgtactgatag ... ggtgttatagATTAGGAAGATGAAGGGATTGAAGCAGAAGAAAGCACACTTGATGGAGATC
EST: AGAAAATGAAAAAATATGCTTCTGTCATTCGGGTTTTGGCTCACACTCAG ATTAGGAAGATGAAGGGATTGAAGCAGAAGATAGCACACTTGATGGAGATCEST: gi|349814772|gb|FQ409995.1|FQ409995
genomic: AGAAAATGAAAAAATATGCTTCTGTCATTCGGGTTTTGGCTCACACTCAGgtactgatag ... ggtgttatagATTAGGAAGATGAAGGGATTGAAGCAGAAGAAAGCACACTTGATGGAGATC
EST: AGAAAATGAAAAAATATGCTTCTGTCATTCGGGTTTTGGCTCACACTCAG ATTAGGAAGATGAAGGGATTGAAGCAGAAGAAAGCACACTTGATGGAGATCEST: gi|349810453|gb|FQ401899.1|FQ401899
genomic: AGAAAATGAAAAAATATGCTTCTGTCATTCGGGTTTTGGCTCACACTCAGgtactgatag ... ggtgttatagATTAGGAAGATGAAGGGATTGAAGCAGAAGAAAGCACACTTGATGGAGATC
EST: AGAAAATGAAAAAATATGCTTCTGTCATTCGGGTTTTGGCTCACACTCAG ATTAGGAAGATGAAGGGATTGAAGCAGAAGAAAGCACACTTGATGGAGATCEST: gi|351040455|gb|FQ434588.1|FQ434588
genomic: AGAAAATGAAAAAATATGCTTCTGTCATTCGGGTTTTGGCTCACACTCAGgtactgatag ... ggtgttatagATTAGGAAGATGAAGGGATTGAAGCAGAAGAAAGCACACTTGATGGAGATC
EST: AGAAAATGAAAAAATATGCTTCTGTCATTCGGGTTTTGGCTCACACTCAG ATTAGGAAGATGAAGGGATTGAAGCAGAAGAAAGCACACTTGATGGAGATCEST: gi|37189766|gb|CF609115.1|CF609115
genomic: AGAAAATGAAAAAATATGCTTCTGTCATTCGGGTTTTGGCTCACACTCAGgtactgatag ... ggtgttatagATTAGGAAGATGAAGGGATTGAAGCAGAAGAAAGCACACTTGATGGAGATC
EST: AGAAAATGAAAAAATATGCTTCTGTCATTCGGGTTTTGGCTCACACTCAG ATTAGGAAGATGAAGGGATTGAAGCAGAAGAAAGCACACTTGATGGAGATCEST: gi|110696314|gb|EE075067.1|EE075067
genomic: AGAAAATGAAAAAATATGCTTCTGTCATTCGGGTTTTGGCTCACACTCAGgtactgatag ... ggtgttatagATTAGGAAGATGAAGGGATTGAAGCAGAAGAAAGCACACTTGATGGAGATC
EST: AGAAAATGAAAAAATATGCTTCTGTCATTCGGGTTTTGGCTCACACTCAG ATTAGGAAGATGAAGGGATTGAAGCAGAAGAAAGCACACTTGATGGAGATCEST: gi|161714223|gb|FC064138.1|FC064138
genomic: AGAAAATGAAAAAATATGCTTCTGTCATTCGGGTTTTGGCTCACACTCAGgtactgatag ... ggtgttatagATTAGGAAGATGAAGGGATTGAAGCAGAAGAAAGCACACTTGATGGAGATC
EST: AGAAAATGAAAAAATATGCTTCTGTCATTCGGGTTTTGGCTCACACTCAG ATTAGGAAGATGAAGGGATTGAAGCAGAAGAAAGCACACTTGATGGAGATCEST: gi|110723960|gb|EE099371.1|EE099371
genomic: AGAAAATGAAAAAATATGCTTCTGTCATTCGGGTTTTGGCTCACACTCAGgtactgatag ... ggtgttatagATTAGGAAGATGAAGGGATTGAAGCAGAAGAAAGCACACTTGATGGAGATC
EST: AGAAAATGAAAAAATATGCTTCTGTCATTCGGGTTTTGGCTCACACTCAG ATTANGAAGATGAAGGGATTGAAGCAGAAGAAAGCACACTTGATGGAGATCEST: gi|349811661|gb|FQ409658.1|FQ409658
genomic: AGAAAATGAAAAAATATGCTTCTGTCATTCGGGTTTTGGCTCACACTCAGgtactgatag ... ggtgttatagATTAGGAAGATGAAGGGATTGAAGCAGAAGAAAGCACACTTGATGGAGATC
EST: AGAAAATGAAAAAATATGCTTCTGTCATTCGGGTTTTGGCTCACACTCAG ATTAGGAAGATGAAGGGATTGAAGCAGAAGAAAGCACACTTGATGGAGATCEST: gi|349825777|gb|FQ421876.1|FQ421876
genomic: AGAAAATGAAAAAATATGCTTCTGTCATTCGGGTTTTGGCTCACACTCAGgtactgatag ... ggtgttatagATTAGGAAGATGAAGGGATTGAAGCAGAAGAAAGCACACTTGATGGAGATC
EST: AGAAAATGAAAAAATATGCTTCTGTCATTCGGGTTTTGGCTCACACTCAG ATTAGGAAGATGAAGGGATTGAAGCAGAAGAAAGCACACTTGATGGAGATCEST: gi|71872704|gb|DT021759.1|DT021759
genomic: AGAAAATGAAAAAATATGCTTCTGTCATTCGGGTTTTGGCTCACACTCAGgtactgatag ... ggtgttatagATTAGGAAGATGAAGGGATTGAAGCAGAAGAAAGCACACTTGATGGAGATC
EST: AGAAAATGAAAAAATATGCTTCTGTCATTCGGGTTTTGGCTCACACTCAG ATTAGGAAGATGAAGGGATTGAAGCAGAAGAAAGCACACTTGATGGAGATCEST: gi|161720318|gb|FC071171.1|FC071171
genomic: AGAAAATGAAAAAATATGCTTCTGTCATTCGGGTTTTGGCTCACACTCAGgtactgatag ... ggtgttatagATTAGGAAGATGAAGGGATTGAAGCAGAAGAAAGCACACTTGATGGAGATC
EST: AGAAAATGAAAAAATATGCTTCTGTCATTCGGGTTTTGGCTCACACTCAG ATTAGGAAGATGAAGGGATTGAAGCAGAAGAAAGCACACTTGATGGAGATCEST: gi|349821126|gb|FQ408713.1|FQ408713
genomic: AGAAAATGAAAAAATATGCTTCTGTCATTCGGGTTTTGGCTCACACTCAGgtactgatag ... ggtgttatagATTAGGAAGATGAAGGGATTGAAGCAGAAGAAAGCACACTTGATGGAGATC
EST: AGAAAATGAAAAAATATGCTTCTGTCATTCGGGTTTTGGCTCACACTCAG ATTAGGAAGAAGAAGGGATTGAAGCAGAAGAAAGCACACTTGATGGAGATCEST: gi|27584369|gb|CB007064.1|CB007064
genomic: AGAAAATGAAAAAATATGCTTCTGTCATTCGGGTTTTGGCTCACACTCAGgtactgatag ... ggtgttatagATTAGGAAGATGAAGGGATTGAAGCAGAAGAAAGCACACTTGATGGAGATC
EST: AGAAAATGAAAAAATATGCTTCTGTCATTCGGGTTTTGGCTCACACTCAG ATTAGGAAGATGAAGGGATTGAAGCAGAAGAAAGCACACTTGATGGAGATCEST: gi|110689296|gb|EE065394.1|EE065394
genomic: AGAAAATGAAAAAATATGCTTCTGTCATTCGGGTTTTGGCTCACACTCAGgtactgatag ... ggtgttatagATTAGGAAGATGAAGGGATTGAAGCAGAAGAAAGCACACTTGATGGAGATC
EST: AGAAAATGAAAAAATATGCTTCTGTCATTCGGGTTTTGGCTCACACTCAG ATTAGGAAGATGAAGGGATTGAAGCAGAAGAAAGCACACTTGATGGAGATCEST: gi|156735646|gb|EV239767.1|EV239767
genomic: AGAAAATGAAAAAATATGCTTCTGTCATTCGGGTTTTGGCTCACACTCAGgtactgatag ... ggtgttatagATTAGGAAGATGAAGGGATTGAAGCAGAAGAAAGCACACTTGATGGAGATC
EST: AGAAAATGAAAAAATATGCTTCTGTCATTCGGGTTTTGGCTCACACTCAG ATTAGGAAGATGAAGGGATTGAAGCAGAAGAAAGCACACTTGATGGAGATCEST: gi|71858386|gb|DT007441.1|DT007441
genomic: AGAAAATGAAAAAATATGCTTCTGTCATTCGGGTTTTGGCTCACACTCAGgtactgatag ... ggtgttatagATTAGGAAGATGAAGGGATTGAAGCAGAAGAAAGCACACTTGATGGAGATC
EST: AGAAAATGAAAAAATATGCTTCTGTCATTCGGGTTTTGGCTCACACTCAG ATTAGGAAGATEST: gi|30251603|gb|CB969336.1|CB969336
genomic: AGAAAATGAAAAAATATGCTTCTGTCATTCGGGTTTTGGCTCACACTCAGgtactgatag ... ggtgttatagATTAGGAAGAT
EST: AGAAAATGAAAAAATATGCTTCTGTCATTCGGGTTTTGGCTCACACTCAG ATTAGGAAGACGAAGGGATTGAAGCAGAAGAAAGCACACTTGATGGAGATCEST: gi|30251566|gb|CB969299.1|CB969299
genomic: AGAAAATGAAAAAATATGCTTCTGTCATTCGGGTTTTGGCTCACACTCAGgtactgatag ... ggtgttatagATTAGGAAGATGAAGGGATTGAAGCAGAAGAAAGCACACTTGATGGAGATC
EST: AGAAAATGAAAAAATATGCTTCTGTCATTCGGGTTTTGGCTCACACTCAG ATTAGGAAGACGAAGGGATTGAAGCAGAAGAAAGCACACTTGATGGAGATCEST: gi|110689958|gb|EE066637.1|EE066637
genomic: AGAAAATGAAAAAATATGCTTCTGTCATTCGGGTTTTGGCTCACACTCAGgtactgatag ... ggtgttatagATTAGGAAGATGAAGGGATTGAAGCAGAAGAAAGCACACTTGATGGAGATC
EST: AGAAAATGAAAAAATATGCTTCTGTCATTCGGGTTTTGGCTCACACTCAG ATTANGAAGATGAAGGGATTGAAGCAGAAGAAAGCACACTTGATGGAGATCEST: gi|71874098|gb|DT023153.1|DT023153
genomic: AGAAAATGAAAAAATATGCTTCTGTCATTCGGGTTTTGGCTCACACTCAGgtactgatag ... ggtgttatagATTAGGAAGATGAAGGGATTGAAGCAGAAGAAAGCACACTTGATGGAGATC
EST: AGAAAATGAAAAAATATGCTTCTGTCATTCGGGTTTTGGCTCACACTCAG ATTAGGAAGATGAAGGGATTGAAGCAGAAGAAAGCACACTTGATGGAGATCEST: gi|71857285|gb|DT006340.1|DT006340
genomic: AGAAAATGAAAAAATATGCTTCTGTCATTCGGGTTTTGGCTCACACTCAGgtactgatag ... ggtgttatagATTAGGAAGATGAAGGGATTGAAGCAGAAGAAAGCACACTTGATGGAGATC
EST: AGAAAATGAAAAAATATGCTTCTGTCATTCGGGTTTTGGCTCACACTCAG ATTAGGAAGATGAAGGGATTGAAEST: gi|349807527|gb|FQ401942.1|FQ401942
genomic: AGAAAATGAAAAAATATGCTTCTGTCATTCGGGTTTTGGCTCACACTCAGgtactgatag ... ggtgttatagATTAGGAAGATGAAGGGATTGAA
EST: AGAAAATGAAAAAATATGCTTCTGTCATTCGGGTTTTGGCTCACACTCAG ATTAGGAAGATGAAGGGATTGAAGCAGAAGAAAGCACACTTGATGGAGATCEST: gi|33401621|gb|CF207248.1|CF207248
genomic: AGAAAATGAAAAAATATGCTTCTGTCATTCGGGTTTTGGCTCACACTCAGgtactgatag ... ggtgttatagATTAGGAAGATGAAGGGATTGAAGCAGAAGAAAGCACACTTGATGGAGATC
EST: AGAAAATGAAAAAATATGCTTCTGTCATTCGGGTTTTGGCTCACACTCAG ATTAGGAAGATGAAGGGATTGAAGCAGAAGAAAGCACACTTGATGGAGATCEST: gi|110685399|gb|EE062095.1|EE062095
genomic: AGAAAATGAAAAAATATGCTTCTGTCATTCGGGTTTTGGCTCACACTCAGgtactgatag ... ggtgttatagATTAGGAAGATGAAGGGATTGAAGCAGAAGAAAGCACACTTGATGGAGATC
EST: AGAAAATGAAAAAATATGCTTCTGTCATTCGGGTTTTGGCTCACACTCAG ATTAGGAAGATGAAGGGATTGAAGCAGAAGAAAGCACACTTGATGGAGATCEST: gi|30300056|gb|CB976850.1|CB976850
genomic: AGAAAATGAAAAAATATGCTTCTGTCATTCGGGTTTTGGCTCACACTCAGgtactgatag ... ggtgttatagATTAGGAAGATGAAGGGATTGAAGCAGAAGAAAGCACACTTGATGGAGATC
EST: ATGAAAAAATATGCTTCTGTCATTCGGGTTTTGGCTCACACTCAT ATTAGGAAGATGAAGGGATTGAAGCAGAAGAAAGCACACTTGATGGAGATCEST: gi|71860368|gb|DT009423.1|DT009423
genomic: ATGAAAAAATATGCTTCTGTCATTCGGGTTTTGGCTCACACTCAGgtactgatag ... ggtgttatagATTAGGAAGATGAAGGGATTGAAGCAGAAGAAAGCACACTTGATGGAGATC
EST: AGAAAATGAAAAAATATGCTTCTGTCATTCGGGTTTTGGCTCACACTCAG ATTAGGAAGATGAAGGGATTGAAGCAGAAGAAAGCACACTTGATGGAGATCEST: gi|351054990|gb|FQ440329.1|FQ440329
genomic: AGAAAATGAAAAAATATGCTTCTGTCATTCGGGTTTTGGCTCACACTCAGgtactgatag ... ggtgttatagATTAGGAAGATGAAGGGATTGAAGCAGAAGAAAGCACACTTGATGGAGATC
EST: AGAAAATGAAAAAATATGCTTCTGTCATTCGGGTTTTGGCTCACACTCAG ATTAGGAAGATGAAGGGATTGAAGCAGAAGAAAGCACACTTGATGGAGATCEST: gi|30128485|gb|CB913824.1|CB913824
genomic: AGAAAATGAAAAAATATGCTTCTGTCATTCGGGTTTTGGCTCACACTCAGgtactgatag ... ggtgttatagATTAGGAAGATGAAGGGATTGAAGCAGAAGAAAGCACACTTGATGGAGATC
EST: AGAAAATGAAAAAATATGCTTCTGTCATTCGGGTTTTGGCTCACACTCAG ATTAGGAAGATGAAGGGATTGAAGCAGAAGAAAGCACACTTGATGGAGATCEST: gi|349823297|gb|FQ400276.1|FQ400276
genomic: AGAAAATGAAAAAATATGCTTCTGTCATTCGGGTTTTGGCTCACACTCAGgtactgatag ... ggtgttatagATTAGGAAGATGAAGGGATTGAAGCAGAAGAAAGCACACTTGATGGAGATC
EST: AGAAAATGAAAAAATATGCTTCTGTCATTCGGGTTTCGGCTCACACTCAG ATTAGGAAGATGAAGGGATTGAAGCAGAAGAAAGCACACTTGATGGAGATCEST: gi|349816778|gb|FQ399646.1|FQ399646
genomic: AGAAAATGAAAAAATATGCTTCTGTCATTCGGGTTTTGGCTCACACTCAGgtactgatag ... ggtgttatagATTAGGAAGATGAAGGGATTGAAGCAGAAGAAAGCACACTTGATGGAGATC
EST: AGAAAATGAAAAAATATGCTTCTGTCATTCGGGTTTTGGCTCACACTCAG ATTAGGAAGATGAAGGGATTGAAGCAGAAGAAAGCACACTTGATGGAGATCEST: gi|110703349|gb|EE080115.1|EE080115
genomic: AGAAAATGAAAAAATATGCTTCTGTCATTCGGGTTTTGGCTCACACTCAGgtactgatag ... ggtgttatagATTAGGAAGATGAAGGGATTGAAGCAGAAGAAAGCACACTTGATGGAGATC
EST: AGAAAATGAAAAAATATGCTTCTGTCATTCGGGTTTTGGCTCACACTCAG ATTAGGAAGATGAAGGGATTGAAGCAGAAGAAAGCACACTTGATGGAGATCEST: gi|161712586|gb|FC062188.1|FC062188
genomic: AGAAAATGAAAAAATATGCTTCTGTCATTCGGGTTTTGGCTCACACTCAGgtactgatag ... ggtgttatagATTAGGAAGATGAAGGGATTGAAGCAGAAGAAAGCACACTTGATGGAGATC
EST: AGAAAATGAAAAAATATGCTTCTGTCATTCGGGTTTTGGCTCACACTCAG ATTAGGAAGATGAAGGGATTGAAGCATAAGAAAGCACACTTGATGGAGATCEST: gi|34549858|gb|CF518090.1|CF518090
genomic: AGAAAATGAAAAAATATGCTTCTGTCATTCGGGTTTTGGCTCACACTCAGgtactgatag ... ggtgttatagATTAGGAAGATGAAGGGATTGAAGCAGAAGAAAGCACACTTGATGGAGATC
EST: AGAAAATGAAAAAATATGCTTCTGTCATTCGGGTTTTGGCTCACACTCAG ATTAGGAAGATGAAGGGATTGAAGCAGAAGAAAGCACACTTGATGGAGATCEST: gi|71865250|gb|DT014305.1|DT014305
genomic: AGAAAATGAAAAAATATGCTTCTGTCATTCGGGTTTTGGCTCACACTCAGgtactgatag ... ggtgttatagATTAGGAAGATGAAGGGATTGAAGCAGAAGAAAGCACACTTGATGGAGATC
EST: AGAAAATGAAAAAATATGCTTCTGTCATTCGGGTTTTGGCTCACACTCAG ATTAGGAAGATGAAGGGATTGAAGCAGAAGAAAGCACACTTGATGGAGATCEST: gi|161717004|gb|FC064668.1|FC064668
genomic: AGAAAATGAAAAAATATGCTTCTGTCATTCGGGTTTTGGCTCACACTCAGgtactgatag ... ggtgttatagATTAGGAAGATGAAGGGATTGAAGCAGAAGAAAGCACACTTGATGGAGATC
EST: AGAAAATGAAAAAATATGCTTCTGTCATTCGGGTTTTGGCTCACACTCAG ATTAGGAAGATGAAGGGATTGAAGCAGAAGAAAGCACACTTGATGGAGATCEST: gi|161721156|gb|FC070392.1|FC070392
genomic: AGAAAATGAAAAAATATGCTTCTGTCATTCGGGTTTTGGCTCACACTCAGgtactgatag ... ggtgttatagATTAGGAAGATGAAGGGATTGAAGCAGAAGAAAGCACACTTGATGGAGATC
EST: AGAAAATGAAAAAATATGCTTCTGTCATTCGGGTTTTGGCTCACACTCAG ATTAGGAAGATGAAGGGATTGAAGCAGAAGAAAGCACACTTGATGGAGATCEST: gi|30130215|gb|CB915554.1|CB915554
genomic: AGAAAATGAAAAAATATGCTTCTGTCATTCGGGTTTTGGCTCACACTCAGgtactgatag ... ggtgttatagATTAGGAAGATGAAGGGATTGAAGCAGAAGAAAGCACACTTGATGGAGATC
EST: AGAANATGAAAAAATATGCTTCTGTCATTCGGGTTTTGGCTCACACTCAG ATTAGGAAGATGAAGGGATTGAAGCAGAAGAAAGCACACTTGATGGAGEST: gi|351032116|gb|FQ460373.1|FQ460373
genomic: AGAAAATGAAAAAATATGCTTCTGTCATTCGGGTTTTGGCTCACACTCAGgtactgatag ... ggtgttatagATTAGGAAGATGAAGGGATTGAAGCAGAAGAAAGCACACTTGATGGAG
EST: AGAAAATGAAAAAATATGCTTCTGTCATTCGGGTTTTGGCTCACACTCAG ATTAGGAAGATGAAGGGATTGAAGCAGAAGAAAGTACACTTGATGGAGATCEST: gi|71863735|gb|DT012790.1|DT012790
genomic: AGAAAATGAAAAAATATGCTTCTGTCATTCGGGTTTTGGCTCACACTCAGgtactgatag ... ggtgttatagATTAGGAAGATGAAGGGATTGAAGCAGAAGAAAGCACACTTGATGGAGATC
EST: AGAAAATGAAAAAATATGCTTCTGTCATTCGGGTTTTGGCTCACACTCAG ATTAGGAAGATGEST: gi|71865086|gb|DT014141.1|DT014141
genomic: AGAAAATGAAAAAATATGCTTCTGTCATTCGGGTTTTGGCTCACACTCAGgtactgatag ... ggtgttatagATTAGGAAGATG
EST: AGAAAATGAAAAAATATGCTTCTGTCATTCGGGTTTTGGCTCACACTCAG ATTAGGAAGATGAAGGGATTGAAGCAGAAGAAAGCACACTTGATGGAGATCEST: gi|349811855|gb|FQ410652.1|FQ410652
genomic: AGAAAATGAAAAAATATGCTTCTGTCATTCGGGTTTTGGCTCACACTCAGgtactgatag ... ggtgttatagATTAGGAAGATGAAGGGATTGAAGCAGAAGAAAGCACACTTGATGGAGATC
EST: AGAAAATGAAAAAATATGCTTCTGTCATTCGGGTTTTGGCTCACACTCAG ATTAGGAAGATGAAGGGATTGAAGCAGAAGAAAGCACACTTGATGGAGATCEST: gi|349819812|gb|FQ404558.1|FQ404558
genomic: AGAAAATGAAAAAATATGCTTCTGTCATTCGGGTTTTGGCTCACACTCAGgtactgatag ... ggtgttatagATTAGGAAGATGAAGGGATTGAAGCAGAAGAAAGCACACTTGATGGAGATC
EST: AGAAAATGAAAAAATATGCTTCTGTCATTCGGGTTTTGGCTCACACTCAG ATTAGGAAGATGAAGGGATTGAAGCAGAAGAAAGCACACTTGATGGAGATCEST: gi|161712761|gb|FC061985.1|FC061985
genomic: AGAAAATGAAAAAATATGCTTCTGTCATTCGGGTTTTGGCTCACACTCAGgtactgatag ... ggtgttatagATTAGGAAGATGAAGGGATTGAAGCAGAAGAAAGCACACTTGATGGAGATC
EST: AGAAAATGAAAAAATATGCT-CTGTCATTCGGGTTTTGGCTCACACTCAG ATTAGGAAGATGAAGGGATTGAAGCAGAAGAAAGCACACTTGATGGAGATCEST: gi|161717780|gb|FC064729.1|FC064729
genomic: AGAAAATGAAAAAATATGCTTCTGTCATTCGGGTTTTGGCTCACACTCAGgtactgatag ... ggtgttatagATTAGGAAGATGAAGGGATTGAAGCAGAAGAAAGCACACTTGATGGAGATC
EST: AGAAAATGAAAAAATATGCTTCTGTCATTCGGGTTTTGGCTCACACTCAG ATTAGGAAGATGAAGGGATTGAAGCAGAAGAAAGCACACTTGATGGAGATCEST: gi|161715254|gb|FC064872.1|FC064872
genomic: AGAAAATGAAAAAATATGCTTCTGTCATTCGGGTTTTGGCTCACACTCAGgtactgatag ... ggtgttatagATTAGGAAGATGAAGGGATTGAAGCAGAAGAAAGCACACTTGATGGAGATC
EST: AGAAAATGAAAAAATATGCTTCTGTCATTCGGGTTTTGGCTCACACTCAG ATTAGGAAGATGAAGGGATTGAAGCAGAAGAAAGCACACTTGATGGAGATC
genomic: AGAAAATGAAAAAATATGCTTCTGTCATTCGGGTTTTGGCTCACACTCAGgtactgatag ... ggtgttatagATTAGGAAGATGAAGGGATTGAAGCAGAAGAAAGCACACTTGATGGAGATC
tatcccctaaatgatccttatcctctaactaatttctctggtcatggtgttatagATTAGGAAGATGAAGGGATTGAAGCAGAAGAAAGCACACTTGATGGAGATCCAGGTCAATGGTGGAACCATTGCTCAGAAAGTGGATTATGCTTATGGTT
aactaat putative branch site (score: 2)
taactaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttatttgacgcttgtcaatacttcaaaatttagttccagctctcatatcccctaaatgatccttatcctctaactaatttctctggtcatggtgttatagATTAGGAAGATGAAGGGATTGAAGCAGAAGAAAGCACACTTGATGGAGATCCAGGTCAATGGTGGAACCATTGCTCAGAAAGTGGATTATGCTTATGGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - -gcttgtc
- - - - - - - - - - - tcaaaat
- - - - - - - - - - - - - - - - - - -agctctc
- - - - - - - - - - - - - - - - - - - - - - - -tccccta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aactaat