Sequence
atgc intronic sequence ATGC exonic sequence...taatatttattgatgttctcttctagtgaaatgtttgggttttgttaatcctttgattttttaactcttatcagttgagttaatgctatatattttacagACTACCTACGAGAATTTCCGGTACAGAGCTGACAACAGGATCAATGTGTATGACCGTGGGTGTGTGAATAATTTTCTTGAAGTATTCTGCTCAAAGATAA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv18s0072g00240.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA20G30860.1 (Glycine max), 3'ss of exon 3
taatatttattgatgtt---ctcttctagtgaaatgtttgggttttgttaatcctttgattttttaactcttatcagttgagttaatgctatatattttacagACTACCTACGAGAATTTCCGGTACAGAGCTGACAACAGGATCAATGTGTATGACCGTGGGTGTGTGAATAATTTTCTTGAAGTATTCTGCTCAAAGATAA
|| ||| | || | |||||| | | | | | | | || | | | | | || |||| || |||| ||| | | | | ||||||||||| || |||||||||||||||||||| |||||||||||| | | |||| || ||| | ||||||||||| ||||| || ||| |||| |||
caaaattgttcaatctaaaatacttctattattgtttcttgagtgtttttgtgtt---acatgaatatgctcatcatttaggttagtgccttttgtctcgcagACTACCTATGAAAATTTCCGGTACAGAGCTGAAGGCAGGATCAATGTTTTTAACCGGGGTTGTTTAAATAATTTTCTGGAAGTGTTTTGCACAAAAGTAA
upper sequence: Vv18s0072g00240.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA02G08790.1 (Glycine max), 3'ss of exon 4
------taatatttattgatgttctcttctagtgaaatgtttgggttttgttaatcctttgattttttaactcttatcagttgagttaatgctatatattttacagACTACCTACGAGAATTTCCGGTACAGAGCTGACAACAGGATCAATGTGTATGACCGTGGGTGTGTGAATAATTTTCTTGAAGTATTCTGCTCAAAGATAA
||||| | || || | | || | ||||| |||| | || | |||| ||| | | | ||| | | | | | | |||| ||||||||||| ||||| ||||| |||||||| || |||||||||||||| || |||| || ||| | || ||||| || |||||||| || |||| | |
agcttataataataat-actgatttattttc-tgaaac-tttgattcttaagagcccttgtgtttcaagaatatcttca--tcacctggt-taacttgttttgcagACTACCTATGAGAACTTCCGCTACAGAGCCGATAACAGGATCAATGTTTACAACCGGGGTTGTTTAAACAATTTCCTAGAAGTATTTTGTACAAAAGTGA
upper sequence: Vv18s0072g00240.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA16G27910.1 (Glycine max), 3'ss of exon 4
taatatttattgatgttctcttctagtgaaatgtttgggttttgttaatcctttgattttttaact---cttatcagttgagttaatgctatatattttacagACTACCTACGAGAATTTCCGGTACAGAGCTGACAACAGGATCAATGTGTATGACCGTGGGTGTGTGAATAATTTTCTTGAAGTATTCTGCTCAAAGATAA
||| ||||| || | | ||||| |||| | || | |||| ||| | | | |||| || | | | | | |||| ||||||||||| ||||| ||||| |||||||| || |||||||||||||| || | | || ||| | || ||||| || |||||||| || |||| | |
taaattttatagaaaaccatattc--tgaaac-tttgattcttaagagcccttgtgtttcaagaatatcttcatcacctggttgattataacttgttttgcagACTACCTATGAGAACTTCCGCTACAGAGCCGATAACAGGATCAATGTTTACAATCTGGGTTGTTTTAACAATTTCCTAGAAGTATTTTGTACAAAAGTGA
upper sequence: Vv18s0072g00240.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA10G36730.1 (Glycine max), 3'ss of exon 4
---taatatttattgatgttctcttctagtgaaatgtttgggttttgttaatcctttgattttttaactcttatcagttgagttaatgctatatattttacagACTACCTACGAGAATTTCCGGTACAGAGCTGACAACAGGATCAATGTGTATGACCGTGGGTGTGTGAATAATTTTCTTGAAGTATTCTGCTCAAAGATAA
| || | |||||| | | | ||| | || | | | | | | |||| | |||| ||| | | || ||||||||||| || ||||||||||||||||||||| ||||||||||| | | |||| || || | ||||||||||| ||| | || ||| |||| |||
ccacgctgctttatctaaaatacttctattattgtttctggagagtttttgtgtt---acatgaatatcttcatcattcaggttattgcctcttgtcttgcagACTACCTATGAAAATTTCCGGTACAGAGCTGACGGAAGGATCAATGTTTTTAACCGGGGCTGCTTAAATAATTTTCTGGAAATGTTTTGCACAAAAGTAA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.taatcctttgattttttaactcttatcagttgagttaatgctatatattttacagACTACCTACGAGAATTTCCGGTACAGAGCTGACAACAGGATCAATGTGTATGACCGTGGGTGTGTGAATAATTTTCTTGAAGTATTCTGCTCAAAGATAA
ttaatgctatatattt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
taatatttattgatgttctcttctagtgaaatgtttgggttttgttaatcctttgattttttaactcttatcagttgagttaatgctatatattttacagACTACCTACGAGAATTTCCGGTACAGAGCTGACAACAGGATCAATGTGTATGACCGTGGGTGTGTGAATAATTTTCTTGAAGTATTCTGCTCAAAGATAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - tctcttc
- - - - - - - - - - - - - - - -tgtttgg