1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...ttttatgattatctaataatcattattccttgttctcttgcaatctctggatcagttttttatatgttgattttcttcataatttggactattgttgcagAAAGAGATGCAGATTTCTTTAAAACAGAAAATAGTTGGAGAGCCTATTGGTGATACACTATTTGGAAAAACT
species | Vitis vinifera |
transcript | Vv18s0041g01830.t01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CATGTGCAGAAATGGCCATATATCTGATGCTGGGACTTCTCCGGAAGCAA AAAGAGATGCAGATTTCTTTAAAACAGAAAATAGTTGGAGAGCCTATTGGTEST: gi|110703611|gb|EE080608.1|EE080608
genomic: CATGTGCAGAAATGGCCATATATCTGATGCTGGGACTTCTCCGGAAGCAAgtatgttatt ... attgttgcagAAAGAGATGCAGATTTCTTTAAAACAGAAAATAGTTGGAGAGCCTATTGGT
EST: CATGTGCAGAAATGGCCATATATCTGATGCTGGGACTTCTCCGGAAGCAA AAAGAGATGCAGATTTCTTTAAAACAGAAAATAGTTGGAGAGCCTATTGGTEST: gi|71863583|gb|DT012638.1|DT012638
genomic: CATGTGCAGAAATGGCCATATATCTGATGCTGGGACTTCTCCGGAAGCAAgtatgttatt ... attgttgcagAAAGAGATGCAGATTTCTTTAAAACAGAAAATAGTTGGAGAGCCTATTGGT
EST: CATGTGCAGAAATGGCCATATATCTGATGCTGGGACTTCTCCGGAAGCAA AAAGAGATGCAGATTTCTTTAAAACAGAAAATAGTTGGAGAGCCTATTGGT
genomic: CATGTGCAGAAATGGCCATATATCTGATGCTGGGACTTCTCCGGAAGCAAgtatgttatt ... attgttgcagAAAGAGATGCAGATTTCTTTAAAACAGAAAATAGTTGGAGAGCCTATTGGT
tctggatcagttttttatatgttgattttcttcataatttggactattgttgcagAAAGAGATGCAGATTTCTTTAAAACAGAAAATAGTTGGAGAGCCTATTGGTGATACACTATTTGGAAAAACT
tgttgat putative branch site (score: 4)
ttttttatatgttgat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttttatgattatctaataatcattattccttgttctcttgcaatctctggatcagttttttatatgttgattttcttcataatttggactattgttgcagAAAGAGATGCAGATTTCTTTAAAACAGAAAATAGTTGGAGAGCCTATTGGTGATACACTATTTGGAAAAACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - -ttccttg
- - - - - - - - - - - - - - - - - ctcttgc
- - - - - - - - - - - - - - - - - - - - - - ctctgga