Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tttgtatagaatcagctctatcagcatcggtgctacgatggggccgagtttaggaaatgctttgattatcgtcctagcaactctgatccttttgtttcagGTGACTTGAAGCCTGGGGCTGATGTCAAAATCACAGGACCTGTTGGGAAAGAAATGCTTATGCCAAAAGATCCAAATGCCACTGTCATAATG

Basic information

species Vitis vinifera
transcript Vv18s0001g14450.t01
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv18s0001g14450.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: LOC_Os06g01850.1 (Oryza sativa), 3'ss of exon 3
tttgtatagaatcagctctatcagcatcggtgctacgatggggccgagtttaggaaatgctttgattatcgtc----ctagcaact--ctgatccttttgtttcagGTGACTTGAAGCCTGGGGCTGATGTCAAAATCACAGGACCTGTTGGGAAAGAAATGCTTATGCCAAAAGATCCAAATGCCACTGTCATAATG
     ||  || | ||  ||| |  ||      | | ||  |     || |   |  | ||||       |||    ||  || ||   | | | |  |  |  ||||||||||||||||||  |||||||||| || || ||||| || || ||||||||||| ||||| |||||||| ||||| | | | ||||||
-----atgtaacctgca-tataatgattctccattcaataagtttatgtctcacatctactttttgcggggtcatgtctcacatctacttcaccttgctaatatagGTGACTTGAAGCCTGGTTCTGATGTCAAGATAACCGGACCAGTAGGCAAAGAAATGCTCATGCCCAAAGATCCCAATGCTAATATTATAATG

upper sequence: Vv18s0001g14450.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA02G05350.1 (Glycine max), 3'ss of exon 4
-------------------------------------tttgtatagaatcagctctatcagcatcggtgctacgatggggccgagtttaggaaatgctttgattatcgtcctagcaactctgatccttttgtttcagGTGACTTGAAGCCTGGGGCTGATGTCAAAATCACAGGACCTGTTGGGAAAGAAATGCTTATGCCAAAAGATCCAAATGCCACTGTCATAATG
                                      |   | | | | |||| ||||    | |||  |   |    |      | | |  ||       | ||   || |  |  | |  |||| ||  | |||||||| ||||||| || ||||| || | ||| || |||||||||||||||||||||||||||||||||||||||||||||||  |||| |||
gtaaggatgagtagttttagattttatataatgtaggctacaagaaatttagctatatcttttttggttattttactttgttatactaatggtatctacccttcatttaccaattatttatattcctctttatgcagGTGACCTGAAGCCAGGAGCTGAAGTAACAATAACTGGACCTGTTGGGAAAGAAATGCTTATGCCAAAAGATCCAAATGCCACCATCATCATG

upper sequence: Vv18s0001g14450.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA16G23710.1 (Glycine max), 3'ss of exon 4
-------------------------------------tttgtatagaatcagctctatcagcatcggt-gctacgatggggccgagtttaggaaatgctttgattatcgtcctagcaactctgatccttttgtttcagGTGACTTGAAGCCTGGGGCTGATGTCAAAATCACAGGACCTGTTGGGAAAGAAATGCTTATGCCAAAAGATCCAAATGCCACTGTCATAATG
                                      | | | | | | || | ||||    | ||| | |    |  |    | |  | |  |        |  |   ||    |  | |  |||| ||  |||||||||| ||||||| || ||||| || | ||| || |||||||||||||||||||||||||||||||||||||| ||||||||  |||| |||
gtaaggatgagtagttttagattttacataatgtaggctggaagaaatttagttatatcgtttttggttgatttactttgttatactaaatggtacatacccttcttttaccatttatttatattcctctttattcagGTGACCTGAAGCCAGGAGCTGAAGTAACAATAACTGGACCTGTTGGGAAAGAAATGCTTATGCCAAAAGATCCTAATGCCACCATCATCATG

upper sequence: Vv18s0001g14450.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA11G08230.1 (Glycine max), 3'ss of exon 4
tttgtatagaatcagctctatcagcatcggt-gctacgatggggccgagtttaggaaatgctttgattatcgtcctagcaactctgatccttttgtttcagGTGACTTGAAGCCTGGGGCTGATGTCAAAATCACAGGACCTGTTGGGAAAGAAATGCTTATGCCAAAAGATCCAAATGCCACTGTCATAATG
 | ||      ||   |||   |  ||   |    |  ||| |      ||      ||  ||  ||| |    | | ||  ||||  | | ||  |||||| ||||||||||| || || || || || || || ||||||||||| |||||||||||||||||||||||||| ||||| || ||||| |||
-tagttatatttctcatctgagataattaatcaagaaaatgtgtggtttttccttggatatttacattttatgacaatcacttctggccatgtttattcagGCGACTTGAAGCCAGGAGCCGAAGTAAAGATTACTGGACCTGTTGGTAAAGAAATGCTTATGCCAAAAGATCCTAATGCAACCGTCATCATG

upper sequence: Vv18s0001g14450.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: AT5G66190.2 (Arabidopsis thaliana), 3'ss of exon 4
tttgtatagaatcagctctatcagcatcggtgctacgatggggccgagtttaggaaatgctttgattatcgtcctagcaactctgatccttttgttt--cagGTGACTTGAAGCCTGGGGCTGATGTCAAAATCACAGGACCTGTTGGGAAAGAAATGCTTATGCCAAAAGATCCAAATGCCACTGTCATAATG
           | ||    |  | ||  |   ||  |||||  |   ||||| |    | ||  | | |  || |||    | ||||  |   ||||  |||||||||||||||| || | ||| |  || ||||| ||||||||||| || |||||||||||||||||||| || ||||||||  |||| |||
----------gtaagaaagaagaacaatgtgtctgtgatggatc---gtttacg----gtttaaactgt--tcttagtgtttgtgatgttcgggtttttcagGTGACTTGAAGCCGGGTGATGAAGCTAAGATCACTGGACCTGTTGGCAAGGAAATGCTTATGCCAAAAGACCCCAATGCCACCATCATCATG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110372040|gb|EC936182.1|EC936182
EST:     CACCAATGACCAAGGAGAGATAGTTAAAGGAGTTTGCTCAAATTTCTTGT                         GTGACTTGAAGCCTGGGGCTGATGTCAAAATCACAGGACCTGTTGGGAAAG
genomic: CACCAATGACCAAGGAGAGATAGTTAAAGGAGTTTGCTCAAATTTCTTGTgtaagtctct ... tttgtttcagGTGACTTGAAGCCTGGGGCTGATGTCAAAATCACAGGACCTGTTGGGAAAG
EST: gi|32268295|gb|CD717454.1|CD717454
EST:     GACCAAGGAGAGATAGTTAAAGGAGTTTGCTCAAATTTCTTGT                         GTGACTTGAAGCCTGGGGCTGATGTCAAAATCACAGGACCTGTTGGGAAAG
genomic: GACCAAGGAGAGATAGTTAAAGGAGTTTGCTCAAATTTCTTGTgtaagtctct ... tttgtttcagGTGACTTGAAGCCTGGGGCTGATGTCAAAATCACAGGACCTGTTGGGAAAG
EST: gi|351024744|gb|FQ430569.1|FQ430569
EST:     CACCAATGACCAAGGAGAGATAGTTAAAGGAGTTTGCTCAAATTTCTTGT                         GTGACTTGAAGCCTGGGGCTGATGTCAAAATCACAGGACCTGTTGGGAAAG
genomic: CACCAATGACCAAGGAGAGATAGTTAAAGGAGTTTGCTCAAATTTCTTGTgtaagtctct ... tttgtttcagGTGACTTGAAGCCTGGGGCTGATGTCAAAATCACAGGACCTGTTGGGAAAG
EST: gi|351046424|gb|FQ453040.1|FQ453040
EST:     CACCAATGACCAAGGAGAGATAGTTAAAGGAGTTTGCTCAAATTTCTTGT                         GTGACTTGAAGCCTGGGGCTGATGTCAAAATCACAGGACCTGTTGGGAAAG
genomic: CACCAATGACCAAGGAGAGATAGTTAAAGGAGTTTGCTCAAATTTCTTGTgtaagtctct ... tttgtttcagGTGACTTGAAGCCTGGGGCTGATGTCAAAATCACAGGACCTGTTGGGAAAG
EST: gi|349811782|gb|FQ410579.1|FQ410579
EST:     CACCAATGACCCAGGAGAGATAGTTAAAGGAGTTTGCTCAAATTTCTTGT                         GTGACTTGAAGCCTGGGGTTGATGTCAAAATCACAGGACCTGTTGGGA
genomic: CACCAATGACCAAGGAGAGATAGTTAAAGGAGTTTGCTCAAATTTCTTGTgtaagtctct ... tttgtttcagGTGACTTGAAGCCTGGGGCTGATGTCAAAATCACAGGACCTGTTGGGA
EST: gi|351044400|gb|FQ452952.1|FQ452952
EST:     CACCAATGACCAAGGAGAGATAGTTAAAGGAGTTTGCTCAAATTTCTTGT                         GTGACTTGAAGCCTGGGGCTGATGTCAAAATCACAGGACCTGTTGGGAAAG
genomic: CACCAATGACCAAGGAGAGATAGTTAAAGGAGTTTGCTCAAATTTCTTGTgtaagtctct ... tttgtttcagGTGACTTGAAGCCTGGGGCTGATGTCAAAATCACAGGACCTGTTGGGAAAG
EST: gi|351045818|gb|FQ441003.1|FQ441003
EST:     CACCAATGACCAAGGAGAGGTAGTTAAAGGAGTTTGCTCAAATTTCTTGT                         GTGACTTGAAGCCTGGGGCTGATGTCAAAATCACAGGACCTGTTGGGAAAG
genomic: CACCAATGACCAAGGAGAGATAGTTAAAGGAGTTTGCTCAAATTTCTTGTgtaagtctct ... tttgtttcagGTGACTTGAAGCCTGGGGCTGATGTCAAAATCACAGGACCTGTTGGGAAAG
EST: gi|351046370|gb|FQ452986.1|FQ452986
EST:     CACCAATGACCAAAGAGAGGTAGTTAAAGGAGTTTGCTCAAATTTCTTGT                         GTGACTTGAAGCCTGGGGCTGATGTCAAAATCACAGGACCTGTTGGG
genomic: CACCAATGACCAAGGAGAGATAGTTAAAGGAGTTTGCTCAAATTTCTTGTgtaagtctct ... tttgtttcagGTGACTTGAAGCCTGGGGCTGATGTCAAAATCACAGGACCTGTTGGG
EST: gi|351052122|gb|FQ455415.1|FQ455415
EST:     CACCAATGACCGAGGAGAGATAGTTAAAGGAGTTTGCTCAAATTTCTTGT                         GTGACTTGAAGCCTGGGGCTGATGTCAAAATCACAGGACCTGTTGGGAAAG
genomic: CACCAATGACCAAGGAGAGATAGTTAAAGGAGTTTGCTCAAATTTCTTGTgtaagtctct ... tttgtttcagGTGACTTGAAGCCTGGGGCTGATGTCAAAATCACAGGACCTGTTGGGAAAG
EST: gi|351042242|gb|FQ442709.1|FQ442709
EST:     CACCAATGACCAAGGAGAGGTAGTTAAAGGAGTTTGCTCAAATTTCTTGT                         GTGACTTGAAGCCTGGGGCTGATGTCAAAATCACAGGACCTGTTGGGAAAG
genomic: CACCAATGACCAAGGAGAGATAGTTAAAGGAGTTTGCTCAAATTTCTTGTgtaagtctct ... tttgtttcagGTGACTTGAAGCCTGGGGCTGATGTCAAAATCACAGGACCTGTTGGGAAAG
EST: gi|351032748|gb|FQ462462.1|FQ462462
EST:     CACCAATGACCAAGGAGAGATAGTTAAAGGAGTTTGCTCAAATTTCTTGT                         GTGACTTGAAGCCTGGGGCTGATGTCAAAATCACAGGACCTGTTGGGAAAG
genomic: CACCAATGACCAAGGAGAGATAGTTAAAGGAGTTTGCTCAAATTTCTTGTgtaagtctct ... tttgtttcagGTGACTTGAAGCCTGGGGCTGATGTCAAAATCACAGGACCTGTTGGGAAAG
EST: gi|351019671|gb|FQ439488.1|FQ439488
EST:     CACCAATGACCAAGGAGAGATAGTTAAAGGAGTTTGCTCAAATTTCTTGT                         GTGACTTGAAGCCTGGGGCTGATGTCAAAATCACAGGACCTGTTGGGAAAG
genomic: CACCAATGACCAAGGAGAGATAGTTAAAGGAGTTTGCTCAAATTTCTTGTgtaagtctct ... tttgtttcagGTGACTTGAAGCCTGGGGCTGATGTCAAAATCACAGGACCTGTTGGGAAAG
EST: gi|351055385|gb|FQ441983.1|FQ441983
EST:     CACCAATGACCAAGGAGAGATAGTTAAAGGAGTTTGCTCAAATTTCTTGT                         GTGACTTGAAGCCTGGGGCTGATGTCAAAATCACAGGACCTGTTGGGAAAG
genomic: CACCAATGACCAAGGAGAGATAGTTAAAGGAGTTTGCTCAAATTTCTTGTgtaagtctct ... tttgtttcagGTGACTTGAAGCCTGGGGCTGATGTCAAAATCACAGGACCTGTTGGGAAAG
EST: gi|349825116|gb|FQ415663.1|FQ415663
EST:     CACCAATGACCAAGGAGAGATAGTTAAAGGAGTTTGCTCAAATTTCTTGT                         GTGACTTGAAGCCTGGGGCTGATGTCAAAATCACAGGACCTGTTGGGAAAG
genomic: CACCAATGACCAAGGAGAGATAGTTAAAGGAGTTTGCTCAAATTTCTTGTgtaagtctct ... tttgtttcagGTGACTTGAAGCCTGGGGCTGATGTCAAAATCACAGGACCTGTTGGGAAAG
EST: gi|351039066|gb|FQ457741.1|FQ457741
EST:     CACCAATGACCAAGGAGAGGTAGTTAAAGGAGTTTGCTCAAATTTCTTGT                         GTGACTTGAAGCCTGGGGCTGATGTCAAAATCACAGGACCTGTTGGGAAAG
genomic: CACCAATGACCAAGGAGAGATAGTTAAAGGAGTTTGCTCAAATTTCTTGTgtaagtctct ... tttgtttcagGTGACTTGAAGCCTGGGGCTGATGTCAAAATCACAGGACCTGTTGGGAAAG
EST: gi|30328071|gb|CD011333.1|CD011333
EST:     AGGAGAGATAGTTAAAGGAGTTTGCTCAAATGGTCTTGT                         GTGACTTGAAGCCTGGGGCTGATGTCAAAATCACAGGACCTGTTGGGAAA
genomic: AGGAGAGATAGTTAAAGGAGTTTGCTCAAAT-TTCTTGTgtaagtctct ... tttgtttcagGTGACTTGAAGCCTGGGGCTGATGTCAAAATCACAGGACCTGTTGGGAAA
EST: gi|351057238|gb|FQ450945.1|FQ450945
EST:     CACCAATGACCAAGGAGAGATAGTTAAAGGAGTTTGCTCAAATTTCTTGT                         GTGACTTGAAGCCTGGGGCTGATGTCAAAATCACAGGACCTGTTGGGAAAG
genomic: CACCAATGACCAAGGAGAGATAGTTAAAGGAGTTTGCTCAAATTTCTTGTgtaagtctct ... tttgtttcagGTGACTTGAAGCCTGGGGCTGATGTCAAAATCACAGGACCTGTTGGGAAAG
EST: gi|33404726|gb|CF210353.1|CF210353
EST:     CACCAATGACCAAGGAGAGATAGTTAAAGGAGTTTGCTCAAATTTCTTGT                         GTGACTTGAAGCCTGGGGCTGATGTCAAAATCACAGGACCTGTTGGGAAAG
genomic: CACCAATGACCAAGGAGAGATAGTTAAAGGAGTTTGCTCAAATTTCTTGTgtaagtctct ... tttgtttcagGTGACTTGAAGCCTGGGGCTGATGTCAAAATCACAGGACCTGTTGGGAAAG
EST: gi|351044758|gb|FQ449012.1|FQ449012
EST:     CACCAATGACCAAGGAGAGATAGTTAAAGGAGTTTGCTCAAATTTCTTGT                         GTGACTTGAAGCCTGGGGCTGATGTCAAAATCACAGGACCTGTTGGGAAAG
genomic: CACCAATGACCAAGGAGAGATAGTTAAAGGAGTTTGCTCAAATTTCTTGTgtaagtctct ... tttgtttcagGTGACTTGAAGCCTGGGGCTGATGTCAAAATCACAGGACCTGTTGGGAAAG
EST: gi|349816231|gb|FQ403727.1|FQ403727
EST:     CACCAATGACCAAGGAGAGATAGTTAAAGGAGTTTGCTCAAATTTCTTGT                         GTGACTTGAAGCCTGGGGCTGATGTCAAAATCACAGGACCTGTTGGGAAAG
genomic: CACCAATGACCAAGGAGAGATAGTTAAAGGAGTTTGCTCAAATTTCTTGTgtaagtctct ... tttgtttcagGTGACTTGAAGCCTGGGGCTGATGTCAAAATCACAGGACCTGTTGGGAAAG
EST: gi|351055701|gb|FQ452166.1|FQ452166
EST:     CACCAATGACCAAGGAGAGATAGTTAAAGGAGTTTGCTCAAATTTCTTGT                         GTGACTTGAAGCCTGGGGCTGATGTCAAAATCACAGGACCTGTTGGGAAAG
genomic: CACCAATGACCAAGGAGAGATAGTTAAAGGAGTTTGCTCAAATTTCTTGTgtaagtctct ... tttgtttcagGTGACTTGAAGCCTGGGGCTGATGTCAAAATCACAGGACCTGTTGGGAAAG
EST: gi|351035786|gb|FQ463631.1|FQ463631
EST:     CACCAATGACCGAGGAGAGATAGTTAAAGGAGTTTGCTCAAATTTCTTGT                         GTGACTTGAAGCCTGGGGCTGATGTCAAAATCACAGGACCTGTTGGGAAAG
genomic: CACCAATGACCAAGGAGAGATAGTTAAAGGAGTTTGCTCAAATTTCTTGTgtaagtctct ... tttgtttcagGTGACTTGAAGCCTGGGGCTGATGTCAAAATCACAGGACCTGTTGGGAAAG
EST: gi|349811497|gb|FQ409493.1|FQ409493
EST:     CACCAATGACCAAGGAGAGATAGTTAAAGGAGTTTGCTCAAATTTCTTGT                         GTGACTTGAAGCCTGGGGCTGATGTCAAAATCACAGGACTTGTTGGGAAAG
genomic: CACCAATGACCAAGGAGAGATAGTTAAAGGAGTTTGCTCAAATTTCTTGTgtaagtctct ... tttgtttcagGTGACTTGAAGCCTGGGGCTGATGTCAAAATCACAGGACCTGTTGGGAAAG
EST: gi|349814907|gb|FQ410130.1|FQ410130
EST:     CACCAATGACCAAGGAGAGATAGTTAAAGGAGTTTGCTCAAATTTCTTGT                         GTGACTTGAAGCCTGGGGCTGATGTCAAAATCACAGGACCTGTTGGGAAAG
genomic: CACCAATGACCAAGGAGAGATAGTTAAAGGAGTTTGCTCAAATTTCTTGTgtaagtctct ... tttgtttcagGTGACTTGAAGCCTGGGGCTGATGTCAAAATCACAGGACCTGTTGGGAAAG
EST: gi|351045587|gb|FQ440772.1|FQ440772
EST:     CACCGATGACCAAGGAGAGATAGTTAAAGGAGTTTGCTCAAATTTCTTGT                         GTGACTTGAAGCCTGGGGCTGATGTCAAAATCACAGGACCTGTTGGGAAAG
genomic: CACCAATGACCAAGGAGAGATAGTTAAAGGAGTTTGCTCAAATTTCTTGTgtaagtctct ... tttgtttcagGTGACTTGAAGCCTGGGGCTGATGTCAAAATCACAGGACCTGTTGGGAAAG
EST: gi|351053728|gb|FQ441494.1|FQ441494
EST:     CACCAATGACCAAGGAGAGATAGTTAAAGGAGTTTGCTCAAATTTCTTGT                         GTGACTTGAAGCCTGGGGCTGATGTCAAAATCACAGGACCTGTTGGGAAAG
genomic: CACCAATGACCAAGGAGAGATAGTTAAAGGAGTTTGCTCAAATTTCTTGTgtaagtctct ... tttgtttcagGTGACTTGAAGCCTGGGGCTGATGTCAAAATCACAGGACCTGTTGGGAAAG
EST: gi|351056890|gb|FQ443517.1|FQ443517
EST:     CACCAATGACCAAGGAGAGATAGTTAAAGGAGTTTGCTCAAATTTCTTGT                         GTGACTTGAAGCCTGGGGCTGATGTCAAAATCACAGGACCTGTTGGGAAAG
genomic: CACCAATGACCAAGGAGAGATAGTTAAAGGAGTTTGCTCAAATTTCTTGTgtaagtctct ... tttgtttcagGTGACTTGAAGCCTGGGGCTGATGTCAAAATCACAGGACCTGTTGGGAAAG
EST: gi|349825028|gb|FQ415575.1|FQ415575
EST:     CACCAATGACCAAGGAGAGATAGTTAAAGGAGTTTGCTCAAATTTCTTGT                         GTGACTTGAAGCCTGGGGCTGATGTCAAAATCACAGGACCTGTTGGGAAAG
genomic: CACCAATGACCAAGGAGAGATAGTTAAAGGAGTTTGCTCAAATTTCTTGTgtaagtctct ... tttgtttcagGTGACTTGAAGCCTGGGGCTGATGTCAAAATCACAGGACCTGTTGGGAAAG
EST: gi|351053267|gb|FQ459135.1|FQ459135
EST:     CACCAATGACCAAGGAGAGATAGTTAAAGGAGTTTGCTCAAATTTCTTGT                         GTGACTTGAAGCCTGGGGCTGATGTCAAAATCACAGGACCTGTTGGGAAAG
genomic: CACCAATGACCAAGGAGAGATAGTTAAAGGAGTTTGCTCAAATTTCTTGTgtaagtctct ... tttgtttcagGTGACTTGAAGCCTGGGGCTGATGTCAAAATCACAGGACCTGTTGGGAAAG
EST: gi|351025508|gb|FQ435201.1|FQ435201
EST:     CACCAATGACCAAGGAGAGATAGTTAAAGGAGTTTGCTCAAATTTCTTGT                         GTGACTTGAAGCCTGGGGCTGATGTCAAAATCACAGGACCTGTTGGGAAAG
genomic: CACCAATGACCAAGGAGAGATAGTTAAAGGAGTTTGCTCAAATTTCTTGTgtaagtctct ... tttgtttcagGTGACTTGAAGCCTGGGGCTGATGTCAAAATCACAGGACCTGTTGGGAAAG
EST: gi|30325352|gb|CD008614.1|CD008614
EST:     GACCAAGGAGAGATAGTTAAAGGAGTTTGCTCAAATTTCTTGT                         GTGACTTGAAGCCTGGGGCTGATGTCAAAATCACAGGACCTGTTGGGAAAG
genomic: GACCAAGGAGAGATAGTTAAAGGAGTTTGCTCAAATTTCTTGTgtaagtctct ... tttgtttcagGTGACTTGAAGCCTGGGGCTGATGTCAAAATCACAGGACCTGTTGGGAAAG
EST: gi|351044587|gb|FQ443118.1|FQ443118
EST:     CACCAATGACCAAGGAGAGATAGTTAAAGGAGTTTGCTCAAATTTCTTGT                         GTGACTTGAAGCCTGGGGCTGATGTCAAAATCACAGGACCTGTTGGGAAAG
genomic: CACCAATGACCAAGGAGAGATAGTTAAAGGAGTTTGCTCAAATTTCTTGTgtaagtctct ... tttgtttcagGTGACTTGAAGCCTGGGGCTGATGTCAAAATCACAGGACCTGTTGGGAAAG
EST: gi|110371343|gb|EC935294.1|EC935294
EST:     CACCAATGACCAAGGAGAGATAGTTAAAGGAGTTTGCTCAAATTTCTTGT                         GTGACTTGAAGCCTGGGGCTGATGTCAAAATCACAGGACCTGTTGGGAAAG
genomic: CACCAATGACCAAGGAGAGATAGTTAAAGGAGTTTGCTCAAATTTCTTGTgtaagtctct ... tttgtttcagGTGACTTGAAGCCTGGGGCTGATGTCAAAATCACAGGACCTGTTGGGAAAG
EST: gi|351045767|gb|FQ440952.1|FQ440952
EST:     CACCAATGACCAAGGAGAGGTAGTTAAAGGAGTTTGCTCAAATTTCTTGT                         GTGACTTGAAGCCTGGGGCTGATGTCAAAATCACAGGACCTGTTGGGAAAG
genomic: CACCAATGACCAAGGAGAGATAGTTAAAGGAGTTTGCTCAAATTTCTTGTgtaagtctct ... tttgtttcagGTGACTTGAAGCCTGGGGCTGATGTCAAAATCACAGGACCTGTTGGGAAAG
EST: gi|349829231|gb|FQ419763.1|FQ419763
EST:     CACCAATGACCAAGGAGAGATAGTTAAAGGAGTTTGCTCAAATTTCTTGT                         GTGACTTGAAGCCTGGGGCTGATGTCAAAATCACAGGACCTGTTGGGAAAG
genomic: CACCAATGACCAAGGAGAGATAGTTAAAGGAGTTTGCTCAAATTTCTTGTgtaagtctct ... tttgtttcagGTGACTTGAAGCCTGGGGCTGATGTCAAAATCACAGGACCTGTTGGGAAAG
EST: gi|349810724|gb|FQ402967.1|FQ402967
EST:     CACCAATGACCAAGGAGAGATAGTTAAAGGAGTTTGCTCAAATTTCTTGT                         GTGACTTGAAGCCTGGGGCTGATGTCAAAATCACAGGACCTGTTGGGAAAG
genomic: CACCAATGACCAAGGAGAGATAGTTAAAGGAGTTTGCTCAAATTTCTTGTgtaagtctct ... tttgtttcagGTGACTTGAAGCCTGGGGCTGATGTCAAAATCACAGGACCTGTTGGGAAAG
EST: gi|349812990|gb|FQ411230.1|FQ411230
EST:     CACCAATGACCAAGGAGAGATAGTTAAAGGAGTTTGCTCAAATTTCTTGT                         GTGACTTGAAGCCTGGGGCTGATGTCAAAATCACAGGACCTGTTGGGAAAG
genomic: CACCAATGACCAAGGAGAGATAGTTAAAGGAGTTTGCTCAAATTTCTTGTgtaagtctct ... tttgtttcagGTGACTTGAAGCCTGGGGCTGATGTCAAAATCACAGGACCTGTTGGGAAAG
EST: gi|110379774|gb|EC944993.1|EC944993
EST:     CACCAATGACCAAGGAGAGATAGTTAAAGGAGTTTGCTCAAATTTCTTGT                         GTGACTTGAAGCCTGGGGCTGATGTCAAAATCACAGGACCTGTTGGGAAAG
genomic: CACCAATGACCAAGGAGAGATAGTTAAAGGAGTTTGCTCAAATTTCTTGTgtaagtctct ... tttgtttcagGTGACTTGAAGCCTGGGGCTGATGTCAAAATCACAGGACCTGTTGGGAAAG
EST: gi|349821990|gb|FQ408319.1|FQ408319
EST:     CACCAATGACCAAGGAGAGATAGTTAAAGGAGTTTGCTCAAATTTCTTGT                         GTGACTTGAAGCCTGGGGCTGATGTCAAAATCACAGGACCTGTTGGGAAAG
genomic: CACCAATGACCAAGGAGAGATAGTTAAAGGAGTTTGCTCAAATTTCTTGTgtaagtctct ... tttgtttcagGTGACTTGAAGCCTGGGGCTGATGTCAAAATCACAGGACCTGTTGGGAAAG
EST: gi|349825115|gb|FQ415662.1|FQ415662
EST:     CACCAATGACCAAGGAGAGATAGTTAAAGGAGTTTGCTCAAATTTCTTGT                         GTGACTTGAAGCCTGGGGCTGATGTCAAAATCACAGGACCTGTTGGGAAAG
genomic: CACCAATGACCAAGGAGAGATAGTTAAAGGAGTTTGCTCAAATTTCTTGTgtaagtctct ... tttgtttcagGTGACTTGAAGCCTGGGGCTGATGTCAAAATCACAGGACCTGTTGGGAAAG
EST: gi|351031903|gb|FQ460160.1|FQ460160
EST:     CACCAATGACCAAGGAGAGGTAGTTAAAGGAGTTTGCTCAAATTTCTTGT                         GTGACTTGAAGCCTGGGGCTGATGTCAAAATCACAGGACCTGTTGGGAAAG
genomic: CACCAATGACCAAGGAGAGATAGTTAAAGGAGTTTGCTCAAATTTCTTGTgtaagtctct ... tttgtttcagGTGACTTGAAGCCTGGGGCTGATGTCAAAATCACAGGACCTGTTGGGAAAG
EST: gi|351040458|gb|FQ434591.1|FQ434591
EST:     CACCAATGACCAAGGAGAGATAGTTAAAGGAGTTTGCTCAAATTTCTTGT                         GTGACTTGAAGCCTGGGGCTGATGTCAAAATCACAGGACCTGTTGGGAAAG
genomic: CACCAATGACCAAGGAGAGATAGTTAAAGGAGTTTGCTCAAATTTCTTGTgtaagtctct ... tttgtttcagGTGACTTGAAGCCTGGGGCTGATGTCAAAATCACAGGACCTGTTGGGAAAG
EST: gi|351052706|gb|FQ453814.1|FQ453814
EST:     CACCAATGACCAAGGAGAGGTAGTTAAAGGAGTTTGCTCAAATTTCTTGT                         GTGACTTGAAGCCTGGGGCTGATGTCAAAATCACAGGACCTGTTGGGAAAG
genomic: CACCAATGACCAAGGAGAGATAGTTAAAGGAGTTTGCTCAAATTTCTTGTgtaagtctct ... tttgtttcagGTGACTTGAAGCCTGGGGCTGATGTCAAAATCACAGGACCTGTTGGGAAAG
EST: gi|349826752|gb|FQ418843.1|FQ418843
EST:     CACCAATGACCAAGGAGAGATAGTTAAAGGAGTTTGCTCAAATTTCTTGT                         GTGACTTGAAGCCTGGGGCTGATGTCAAAATCACAGGACCTGTTGGGAAAG
genomic: CACCAATGACCAAGGAGAGATAGTTAAAGGAGTTTGCTCAAATTTCTTGTgtaagtctct ... tttgtttcagGTGACTTGAAGCCTGGGGCTGATGTCAAAATCACAGGACCTGTTGGGAAAG
EST: gi|349817775|gb|FQ407764.1|FQ407764
EST:     CACCAATGACCAAGGAGAGATAGTTAAAGGAGTTTGCTCAAATTTCTTGT                         GTGACTTGAAGCCTGGGGCTGATGTCAAAATCACAGGACCTGTTGGGAAAG
genomic: CACCAATGACCAAGGAGAGATAGTTAAAGGAGTTTGCTCAAATTTCTTGTgtaagtctct ... tttgtttcagGTGACTTGAAGCCTGGGGCTGATGTCAAAATCACAGGACCTGTTGGGAAAG
EST: gi|352794268|gb|FQ479510.1|FQ479510
EST:     CACCAATGACCAAGGAGAGATAGTTAAAGGAGTTTGCTCAAATTTCTTGT                         GTGACTTGAAGCCTGGGGCTGATGTCAAAATCACAGGACCTGTTGGGAAAG
genomic: CACCAATGACCAAGGAGAGATAGTTAAAGGAGTTTGCTCAAATTTCTTGTgtaagtctct ... tttgtttcagGTGACTTGAAGCCTGGGGCTGATGTCAAAATCACAGGACCTGTTGGGAAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gagtttaggaaatgctttgattatcgtcctagcaactctgatccttttgtttcagGTGACTTGAAGCCTGGGGCTGATGTCAAAATCACAGGACCTGTTGGGAAAGAAATGCTTATGCCAAAAGATCCAAATGCCACTGTCATAATG
                                   ctctgat  putative branch site (score: 4)
                                         tccttttgtttc  CT-rich tract
               tttgattat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tttgtatagaatcagctctatcagcatcggtgctacgatggggccgagtttaggaaatgctttgattatcgtcctagcaactctgatccttttgtttcagGTGACTTGAAGCCTGGGGCTGATGTCAAAATCACAGGACCTGTTGGGAAAGAAATGCTTATGCCAAAAGATCCAAATGCCACTGTCATAATG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - cagctct
- - - - - - - - - - - - - - - - - - - -ggggccg
- - - - - - - - - - - - - - - - - - - - - - - - - -aggaaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caactct