Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgtctttctcatgatgatgtcctccttgaagaataaatctggattgataaagtgactaattagtgttaatgtatgtaaattagGTTAATGACACTGTAGGAACATTGGCCGGAGCAAGATACTGGGATGATGATGTAATGGTTGCTGTCATTTTAGGAACTGGAACCAATGCGTGCTATGTAG

Basic information

species Vitis vinifera
transcript Vv18s0001g14230.t01
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv18s0001g14230.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA17G37720.1 (Glycine max), 3'ss of exon 4
------gtacgtctttct-catgatgatgtcctccttgaagaataaatctggattgataaagtgacta------attagtgttaatgtatgtaaattagGTTAATGACACTGTAGGAACATTGGCCGGAGCAAGATACTGGGATGATGATGTAATGGTTGCTGTCATTTTAGGAACTGGAACCAATGCGTGCTATGTAG-
       |  ||  | |    ||   || |         | | ||| | |  |   ||| |||| | |      | ||  |  |||   |    | ||||| ||||| || || | ||| || || ||||||  |||||||||| |||||||  |||||||||||||||| || |||||||||||||| |||||||| | 
tttataattggttatacagtgtgccaatttatcaaaattaaactaagtttaaaccaatacagtggcgataaaaaaatatagcaaattccttcctaataggTGAATGATACCGTGGCAACGTTAGCTGGAGCAGAATACTGGGATAATGATGTCGTGGTTGCTGTCATTTTGGGTACTGGAACCAATGCTTGCTATGTTGA

upper sequence: Vv18s0001g14230.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA14G40440.1 (Glycine max), 3'ss of exon 4
-------gtacgtctttctcatgatgatgtcctccttgaa---gaataaatctggattgataaagtgactaattagtgttaatgtatgtaaat----tagGTTAATGACACTGTAGGAACATTGGCCGGAGCAAGATACTGGGATGATGATGTAATGGTTGCTGTCATTTTAGGAACTGGAACCAATGCGTGCTATGTAG
       ||   |  ||      |  |||| ||     ||    | | ||| |  |    || ||||      || | ||| |  |||   |     ||||| ||||| || || | ||| || || ||||||  |||||||||  |||||||  |||||||||||||||| || ||||||| |||||| |||||||| |
tagaatagtttctaattggttatacaatgtactatcaaaatcaaactcaatttaaaccattacagtgttggtgtaattttagtaaatgcccaccttatagGTGAATGATACCGTGGCAACGTTAGCTGGAGCAGAATACTGGGACAATGATGTCGTGGTTGCTGTCATTTTGGGTACTGGAAGCAATGCTTGCTATGTTG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aagaataaatctggattgataaagtgactaattagtgttaatgtatgtaaattagGTTAATGACACTGTAGGAACATTGGCCGGAGCAAGATACTGGGATGATGATGTAATGGTTGCTGTCATTTTAGGAACTGGAACCAATGCGTGCTATGTAG
                                     ttaatgtatgtaaatt  TA-rich tract