1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...acatttgcccattaatgttaaagaagtttactagatattagaaaataatagaacttaaactttttcttattaatttggtgaacttgttatgtcattgcagATGCGGACTTATGCAAGAAACGGTGAGAACCCTCCTGATGGTTTTATGTGCCCCCAGGGATGGAGTGTCCTTGTCAGATACTATGAGAGTTTGCAAGCAG
species | Vitis vinifera |
transcript | Vv18s0001g14010.t01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TTTTTGATCCTTCACGTGCTAAGGATTTTCTCTTCATTTCAGGAACCAAG ATGCGGACTTATGCAAGAAACGGTGAGAACCCTCCTGATGGTTTTATGTGCEST: gi|37187606|gb|CF606959.1|CF606959
genomic: TTTTTGATCCTTCACGTGCTAAGGATTTTCTCTTCATTTCAGGAACCAAGgtagcaacag ... gtcattgcagATGCGGACTTATGCAAGAAACGGTGAGAACCCTCCTGATGGTTTTATGTGC
EST: TTTTCTCTTCATTTCAGGAACCAAG ATGCGGACTTATGCAAGAAACGGTGAGAACCCTCCTGATGGTTTTATGTGCEST: gi|26264548|gb|CA815611.1|CA815611
genomic: TTTTCTCTTCATTTCAGGAACCAAGgtagcaacag ... gtcattgcagATGCGGACTTATGCAAGAAACGGTGAGAACCCTCCTGATGGTTTTATGTGC
EST: CTTTTGATCCTTCACGTGCTAAGGATTTTCTCTTCATTTCAGGAACCAAG ATGCGGACTTATGCAAGAAACGGTGAGAACCCTCCTGATGGTTTTATGTGC
genomic: TTTTTGATCCTTCACGTGCTAAGGATTTTCTCTTCATTTCAGGAACCAAGgtagcaacag ... gtcattgcagATGCGGACTTATGCAAGAAACGGTGAGAACCCTCCTGATGGTTTTATGTGC
taatagaacttaaactttttcttattaatttggtgaacttgttatgtcattgcagATGCGGACTTATGCAAGAAACGGTGAGAACCCTCCTGATGGTTTTATGTGCCCCCAGGGATGGAGTGTCCTTGTCAGATACTATGAGAGTTTGCAAGCAG
tattaat putative branch site (score: 2)
aacttaaactttttct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acatttgcccattaatgttaaagaagtttactagatattagaaaataatagaacttaaactttttcttattaatttggtgaacttgttatgtcattgcagATGCGGACTTATGCAAGAAACGGTGAGAACCCTCCTGATGGTTTTATGTGCCCCCAGGGATGGAGTGTCCTTGTCAGATACTATGAGAGTTTGCAAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - ttgccca
- - - - - - - - - taaagaa
- - - - - - - - - - - - - - - - - - - - -aaaataa
- - - - - - - - - - - - - - - - - - - - - - - - - -aacttaaa