1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...ggttcttatttcaatcccattattttatcaactgattctctgtggttgattgtccatcaacacactgacatctaatatcatagcttatttgttttcacagATATTCTATATGATTCATGGTCCCCAGCCATGACAGTTAGTTCAATCTGTATCAGCATACTCTCCATGTTATCGAGCTCAACTGTGAAG
species | Vitis vinifera |
transcript | Vv18s0001g13180.t01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GCCAGCTCCTCTGCATCCTCACATATACAGCAATGGGCATATCTGTTTAG ATATTCTATATGATTCATGGTCCCCAGCCATGACAGTCAGTTCAATCTGTAEST: gi|71874807|gb|DT023862.1|DT023862
genomic: GCCAGCTCCTCTGCATCCTCACATATACAGCAATGGGCATATCTGTTTAGgtaattccat ... gttttcacagATATTCTATATGATTCATGGTCCCCAGCCATGACAGTTAGTTCAATCTGTA
EST: GCCAGCTCCTCTGCATCCTCACATATACAGCAATGGGCATATCTGTTTAG ATATTCTATATGATTCATGGTCCCCAGCCATGACAGTTAGTTCAATCTGTAEST: gi|32267803|gb|CD716962.1|CD716962
genomic: GCCAGCTCCTCTGCATCCTCACATATACAGCAATGGGCATATCTGTTTAGgtaattccat ... gttttcacagATATTCTATATGATTCATGGTCCCCAGCCATGACAGTTAGTTCAATCTGTA
EST: GCCAGCTCCTCTGCATCCTCACATATACAGCAATGGGCATATCTGTTTAG ATATTCTATATGATTCATGGTCCCCAGCCATGACAGTCAGTTCAATCTGTA
genomic: GCCAGCTCCTCTGCATCCTCACATATACAGCAATGGGCATATCTGTTTAGgtaattccat ... gttttcacagATATTCTATATGATTCATGGTCCCCAGCCATGACAGTTAGTTCAATCTGTA
ttgattgtccatcaacacactgacatctaatatcatagcttatttgttttcacagATATTCTATATGATTCATGGTCCCCAGCCATGACAGTTAGTTCAATCTGTATCAGCATACTCTCCATGTTATCGAGCTCAACTGTGAAG
tttgttttc CT-rich tract
ttatttgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggttcttatttcaatcccattattttatcaactgattctctgtggttgattgtccatcaacacactgacatctaatatcatagcttatttgttttcacagATATTCTATATGATTCATGGTCCCCAGCCATGACAGTTAGTTCAATCTGTATCAGCATACTCTCCATGTTATCGAGCTCAACTGTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - -caatccc
- - - - - - - - - - - - - - - -ctgattc
- - - - - - - - - - - - - - - - - - - - -gtggttg
- - - - - - - - - - - - - - - - - - - - - - - - - - -ccatcaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cacactg