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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaccattagaagccattctgagttttattatgtctgttagttctcattttttttgtcacttatcgttattttttttgctttctcagTTGGCTTGTACTGGCTCATGTCCTGGTTCATCAGATGAAATCTCTCCCATATACTCATTATGGGCTACATTTATAGGCCTCTATATTGCCAACTATGTGG

Basic information

species Vitis vinifera
transcript Vv18s0001g11060.t01
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv18s0001g11060.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: LOC_Os07g01540.1 (Oryza sativa), 3'ss of exon 4
gtaccattagaagccattc--tgagttttattatgtctgtt---agttctcattttttttgtcacttatcgttattttttttgctttctcagTTGGCTTGTACTGGCTCATGTCCTGGTTCATCAGATGAAATCTCTCCCATATACTCATTATGGGCTACATTTATAGGCCTCTATATTGCCAACTATGTGG
|||||  | |   | ||||    | | ||  | |   ||||   || |  || | |   ||| ||   || ||  |  | ||  | || ||| | | ||| | ||| || ||| ||||  | ||||||||||| |||||  | |||||||| |||||||||||| | ||||| |||||||| |||| ||| |
gtaccgctggcctcgattcatctattctttcttttcatgtttccagctgacaatatccatgttacacttctttgatcatgttattctc-cagCTAGTTTGCAGTGGATCCTGTGCTGGCCCTTCAGATGAAATATCTCCTCTGTACTCATTGTGGGCTACATTTGTTGGCCTTTATATTGCTAACTTTGTTG

upper sequence: Vv18s0001g11060.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GRMZM2G135839_T01 (Zea mays), 3'ss of exon 4
gtaccattagaagccattctgagt-tttattatgtctgttagttctcattttttttgtcacttatcgttattttttttg--------ctttctcagTTGGCTTGTACTGGCTCATGTCCTGGTTCATCAGATGAAATCTCTCCCATATACTCATTATGGGCTACATTTATAGGCCTCTATATTGCCAACTATGTGG
||||     |   |   | |     | |||||| |||  | |  ||   ||    || ||   ||  |    || ||||         ||   ||||| | ||| |  || || ||| ||||  |||| ||||||||||||||  | ||||||||||||||||||||| | ||||||||||| || |||| ||| |
gtactgcctgcttctcctttattcatctattatttctagtcgcactttcttaaggtgacatccatgttgcacttctttgatcatgtttttctccagTTAGTTTGCAGCGGATCCTGTGCTGGCCCATCGGATGAAATCTCTCCTTTGTACTCATTATGGGCTACATTTGTTGGCCTCTATATCGCTAACTTTGTTG

upper sequence: Vv18s0001g11060.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA17G36310.1 (Glycine max), 3'ss of exon 3
-------------------------gtaccattagaagcca-ttctgagttttattatgtctgttagttctcattttttttgtcacttatcgttat--tttttttgctttctcagTTGGCTTGTACTGGCTCATGTCCTGGTTCATCAGATGAAATCTCTCCCATATACTCATTATGGGCTACATTTATAGGCCTCTATATTGCCAACTATGTGG
                          |    |  | || ||  | |     ||  ||| | |||   || |  || |||   |   ||   |  |   || ||||  | | | || | ||||| | ||| |||||||||||||||||||||||||| |||||||| |||||| | |||||||||||||| || || || ||||| || |||||||
gtacttaatataatgatataattatttgatttatgcagtcagctgtcgtaattcatatctatgtccattttggttctttacatggtttgatgccaaaattatttttatgtattagATAGCTTGCAATGGATCATGTCCTGGTTCATCAGATGAAATTTCTCCCATCTACTCACTTTGGGCTACATTTATTGGGCTTTACATTGCAAATTATGTGG

upper sequence: Vv18s0001g11060.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA14G08860.1 (Glycine max), 3'ss of exon 3
--------------------------gtaccattagaagccatt-ctgagttttat-tatgtctgttagttctcattttttttgtcacttatcgttattttttttgctttctcagTTGGCTTGTACTGGCTCATGTCCTGGTTCATCAGATGAAATCTCTCCCATATACTCATTATGGGCTACATTTATAGGCCTCTATATTGCCAACTATGTGG
                            |    || |  | | |  ||   || || ||| | |||   ||||  || ||||  |   ||   |  |   || ||  | | | || | ||||| | ||| |||||||||||||||||||||||||| |||||||| |||||| | |||||||||||||| || || || ||||| || |||||||
gtacttaatataatgatataattatttgatttatacagtctactgttgtaattcatatatctatgtccattctggttcttttcatggtttgatgccaaaattatttttgtattagATAGCTTGCAATGGATCATGTCCTGGTTCATCAGATGAAATTTCTCCCATTTACTCACTCTGGGCTACATTTATTGGGCTTTACATTGCAAATTATGTGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtctgttagttctcattttttttgtcacttatcgttattttttttgctttctcagTTGGCTTGTACTGGCTCATGTCCTGGTTCATCAGATGAAATCTCTCCCATATACTCATTATGGGCTACATTTATAGGCCTCTATATTGCCAACTATGTGG
                               tcgttattttttttgc  CT-rich tract
                            ttatcgttattttttt  TA-rich tract