1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...tatttatatctgaaaataatttttgttgttgattgtaatcatctgggtgtataactctgtattggtcttcgtatatattaattctggaaaatgtgtgcagTTGCAAGAGGCAAGAAGTGGAAGAATGACTGTGTCACTAAG
species | Vitis vinifera |
transcript | Vv18s0001g09710.t01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AGACAAAAACACAAAGCCAGTGCGTGCCTCACAGATTAAGCCAAAAAATT TTGCAAGAGGCAAGAAGTGGAAGAATGACTGTGTCACTAAGEST: gi|71880779|gb|DT029834.1|DT029834
genomic: AGACAAAAACACAAAGCCAGTGCGTGCCTCACAGATTAAGCCAAAAAATTgtactgctca ... atgtgtgcagTTGCAAGAGGCAAGAAGTGGAAGAATGACTGTGTCACTAAG
EST: AGACAAAAACACAAAGCCAGTGCGTGCCTCACAGATTAAGCCAAAAAATT TTGCAAGAGGCAAGAAGTGGAAGAATGACTGTGTCACTAAGEST: gi|71859464|gb|DT008519.1|DT008519
genomic: AGACAAAAACACAAAGCCAGTGCGTGCCTCACAGATTAAGCCAAAAAATTgtactgctca ... atgtgtgcagTTGCAAGAGGCAAGAAGTGGAAGAATGACTGTGTCACTAAG
EST: AGACAAAAACACAAAGCCAGTGCGTGCCTCACAGATTAAGCCAAAAAATT TTGCAAGAGGCAAGAAGTGGAAGAATGACTGTGTCACTAAGEST: gi|27584092|gb|CB006787.1|CB006787
genomic: AGACAAAAACACAAAGCCAGTGCGTGCCTCACAGATTAAGCCAAAAAATTgtactgctca ... atgtgtgcagTTGCAAGAGGCAAGAAGTGGAAGAATGACTGTGTCACTAAG
EST: AGACAAAAACACAAAGCCAGTGCGTGCCTCACAGATTAGGCCAAAAAATT TTGCAAGAGGCAAGAAGTGGAAGAATGACTGTGTCACTAAGEST: gi|30303537|gb|CB980331.1|CB980331
genomic: AGACAAAAACACAAAGCCAGTGCGTGCCTCACAGATTAAGCCAAAAAATTgtactgctca ... atgtgtgcagTTGCAAGAGGCAAGAAGTGGAAGAATGACTGTGTCACTAAG
EST: AGACAAAAACACAAAGCCAGTGCGTGCCTCACAGATTAAGCCAAAAAATT TTGCAAGAGGCAAGAAGTGGAAGAATGACTGTGTCACTAAGEST: gi|71880624|gb|DT029679.1|DT029679
genomic: AGACAAAAACACAAAGCCAGTGCGTGCCTCACAGATTAAGCCAAAAAATTgtactgctca ... atgtgtgcagTTGCAAGAGGCAAGAAGTGGAAGAATGACTGTGTCACTAAG
EST: AGACAAAAACACAAAGCCAGTGCGTGCCTCACAGATTAAGCCAAAAAATT TTGCAAGAGGCAAGAAGTGGAAGAATGACTGTGTCACTAAGEST: gi|71877948|gb|DT027003.1|DT027003
genomic: AGACAAAAACACAAAGCCAGTGCGTGCCTCACAGATTAAGCCAAAAAATTgtactgctca ... atgtgtgcagTTGCAAGAGGCAAGAAGTGGAAGAATGACTGTGTCACTAAG
EST: AGACAAAAACACAAAGCCAGTGCGTGCCTCACAGATTAAGCCAAAAAATT TTGCAAGAGGCAAGAAGTGGAAGAATGACTGTGTCACTAAGEST: gi|71879457|gb|DT028512.1|DT028512
genomic: AGACAAAAACACAAAGCCAGTGCGTGCCTCACAGATTAAGCCAAAAAATTgtactgctca ... atgtgtgcagTTGCAAGAGGCAAGAAGTGGAAGAATGACTGTGTCACTAAG
EST: AGACAAAAACACAAAGCCAGTGCGTGCCTCACAGATTAAGCCAAAAAATT TTGCAAGAGGCAAGAAGTGGAAGAATGACTGTGTCACTAAGEST: gi|71878762|gb|DT027817.1|DT027817
genomic: AGACAAAAACACAAAGCCAGTGCGTGCCTCACAGATTAAGCCAAAAAATTgtactgctca ... atgtgtgcagTTGCAAGAGGCAAGAAGTGGAAGAATGACTGTGTCACTAAG
EST: AGACAAAAACACAAAGCCAGTGCGTGCCTCACAGATTAAGCCAAAAAATT TTGCAAGAGGCAAGAAGTGGAAGAATGACTGTGTCACTAAG
genomic: AGACAAAAACACAAAGCCAGTGCGTGCCTCACAGATTAAGCCAAAAAATTgtactgctca ... atgtgtgcagTTGCAAGAGGCAAGAAGTGGAAGAATGACTGTGTCACTAAG
ggtgtataactctgtattggtcttcgtatatattaattctggaaaatgtgtgcagTTGCAAGAGGCAAGAAGTGGAAGAATGACTGTGTCACTAAG
tattaat putative branch site (score: 2)
tatatattaattctgg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tatttatatctgaaaataatttttgttgttgattgtaatcatctgggtgtataactctgtattggtcttcgtatatattaattctggaaaatgtgtgcagTTGCAAGAGGCAAGAAGTGGAAGAATGACTGTGTCACTAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - aaaataa
- - - - - - - - - - - - - - - - - - - - - -tgggtgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - ctctgta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - attctgg