1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...tccatcctctgggcttgtagtttgtgtaaagttatcatcactttgaattttattagttttaagcagaatcatatgctgaaaaacttcttcccaatttcagGTGGCAAAAGAGAGTGCTGATGTCATAATTATGGATGATAACTTCTCCACTATTGTGACTGTGGGCAAATGGGGACGCTCAATTTATATTAACATTCAGA
species | Vitis vinifera |
transcript | Vv18s0001g09150.t01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CACTTCATGAAGCAGACATTGGGCTTGCAATGGGCATTGCTGGAACAGAG GTGGCAAAAGAGAGTGCTGATGTCATAATTATGGATGATAACTTCTCCACTEST: gi|27580854|gb|CB003549.1|CB003549
genomic: CACTTCATGAAGCAGACATTGGGCTTGCAATGGGCATTGCTGGAACAGAGgtgatacata ... ccaatttcagGTGGCAAAAGAGAGTGCTGATGTCATAATTATGGATGATAACTTCTCCACT
EST: CACTTCATGAAGCAGACATTGGGCTTGCAATGGGCATTGCTGGAACAGAG GTGGCAAAAGAGAGTGCTGATGTCATAATTATGGATGATAACTTCTCCACTEST: gi|110689058|gb|EE064960.1|EE064960
genomic: CACTTCATGAAGCAGACATTGGGCTTGCAATGGGCATTGCTGGAACAGAGgtgatacata ... ccaatttcagGTGGCAAAAGAGAGTGCTGATGTCATAATTATGGATGATAACTTCTCCACT
EST: CACTTCATGAAGCAGACATTGGGCTTGCAATGGGCATTGCTGGAACAGAG GTGGCAAAAGAGAGTGCTGATGTCATAATTATGGATGATAACTTCTCCACT
genomic: CACTTCATGAAGCAGACATTGGGCTTGCAATGGGCATTGCTGGAACAGAGgtgatacata ... ccaatttcagGTGGCAAAAGAGAGTGCTGATGTCATAATTATGGATGATAACTTCTCCACT
aattttattagttttaagcagaatcatatgctgaaaaacttcttcccaatttcagGTGGCAAAAGAGAGTGCTGATGTCATAATTATGGATGATAACTTCTCCACTATTGTGACTGTGGGCAAATGGGGACGCTCAATTTATATTAACATTCAGA
cttcttcccaatttc CT-rich tract
tattagttttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tccatcctctgggcttgtagtttgtgtaaagttatcatcactttgaattttattagttttaagcagaatcatatgctgaaaaacttcttcccaatttcagGTGGCAAAAGAGAGTGCTGATGTCATAATTATGGATGATAACTTCTCCACTATTGTGACTGTGGGCAAATGGGGACGCTCAATTTATATTAACATTCAGA
-ccatcct
- - - - - gggcttg
- - - - - - - - - - - - - - - - - -catcact
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aagcaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catatgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgaaaaa