Sequence
atgc intronic sequence ATGC exonic sequencegtaagtaataagtttttacttatcttgtctatttggaggctatgaagaggatgcaatgtaaatgaatttaatgttattttcctgtgattttctgtcaattggttgccttgaaataggctctgagtcataatttttttctcttttttttttctttgtttcttttaaagATCTGTGATGCAGTTGCTGTTGCAAAGATTTTGAATGCAACCCTTGTGATCCCTCACCTTGAAGTGAATCCTGTTTGGCAAGATTCAAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv18s0001g07490.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA04G10040.1 (Glycine max), 3'ss of exon 4
----gtaagt-aataagtttttacttatcttgtctatttggaggctatgaagaggatgcaatgtaaatgaatttaatgttattttcctgtgattttctgtcaattggttgccttgaaataggctctgagtcataatttttttctcttttttttttctttgtttcttttaaagATCTGTGATGCAGTTGCTGTTGCAAAGATTTTGAATGCAACCCTTGTGATCCCTCACCTTGAAGTGAATCCTGTTTGGCAAGATTCAAG
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gtaagtgaatgaatgagattgtgttgaaagggtataatttgat----cgaagaggtaaagtggaaaaaaaatgtagtgtt-ttatcatttatctcattgacatttgcct--caaaagtcaaaacttgatcgcttgtctaatactgttcttcctcttttt-tctctttaaaagATATGTGATGCTGTTGCTGTTGCTAAGATTTTGAATGCGACGTTGGTGCTCCCACATTTTGAAGTGAATCCTGTCTGGCAAGATTCAAG
upper sequence: Vv18s0001g07490.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA06G10040.1 (Glycine max), 3'ss of exon 4
----gtaagta-ataagtttttactta-----tcttgtctatttggaggctatg-aagaggatgcaatgtaaatgaatttaatgttattttcctgtgattttctgtcaattggttgccttgaaataggctctgagtcataatttttttctcttttttttttctttgtttcttttaaagATCTGTGATGCAGTTGCTGTTGCAAAGATTTTGAATGCAACCCTTGTGATCCCTCACCTTGAAGTGAATCCTGTTTGGCAAGATTCAAG
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gtatgtgaatggatgagattgtgttgaaagggtataatatgatcagagataaagtgaaaaaaagaaaaaaaaaagaagatagtgtt-ttatcatgtatctcattggcatttacct---caaaagtcaaaacttgatcacttgtctaatatcattctccttccttt-tctctttaaaagGTATGTGATGCTGTTGCTGTTGCTAAGATTTTGAATGCGACGCTGGTGCTCCCACATTTTGAAGTGAACCCTGTGTGGCAAGATTCAAG
upper sequence: Vv18s0001g07490.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: PP1S215_43V6.1 (Physcomitrella patens), 3'ss of exon 4
gtaagtaataagtttttacttatcttgtctatttggaggctatgaagaggatgcaatgtaaatgaatttaatgttattttcctgtgattttctgtcaattggttgccttgaaataggctctgagtcataatttttttctcttttttttttctttgtttcttttaaagATCTGTGATGCAGTTGCTGTTGCAAAGATTTTGAATGCAACCCTTGTGATCCCTCACCTTGAAGTGAATCCTGTTTGGCAAGATTCAAG
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------------------gtcagacttccttctaacagattttct------tggattttaa---aacttgctgtttgtctcgttggcaatgctattgat-gatt-------attagatgccattttattgtatgtgttggtcaactcattcgt-ataatcttggcagATTTGTGATGCGGTTGCTGTTGCAAAAATTCTGAATGCAACTCTTGTTCTTCCTCATTTCGATGTTAATCCAGTTTGGAAAGACTCCAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ataggctctgagtcataatttttttctcttttttttttctttgtttcttttaaagATCTGTGATGCAGTTGCTGTTGCAAAGATTTTGAATGCAACCCTTGTGATCCCTCACCTTGAAGTGAATCCTGTTTGGCAAGATTCAAG
tcataatttttttctc CT-rich tract
ataatttttttctctt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaagtaataagtttttacttatcttgtctatttggaggctatgaagaggatgcaatgtaaatgaatttaatgttattttcctgtgattttctgtcaattggttgccttgaaataggctctgagtcataatttttttctcttttttttttctttgtttcttttaaagATCTGTGATGCAGTTGCTGTTGCAAAGATTTTGAATGCAACCCTTGTGATCCCTCACCTTGAAGTGAATCCTGTTTGGCAAGATTCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA