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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgggtttttggtggtatattagtgttggtgcactgaccaccattccttcaagtttaagatggatcacggccagttagaagcatgttttgctaggaccatgttttgttgccttgtcatagatgatggatgaaaactgttctagttttgcttaagcagGAACCCCTTGCTTTCGAGGATATGGTAGGCGTAATGGAGAGAGGAGGAGGAAGGCTGTACGTGGGTGCATTGTCAGCCAGGACCTTTCTGTTCTGAACTT

Basic information

species Vitis vinifera
transcript Vv18s0001g06290.t01
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv18s0001g06290.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: LOC_Os07g42950.1 (Oryza sativa), 3'ss of exon 4
gtgggtttttggtggtatattagtgttggtgcactgaccaccattccttcaagtttaagatggatcacggccagttagaagcatgttttgctaggaccatgttttgttgccttgtcatagatgatggatgaaaactgttctagttttgcttaagcagGAACCCCTTGCTTTCGAGGATATGGTAGGCGTAATGGAGAGAGGAGGAGGAAGGCTGTACGTGGGTGCATTGTCAGCCAGGACCTTTCTGTTCTGAACTT
                                                                         || | |||  | | || |||  |     ||| |     |  |      || |      | | | |  || || |      ||||| || |||||||| || || ||||| |||||| |||| ||| | ||||||||| |||| ||||| ||||| |||||||||||||| |||||| | |||||
-------------------------------------------------------------------------gtaaaaaggctctatttctattattgactttcggatattcat-gcccttgctctgaccatattatgttacttgtat---ggcagGCACACCTTGCTTCCGTGGGTATGGCAGGCGTGATGGTGAGCGCAGGAGGAAGTCTGTCCGTGGTTGCATCGTCAGCCAGGACCTATCTGTTATTAACTT

upper sequence: Vv18s0001g06290.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: LOC_Os03g27260.1 (Oryza sativa), 3'ss of exon 4
gtgggtttttggtggtatattagtgttggtgcactgaccaccattccttcaagtttaagatggatcacggccagtta-gaagcatgttttgctaggaccatgttttgtt--gccttgtca-tagatgatggatgaaaactgttctagttttgcttaagcagGAACCCCTTGCTTTCGAGGATATGGTAGGCGTAATGGAGAGAGGAGGAGGAAGGCTGTACGTGGGTGCATTGTCAGCCAGGACCTTTCTGTTCTGAACTT
                                                                     |    ||| || || |   ||   | |   ||||||  ||  || |||     || || |  |     | ||||| | ||||       |||| ||||| ||||| || |||||||| |||||| |||| ||| | || |||||| | || ||||| |||||||||||||| || || |||||| | |||||
------------------------------------------------------------------gtagatgtttaagatgcttacatttgaatggttatgtttcattttgctttgctggcaggtgttctaatgtgaatgttccatttttatactgacagGTACCCCCTGCTTCCGTGGATATGGCAGGCGTGATGGTGAGCGCAGAAGGAAGTCAGTCCGTGGTTGCATTGTCAGCCAAGATCTCTCTGTTATCAACTT

upper sequence: Vv18s0001g06290.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GRMZM5G851698_T01 (Zea mays), 3'ss of exon 4
gtgggtttttggtggtatattagtgttggtgcactgaccaccattccttcaagtttaagatggatcacggccagttagaagcatgttttgctaggaccatgttttgttgccttgtcatagatgatggatgaaaactgttctagttttgcttaagcagGAACCCCTTGCTTTCGAGGATATGGTAGGCGTAATGGAGAGAGGAGGAGGAAGGCTGTACGTGGGTGCATTGTCAGCCAGGACCTTTCTGTTCTGAACTT
                                           |  ||  |  ||| | ||| ||   |         | |||     ||||    |  |  |     || |  |  |    |  ||| |||  |||| |  | ||   ||  |    ||  |||  || |     |  |||||   || |     ||| | |   ||| | | | | ||| |  | || ||   || | |      |   |     
-------------------------------------------tatctgaacatttgatatgaattgtgt--------aggcactccctgcttccgcggttatggcaggcgtaatggtgagcgcaggaggaagtctgtccgtggttgtattGTGAGCCAAGACCTATCTGTTATCAACTTGGTAATTGTTA-----AGAAGGGTGAGAACGATCTGCCTGGTTTAACTGACACTGAGAAGCCAAGGATGAGGGGTC-

upper sequence: Vv18s0001g06290.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GRMZM2G054136_T06 (Zea mays), 3'ss of exon 3
gtgggtttttggtggtatattagtgttggtgcactgaccaccattccttcaagttta-agatggatcacggccagttagaagca-tgttttgctaggaccatgttttgttgccttgtcatagatgatggatgaaaactgttctagttttgcttaagcagGAACCCCTTGCTTTCGAGGATATGGTAGGCGTAATGGAGAGAGGAGGAGGAAGGCTGTACGTGGGTGCATTGTCAGCCAGGACCTTTCTGTTCTGAACTT
                                               |||   |  | ||  | ||   | |    ||    || |||  |   |  ||||| ||||  |  ||  |  |      |   |||| | |       | |   ||  | ||| || || ||||| || || ||||| ||||||||||| ||| | ||||||||| |||| ||||| ||||| || ||||| ||||| |||||| | |||||
-----------------------------------------------ttctgctccataggggtatagagacttcctatgtccagtgtactctcaacaccatcttttact--ctgattct------tatctgaacatt----cgatatcaattctgtagGCACTCCCTGCTTCCGTGGTTATGGCAGGCGTAATGGTGAGCGCAGGAGGAAGTCTGTCCGTGGTTGCATCGTGAGCCAAGACCTATCTGTTATCAACTT

upper sequence: Vv18s0001g06290.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GRMZM2G054136_T01 (Zea mays), 3'ss of exon 4
gtgggtttttggtggtatattagtgttggtgcactgaccaccattccttcaagtttaagatggatcacggccagttagaagca-tgttttgctaggaccatgttttgttgccttgtcatagatgatggatgaaaactgttctagttttgcttaagcagGAACCCCTTGCTTTCGAGGATATGGTAGGCGTAATGGAGAGAGGAGGAGGAAGGCTGTACGTGGGTGCATTGTCAGCCAGGACCTTTCTGTTCTGAACTT
                                                             | ||   | |    ||    || |||  |   |  ||||| ||||  |  ||  |  |      |   |||| | |       | |   ||  | ||| || || ||||| || || ||||| ||||||||||| ||| | ||||||||| |||| ||||| ||||| || ||||| ||||| |||||| | |||||
-------------------------------------------------------------gtatagagacttcctatgtccagtgtactctcaacaccatcttttact--ctgattct------tatctgaacatt----cgatatcaattctgtagGCACTCCCTGCTTCCGTGGTTATGGCAGGCGTAATGGTGAGCGCAGGAGGAAGTCTGTCCGTGGTTGCATCGTGAGCCAAGACCTATCTGTTATCAACTT

upper sequence: Vv18s0001g06290.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GRMZM5G851698_T02 (Zea mays), 3'ss of exon 4
gtgggtttttggtggtatattagtgttggtgcactgaccaccattccttcaagtttaagatggatcacggccagttagaagcatgttttgctaggaccatgttttgttgccttgtcatagatgatggatgaaaactgttctagttttgcttaagcagGAACCCCTTGCTTTCGAGGATATGGTAGGCGTAATGGAGAGAGGAGGAGGAAGGCTGTACGTGGGTGCATTGTCAGCCAGGACCTTTCTGTTCTGAACTT
                                                              |   |  | | ||        |||  |   |  |||   | || || |||     | | |  |   |||| | |    |  | |   ||  | ||| || || ||||| || || ||||| ||||||||||| ||| | ||||||||| |||| ||||| || ||||| ||||| ||||| |||||| | |||||
--------------------------------------------------------------gtatatagactgtatctccattgtactctcaacaccccctctt-ttacct----gtggttcttatctgaacatt----tgatatgaattgtgtagGCACTCCCTGCTTCCGCGGTTATGGCAGGCGTAATGGTGAGCGCAGGAGGAAGTCTGTCCGTGGTTGTATTGTGAGCCAAGACCTATCTGTTATCAACTT

upper sequence: Vv18s0001g06290.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GRMZM2G054136_T02 (Zea mays), 3'ss of exon 3
gtgggtttttggtggtatattagtgttggtgcactgaccaccattccttcaagtttaagatggatcacggccagttagaagcatgttttgctaggaccatgttttgttgccttgtcatagatgatggatgaaaactgttctagttttgcttaagcagGAACCCCTTGCTTTCGAGGATATGGTAGGCGTAATGGAGAGAGGAGGAGGAAGGCTGTACGTGGGTGCATTGTCAGCCAGGACCTTTCTGTTCTGAACTT
                                                           || ||  ||  ||  ||   ||  |  | |   || ||||| ||||  |  ||  |  |      |   |||| | |       | |   ||  | ||| || || ||||| || || ||||| ||||||||||| ||| | ||||||||| |||| ||||| ||||| || ||||| ||||| |||||| | |||||
---------------------------------------------------------gtatagag-acttcctatttacagtgtactct--cagcaccatcttttact--ctgattct------tatctgaacatt----cgatatcaattctgtagGGACTCCCTGCTTCCGTGGTTATGGCAGGCGTAATGGTGAGCGCAGGAGGAAGTCTGTCCGTGGTTGCATCGTGAGCCAAGACCTATCTGTTATCAACTT

upper sequence: Vv18s0001g06290.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA08G45770.1 (Glycine max), 3'ss of exon 4
gtgggtttttggtggtatattagtgttggtgcactgaccaccattccttcaagtttaagatggatcacggccagttagaagcatgttttgctaggaccatgttttgttgccttgtcatagatgatggatgaaaactgttctagtt-ttgcttaagcagGAACCCCTTGCTTTCGAGGATATGGTAGGCGTAATGGAGAGAGGAGGAGGAAGGCTGTACGTGGGTGCATTGTCAGCCAGGACCTTTCTGTTCTGAACTT
                                                           ||  ||       |||   | |||| | ||| ||  | || || |       || |  |   |      | |      || || || || ||| | ||||||| |||||||| || |||||||| ||||||||||||||| | ||||| ||| |||| |||||||||||||||||||  ||||| |||||| |||||||
---------------------------------------------------------ttattaatttttaatagtgtaatgcatttgttgttat-atcaggtgtctacattttcttttgtctacaaactaattttctttttatttgttacttgaacagGAACTCCTTGCTTCCGTGGATATGGAAGGCGTAATGGAGAGCGTAGGAGAAAGTCTGTTCGTGGGTGCATTGTCAGCCCAGACCTCTCTGTTTTGAACTT

upper sequence: Vv18s0001g06290.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA18G26190.1 (Glycine max), 3'ss of exon 3
gtgggtttttggtggtatattagtgttggtgcactgaccaccattccttcaagtttaagatggatcacggccagttagaagcatgttttgctaggaccatgttttgttgccttgtcatagatgatggatgaaaactgttctagttt--tgcttaagcagGAACCCCTTGCTTTCGAGGATATGGTAGGCGTAATGGAGAGAGGAGGAGGAAGGCTGTACGTGGGTGCATTGTCAGCCAGGACCTTTCTGTTCTGAACTT
                                                            |   |||        ||    ||||  ||  | | | || || |   ||| ||  | | |   |   |  ||   | || |  |||  | ||| | ||||||| |||||||| || |||||||| ||||||||||||||  | ||||| ||| |||| |||||||||||||||||||  ||||| |||||| |||||||
----------------------------------------------------------ctttattcattttttaataatgtcatgcatttgttgtatcaggtgtctctgcttt-cctttgtctacaaactaattttctttttatttgttacttgaacagGAACTCCTTGCTTCCGTGGATATGGAAGGCGTAATGGAGAACGTAGGAGAAAGTCTGTTCGTGGGTGCATTGTCAGCCCAGACCTCTCTGTTTTGAACTT

upper sequence: Vv18s0001g06290.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA15G08210.1 (Glycine max), 3'ss of exon 4
gtgggtttttggtggtatattagtgttggtgcactgaccaccattccttcaagt-ttaagatggatcacggccagttagaagcatgttttgctaggaccatgttttgttgccttgtcatagatgatggatgaaaactgttctagttttgcttaagcagGAACCCCTTGCTTTCGAGGATATGGTAGGCGTAATGGAGAGAGGAGGAGGAAGGCTGTACGTGGGTGCATTGTCAGCCAGGACCTTTCTGTTCTGAACTT
                                               || | ||  |    |   | |   |  |    | | |  ||||       |||   ||||||   || |||   ||| |  ||   |  ||||      || |  | |||||||| ||||| || || || ||||| ||||| ||||||||| | ||||||||| |||| |||||||||||||||||||  ||||| |||||||| |||||
----------------------------------------------tttgaggtactgtttttttttataactggactcaggaaactttta-----gccaacctttgttattttttca---atgttaaatttcatttgttgc----ttacccatgcagGAACTCCTTGTTTCCGTGGTTATGGAAGGCGCAATGGAGAGCGTAGGAGGAAGTCTGTTCGTGGGTGCATTGTCAGCCCTGACCTCTCTGTTCTCAACTT

upper sequence: Vv18s0001g06290.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA13G31130.1 (Glycine max), 3'ss of exon 5
gtgggtttttggtggtatattagtgttggtgcactgaccaccattccttcaagtttaagatggatcacggccagttagaagcatgttttgctaggaccatgttttgttgccttgtcatagatgatggatgaaaactgttctagttttgcttaagcagGAACCCCTTGCTTTCGAGGATATGGTAGGCGTAATGGAGAGAGGAGGAGGAAGGCTGTACGTGGGTGCATTGTCAGCCAGGACCTTTCTGTTCTGAACTT
                                                  ||| | |   || ||    |    ||||   | || |||   |  ||||  || ||||       ||   ||| |  ||     |||||      || | | ||||||||| ||||| || || || || || ||||| ||||||||| | ||||||||| |||| |||||||||||||||||||  ||||| |||||||| |||||
-----------------------------------------------agtaaggtca---tgtatatttgttttttaggtac-tgctttttcataaccaatttatgttattggtcca---atgttaaattt---ctgtttgttgcttacctgagcagGAACTCCTTGTTTCCGTGGTTACGGAAGGCGCAATGGAGAGCGTAGGAGGAAGTCTGTTCGTGGGTGCATTGTCAGCCCTGACCTCTCTGTTCTCAACTT

upper sequence: Vv18s0001g06290.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA13G24630.1 (Glycine max), 3'ss of exon 4
gtgggtttttggtggtatattagtgttggtgcactgaccaccattccttcaagtttaagatggatcacggcca--gttagaagcatgttttgctaggaccatgttttgttgccttgtcatagatgatggatgaaaactgttctagttttgcttaagcagGAACCCCTTGCTTTCGAGGATATGGTAGGCGTAATGGAGAGAGGAGGAGGAAGGCTGTACGTGGGTGCATTGTCAGCCAGGACCTTTCTGTTCTGAACTT
                                                     | |   |||       ||      ||||| | | |||    | ||     | |  | ||| ||   |   ||  |  |    | | || |  ||    || ||||||||| ||||| || || |||||||| ||||| ||||||||| | || |||||  |||| |||||||||||||||||||  ||||| |||||| |||||||
----------------------------------------------------atatgcaatgacctttagctttcactagaaacctatttatgcaagat----tctcatagccatgct-tgtttgcagtcttgttaatctttt--ttgcatttgagcagGAACTCCTTGTTTCCGTGGATATGGAAGGCGCAATGGAGAGCGTAGAAGGAAATCTGTTCGTGGGTGCATTGTCAGCCCAGACCTCTCTGTTTTGAACTT

upper sequence: Vv18s0001g06290.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA07G31840.3 (Glycine max), 3'ss of exon 3
gtgggtttttggtggtatattagtgttggtgcactgaccaccattccttcaagtttaagatggatcacggcc--agttagaagcatgttttgctaggaccatgttttgttgccttgtcatagatgatggatgaaaactgttctagttttgcttaagcagGAACCCCTTGCTTTCGAGGATATGGTAGGCGTAATGGAGAGAGGAGGAGGAAGGCTGTACGTGGGTGCATTGTCAGCCAGGACCTTTCTGTTCTGAACTT
                                                     | |   |||  |    ||   |  ||||| | | |||   |     || | ||    ||| |||  ||  ||  |  |    | |||| |  ||    || ||||||||| ||||| || || |||||||| ||||| ||||||||| | || |||||| |||| ||||| ||||||||||| |  || || |||||| ||||| |
---------------------------------------------------tttatgcaatgatttttagctttaactagaaacct-tttcattg----caggattctcagccatgtt-tatttgcagacttgttaatgtttt--ttgcatttgagcagGAACTCCTTGTTTCCGTGGATATGGAAGGCGCAATGGAGAGCGTAGAAGGAAGTCTGTTCGTGGTTGCATTGTCAGTCCAGATCTCTCTGTTTTGAACCT

upper sequence: Vv18s0001g06290.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA16G09330.1 (Glycine max), 3'ss of exon 2
gtgggtttttggtggtatattagtgttggtgcactgaccaccattccttcaagtttaagatggatcacggccagttagaagcatgttttgctaggaccatgttttgttgccttgtcatagatgatggatgaaaactgttctagttttgcttaagcagGAACCCCTTGCTTTCGAGGATATGGTAGGCGTAATGGAGAGAGGAGGAGGAAGGCTGTACGTGGGTGCATTGTCAGCCAGGACCTTTCTGTTCTGAACTT
                                                     |||| |   |||    | |  ||      |||  ||  ||   |  |      | | ||||    | ||  |  ||      ||   |  || || |  | ||||||| |||||||| || ||||| || ||||| || |||||| | ||||||||   ||| || ||||||||||||||||  || || |||||||||||| |
-----------------------------------------------------tttatggcagatgcatgtctctttatgctatgactt--tattccttttgaagatggtcttgagggatatttttaattctctttgcattgattgtgtt--aacagGAACTCCTTGCTTCCGTGGATACGGAAGGCGCAACGGAGAGCGAAGGAGGAAATTTGTTCGCGGGTGCATTGTCAGCCCAGATCTCTCTGTTCTGAACCT

upper sequence: Vv18s0001g06290.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: AT4G31700.1 (Arabidopsis thaliana), 3'ss of exon 4
gtgggtttttggtggtatattagtgttggtgcactgaccaccattccttcaagtttaagatggatcacggccagttagaagcatgttttgctaggaccatgttttgttgccttgtcatagatgatggatgaaaactgttctagttttgcttaagcagGAACCCCTTGCTTTCGAGGATATGGTAGGCGTAATGGAGAGAGGAGGAGGAAGGCTGTACGTGGGTGCATTGTCAGCCAGGACCTTTCTGTTCTGAACTT
                        ||   |  ||  |  ||| || |||  | |||   ||  || | ||        |    | |||   |  |    ||||||| ||               | ||| || | ||||   ||  ||  | | ||||||| ||||||||  ||||| |||| ||| | | ||| |||||||| || ||| |||| ||||| |||||||| ||||  || || |||||||||||| |
------------------------gtaactaaacataataccttttcttacacttttgcatctataatgg--------atttgtatttgtgtgtgtgtgtgttttgctg---------------tagattaacattgtttc-gtaatgggtgaacagGAACTCCTTGCTTCAGAGGACATGGAAGGAGAACTGGTGAGAGGAGAAGAAAGTCTGTTCGTGGTTGCATTGTGAGCCCTGATCTCTCTGTTCTGAACCT

upper sequence: Vv18s0001g06290.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: EFJ14726 (Selaginella moellendorffii), 3'ss of exon 3
gtgggtttttggtggtatattagtgttggtgcactgaccaccattccttcaagtttaagatggatcacggccagttagaagcatgttttgctaggaccatgttttgttgccttgtcatagatgatggatgaaaactgttctagttttgcttaagcagGAACCCCTTGCTTTCGAGGATATGGTAGGCGTAATGGAGAGAGGAGGAGGAAGGCTGTACGTGGGTGCATTGTCAGCCAGGACCTTTCTGTTCTGAACTT
                                                                                           ||  || ||| ||  ||    | |  |   |  |   |     ||| | |    || | | | ||||   | |||||||||| || |||||  | ||  |||| ||| ||||||||||| | || ||||| |||||||||||||| || || |||||||| ||  |
------------------------------------------------------------------------------------------gtaaaacgatgcttcttttttcttttctccctctttcgtt----ctgatttgagatt-cgtgaccagGCGACACTTGCTTTCGTGGGTATGGGCGACGCGATGGTGAGCGGAGGAGGAAGTCAGTTCGTGGTTGCATTGTCAGCCATGATCTGTCTGTTCTCAATCT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110710093|gb|EE086127.1|EE086127
EST:     GAAGCAGGGAGTGTTAACTCCTGGTCGTGTTAGTCTCTTGCTCCATAGAG                         GAACCCCTTGCTTTCGAGGATATGGTAGGCGTAATGGAGAGAGGAGGAGGA
genomic: GAAGCAGGGAGTGTTAACTCCTGGTCGTGTTAGTCTCTTGCTCCATAGAGgtgggttttt ... gcttaagcagGAACCCCTTGCTTTCGAGGATATGGTAGGCGTAATGGAGAGAGGAGGAGGA
EST: gi|110731210|gb|EE109174.1|EE109174
EST:     GAAGCAGGGAGTGTTAACTCCTGGTCGTGTTAGTCTCTTGCTCCATAGAG                         GAACCCCTTGCTTTCGAGGATATGGTAGGCGTAATGGAGAGAGGAGGAGGA
genomic: GAAGCAGGGAGTGTTAACTCCTGGTCGTGTTAGTCTCTTGCTCCATAGAGgtgggttttt ... gcttaagcagGAACCCCTTGCTTTCGAGGATATGGTAGGCGTAATGGAGAGAGGAGGAGGA
EST: gi|110369359|gb|EC933517.1|EC933517
EST:     GAAGCAGGGAGTGTTAACTCCTGGTCGTGTTAGTCTCTTGCTCCATAGAG                         GAACCCCTTGCTTTCGAGGATATGGTAGGCGTAATGGAGAGAGGAGGAGGA
genomic: GAAGCAGGGAGTGTTAACTCCTGGTCGTGTTAGTCTCTTGCTCCATAGAGgtgggttttt ... gcttaagcagGAACCCCTTGCTTTCGAGGATATGGTAGGCGTAATGGAGAGAGGAGGAGGA
EST: gi|29782562|gb|CB347995.2|CB347995
EST:     GAAGCAGGGAGTGTTAACTCCTGGTCGTGTTAGTCTCTTGCTCCATAGAG                         GAACCCCTTGCTTTCGAGGATATGGTAGGCGTAATGGAGAGAGGAGGAGGA
genomic: GAAGCAGGGAGTGTTAACTCCTGGTCGTGTTAGTCTCTTGCTCCATAGAGgtgggttttt ... gcttaagcagGAACCCCTTGCTTTCGAGGATATGGTAGGCGTAATGGAGAGAGGAGGAGGA
EST: gi|110724727|gb|EE100810.1|EE100810
EST:     GAAGCAGGGAGTGTTAACTCCTGGTCGTGTTAGTCTCTTGCTCCATAGAG                         GAACCCCTTGCTTTCGAGGATATGGTAGGCGTAATGGAGAGAGGAGGAGGA
genomic: GAAGCAGGGAGTGTTAACTCCTGGTCGTGTTAGTCTCTTGCTCCATAGAGgtgggttttt ... gcttaagcagGAACCCCTTGCTTTCGAGGATATGGTAGGCGTAATGGAGAGAGGAGGAGGA
EST: gi|110694354|gb|EE071389.1|EE071389
EST:     GAAGCAGGGAGTGTTAACTCCTGGTCGTGTTAGTCTCTTGCTCCATAGAG                         GAACCCCTTGCTTTCGAGGATATGGTAGGCGTAATGGAGAGAGGAGGAGGA
genomic: GAAGCAGGGAGTGTTAACTCCTGGTCGTGTTAGTCTCTTGCTCCATAGAGgtgggttttt ... gcttaagcagGAACCCCTTGCTTTCGAGGATATGGTAGGCGTAATGGAGAGAGGAGGAGGA
EST: gi|110701201|gb|EE078523.1|EE078523
EST:     GAAGCAGGGAGTGTTAACTCCTGGTCGTGTTAGTCTCTTGCTCCATAGAG                         GAACCCCTTGCTTTCGAGGATATGGTAGGCGTAATGGAGAGAGGAGGAGGA
genomic: GAAGCAGGGAGTGTTAACTCCTGGTCGTGTTAGTCTCTTGCTCCATAGAGgtgggttttt ... gcttaagcagGAACCCCTTGCTTTCGAGGATATGGTAGGCGTAATGGAGAGAGGAGGAGGA
EST: gi|30124734|gb|CB910073.1|CB910073
EST:     GAAGCAGGGAGTGTTAACTCCTGGTCGTGTTAGTCTCTTGCTCCATAGAG                         GAACCCCTTGCTTTCGAGGATATGGTAGGCGTAATGGAGAGAGGAGGAGGA
genomic: GAAGCAGGGAGTGTTAACTCCTGGTCGTGTTAGTCTCTTGCTCCATAGAGgtgggttttt ... gcttaagcagGAACCCCTTGCTTTCGAGGATATGGTAGGCGTAATGGAGAGAGGAGGAGGA
EST: gi|110426639|gb|EC993054.1|EC993054
EST:     GAAGCAGGGAGTGTTAACTCCTGGTCGTGTTAGTCTCTTGCTCCATAGAG                         GAACCCCTTGCTTTCGAGGATATGGTAGGCGTAATGGAGAGAGGAGGAGGA
genomic: GAAGCAGGGAGTGTTAACTCCTGGTCGTGTTAGTCTCTTGCTCCATAGAGgtgggttttt ... gcttaagcagGAACCCCTTGCTTTCGAGGATATGGTAGGCGTAATGGAGAGAGGAGGAGGA
EST: gi|110422092|gb|EC988404.1|EC988404
EST:     GAAGCAGGGAGTGTTAACTCCTGGTCGTGTTAGTCTCTTGCTCCATAGAG                         GAACCCCTTGCTTTCGAGGATATGGTAGGCGTAATGGAGAGAGGAGGAGGA
genomic: GAAGCAGGGAGTGTTAACTCCTGGTCGTGTTAGTCTCTTGCTCCATAGAGgtgggttttt ... gcttaagcagGAACCCCTTGCTTTCGAGGATATGGTAGGCGTAATGGAGAGAGGAGGAGGA
EST: gi|28962095|gb|CB341128.1|CB341128
EST:     GAAGCAGGGAGTGTTAACTCCTGGTCGTGTTAGTCTCTTGCTCCATAGAG                         GAACCCCTTGCTTTCGAGGATATGGTAGGCGTAAAGGAGAGAGGAGGAGGA
genomic: GAAGCAGGGAGTGTTAACTCCTGGTCGTGTTAGTCTCTTGCTCCATAGAGgtgggttttt ... gcttaagcagGAACCCCTTGCTTTCGAGGATATGGTAGGCGTAATGGAGAGAGGAGGAGGA
EST: gi|110729833|gb|EE106221.1|EE106221
EST:     GAAGCAGGGAGTGTTAACTCCTGGTCGTGTTAGTCTCTTGCTCCATAGAG                         GAACCCCTTGCTTTCGAGGATATGGTAGGCGTAATGGAGAGAGGAGGAGGA
genomic: GAAGCAGGGAGTGTTAACTCCTGGTCGTGTTAGTCTCTTGCTCCATAGAGgtgggttttt ... gcttaagcagGAACCCCTTGCTTTCGAGGATATGGTAGGCGTAATGGAGAGAGGAGGAGGA
EST: gi|71858023|gb|DT007078.1|DT007078
EST:     GAAGCAGGGAGTGTTAACTCCTGGTCGTGTTAGTCTCTTGCTCCATAGAG                         GAACCCCTTGCTTTCGAGGATATGGTAGGCGTAATGGAGAGAGGAGGAGGA
genomic: GAAGCAGGGAGTGTTAACTCCTGGTCGTGTTAGTCTCTTGCTCCATAGAGgtgggttttt ... gcttaagcagGAACCCCTTGCTTTCGAGGATATGGTAGGCGTAATGGAGAGAGGAGGAGGA
EST: gi|110698432|gb|EE075922.1|EE075922
EST:     GAAGCAGGGAGTGTTAACTCCTGGTCGTGTTAGTCTCTTGCTCCATAGAG                         GAACCCCTTGCTTTCGAGGATATGGTAGGCGTAATGGAGAGAGGAGGAGGA
genomic: GAAGCAGGGAGTGTTAACTCCTGGTCGTGTTAGTCTCTTGCTCCATAGAGgtgggttttt ... gcttaagcagGAACCCCTTGCTTTCGAGGATATGGTAGGCGTAATGGAGAGAGGAGGAGGA
EST: gi|110730616|gb|EE107900.1|EE107900
EST:     GAAGCAGGGAGTGTTAACTCCTGGTCGTGTTAGTCTCTTGCTCCATAGAG                         GAACCCCTTGCTTTCGAGGATATGGTAGGCGTAATGGAGAGAGGAGGAGGA
genomic: GAAGCAGGGAGTGTTAACTCCTGGTCGTGTTAGTCTCTTGCTCCATAGAGgtgggttttt ... gcttaagcagGAACCCCTTGCTTTCGAGGATATGGTAGGCGTAATGGAGAGAGGAGGAGGA
EST: gi|110708627|gb|EE086388.1|EE086388
EST:     GAAGCAGGGAGTGTTAACTCCTGGTCGTGTTAGTCTCTTGCTCCATAGAG                         GAACCCCTTGCTTTCGAGGATATGGTAGGCGTAATGGAGAGAGGAGGAGGA
genomic: GAAGCAGGGAGTGTTAACTCCTGGTCGTGTTAGTCTCTTGCTCCATAGAGgtgggttttt ... gcttaagcagGAACCCCTTGCTTTCGAGGATATGGTAGGCGTAATGGAGAGAGGAGGAGGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttgttgccttgtcatagatgatggatgaaaactgttctagttttgcttaagcagGAACCCCTTGCTTTCGAGGATATGGTAGGCGTAATGGAGAGAGGAGGAGGAAGGCTGTACGTGGGTGCATTGTCAGCCAGGACCTTTCTGTTCTGAACTT
                                         ttttgctt  CT-rich tract
                         atgaaaa  TA-rich tract