Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttgatcatgctctctgatttggactatttatttttttggtttcttttgtgttcttacatcaagaacggaggtctagaggtttttcctccactttcttgagttgttaaggttctgttttgttttaaatttgtgttgcacagGGCTTGCCACCTTGCAAAACAAGCTTTTGATGAGGCTATTGCAGAACTTGATAGCCTGAATGAAGAATCATACAAGGATAGTACCCTTATTATGCAGCTT

Basic information

species Vitis vinifera
transcript Vv18s0001g05720.t01
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv18s0001g05720.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: AT1G22300.3 (Arabidopsis thaliana), 3'ss of exon 4
gttgatcatgctctctgatttggactatttatttttttggtttcttttgtgttcttacatcaagaacggaggtctagaggtttttcctccactttcttgagttgttaaggttctgttttgttttaaatttgtgttgcacagGGCTTGCCACCTTGCAAAACAAGCTTTTGATGAGGCTATTGCAGAACTTGATAGCCTGAATGAAGAATCATACAAGGATAGTACCCTTATTATGCAGCTT
                                      | ||  |||||| || ||  ||  |  |     ||     |  | |     || |||||     | | ||                 | | ||| ||| |||| || |||||  | || || ||||| || ||||| || ||||| |||||||| ||||| || || ||||||||||| || || || |||||||||||||| 
--------------------------------------gtttgtttttgtatt-ttggattgaacataatagt----ggaatctgtggtcattttctgacactatgaa-----------------actatgtattgtacagCGCATGCCAATTGGCTAAGCAAGCATTCGATGATGCAATTGCTGAACTTGACAGCCTCAACGAGGAATCATACAAAGACAGCACTCTTATTATGCAGCTA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|83277401|gb|DV941409.1|DV941409
EST:     GCTTTGAACTTTTCTGTCTTCTACTATGAAATTTTGAACTCCCCAGAGAG                         GGCTTGCCACCTTGCAAAACAAGCTTTTGATGAGGCTATTGCAGAACTTGA
genomic: GCTTTGAACTTTTCTGTCTTCTACTATGAAATTTTGAACTCCCCAGAGAGgttgatcatg ... tgttgcacagGGCTTGCCACCTTGCAAAACAAGCTTTTGATGAGGCTATTGCAGAACTTGA
EST: gi|110709573|gb|EE085152.1|EE085152
EST:     GCTTTGAACTTTTCTGTCTTCTACTATGAAATTTTGAACTCCCCAGAGAG                         GGCTTGCCACCTTGCAAAACAAGCTTTTGATGAGGCTATTGCAGAACTTGA
genomic: GCTTTGAACTTTTCTGTCTTCTACTATGAAATTTTGAACTCCCCAGAGAGgttgatcatg ... tgttgcacagGGCTTGCCACCTTGCAAAACAAGCTTTTGATGAGGCTATTGCAGAACTTGA
EST: gi|351056616|gb|FQ442444.1|FQ442444
EST:     GCTTTGAACTTTTCTGTCTTCTACTATGAAATTTTGAACTCCCCAGAGAG                         GGCTTGCCGCCTTGCAAAACAAGCTTTTGATGAGGCTATTGCAGAACTTGA
genomic: GCTTTGAACTTTTCTGTCTTCTACTATGAAATTTTGAACTCCCCAGAGAGgttgatcatg ... tgttgcacagGGCTTGCCACCTTGCAAAACAAGCTTTTGATGAGGCTATTGCAGAACTTGA
EST: gi|349828294|gb|FQ416247.1|FQ416247
EST:     GCTTTGAACTTCTCTGTCTTCTACTATGAAATTTTGAACTCCCCAGAGAG                         GGCTTGCCACCTTGCAAAACAAGCTTATGATGAGGCTATTGCAGAACTTGA
genomic: GCTTTGAACTTTTCTGTCTTCTACTATGAAATTTTGAACTCCCCAGAGAGgttgatcatg ... tgttgcacagGGCTTGCCACCTTGCAAAACAAGCTTTTGATGAGGCTATTGCAGAACTTGA
EST: gi|110397825|gb|EC963748.1|EC963748
EST:     GCTTTGAACTTTTCTGTCTTCTACTATGAAATTTTGAACTCCCCAGAGAG                         GGCTTGCCACCTTGCAAAACAAGCTTTTGATGAGGCTATTGCAGAACTTGA
genomic: GCTTTGAACTTTTCTGTCTTCTACTATGAAATTTTGAACTCCCCAGAGAGgttgatcatg ... tgttgcacagGGCTTGCCACCTTGCAAAACAAGCTTTTGATGAGGCTATTGCAGAACTTGA
EST: gi|30129889|gb|CB915228.1|CB915228
EST:     GCTTTGAACTTTTCTGTCTTCTACTATGAAATTTTGAACTCCCCAGAGAG                         GGCTTGCCACCTTGCAAAACAAGCTTTTGATGAGGCTATTGCAGAACTTGA
genomic: GCTTTGAACTTTTCTGTCTTCTACTATGAAATTTTGAACTCCCCAGAGAGgttgatcatg ... tgttgcacagGGCTTGCCACCTTGCAAAACAAGCTTTTGATGAGGCTATTGCAGAACTTGA
EST: gi|351025290|gb|FQ434303.1|FQ434303
EST:     GCTTTGAACTTTTCTGTCTTCTACTATGAAATTTTGAACTCCCCAGAGAG                         GGCTTGCCACCTTGCAAAACAAGCTTTTGATGAGGCTATTGCAGAACTTGA
genomic: GCTTTGAACTTTTCTGTCTTCTACTATGAAATTTTGAACTCCCCAGAGAGgttgatcatg ... tgttgcacagGGCTTGCCACCTTGCAAAACAAGCTTTTGATGAGGCTATTGCAGAACTTGA
EST: gi|71890616|gb|DT039671.1|DT039671
EST:     GCTTTGAACTTTTCTGTCTTCTACTATGAAATTTTGAACTCCCCAGAGAG                         GGCTTGCCACCTTGCAAAACAAGCTTTTGATGAGGCTATTGCAGAACTTGA
genomic: GCTTTGAACTTTTCTGTCTTCTACTATGAAATTTTGAACTCCCCAGAGAGgttgatcatg ... tgttgcacagGGCTTGCCACCTTGCAAAACAAGCTTTTGATGAGGCTATTGCAGAACTTGA
EST: gi|110364443|gb|EC924186.1|EC924186
EST:     GCTTTGAACTTTTCTGTCTTCTACTATGAAATTTTGAACTCCCCAGAGAG                         GGCTTGCCACCTTGCAAAACAAGCTTTTGATGAGGCTATTGCAGAACTTGA
genomic: GCTTTGAACTTTTCTGTCTTCTACTATGAAATTTTGAACTCCCCAGAGAGgttgatcatg ... tgttgcacagGGCTTGCCACCTTGCAAAACAAGCTTTTGATGAGGCTATTGCAGAACTTGA
EST: gi|30133232|gb|CB918571.1|CB918571
EST:     GCTTTGAACTTTTCTGTCTTCTACTATGANATTTTGAACTCCCCAGAGAG                         GGCTTGCCACCTTGCAAAACAAGCTTTTGATGAGGCTATTGCAGAACTTGA
genomic: GCTTTGAACTTTTCTGTCTTCTACTATGAAATTTTGAACTCCCCAGAGAGgttgatcatg ... tgttgcacagGGCTTGCCACCTTGCAAAACAAGCTTTTGATGAGGCTATTGCAGAACTTGA
EST: gi|351054545|gb|FQ452021.1|FQ452021
EST:     GCTTTGAACTTTTCTGTCTTCTACTATGAAATTTTGAACTCCCCAGAGAG                         GGCTTGCCACCTTGCAAAACAAGCTTTTGATGAGGCTATTGCAGAACTTGA
genomic: GCTTTGAACTTTTCTGTCTTCTACTATGAAATTTTGAACTCCCCAGAGAGgttgatcatg ... tgttgcacagGGCTTGCCACCTTGCAAAACAAGCTTTTGATGAGGCTATTGCAGAACTTGA
EST: gi|71890882|gb|DT039937.1|DT039937
EST:     GCTTTGAACTTTTCTGTCTTCTACTATGAAATTTTGAACTCCCCAGAGAG                         GGCTTGCCACCTTGCAAAACAAGCTTTTGATGAGGCTATTGC
genomic: GCTTTGAACTTTTCTGTCTTCTACTATGAAATTTTGAACTCCCCAGAGAGgttgatcatg ... tgttgcacagGGCTTGCCACCTTGCAAAACAAGCTTTTGATGAGGCTATTGC
EST: gi|32244981|gb|CD710800.1|CD710800
EST:     GCTTTGAACTTTTCTGTCTTTTACTATGAAATTTTGAACTCCCCAGAGAG                         GGCTTGCCACCTTGCAAAACAAGCTTTTGATGAGGCTATTGCAGAACTTGA
genomic: GCTTTGAACTTTTCTGTCTTCTACTATGAAATTTTGAACTCCCCAGAGAGgttgatcatg ... tgttgcacagGGCTTGCCACCTTGCAAAACAAGCTTTTGATGAGGCTATTGCAGAACTTGA
EST: gi|34363089|gb|CF404674.1|CF404674
EST:     GCTTTGAACTTTTCTGTCTTCTACTATGAAATTTTGAACTCCCCAGAGAG                         GGCTTGCCACCTTGCAAAACAAGCTTTTGATGAGGCTATTGCAGAACTTGA
genomic: GCTTTGAACTTTTCTGTCTTCTACTATGAAATTTTGAACTCCCCAGAGAGgttgatcatg ... tgttgcacagGGCTTGCCACCTTGCAAAACAAGCTTTTGATGAGGCTATTGCAGAACTTGA
EST: gi|30254150|gb|CB971165.1|CB971165
EST:     GCTTTGAACTTTCCTGTCTTCTACTATGAAATTTTGAACTCCCCAGAGAG                         GGCTTGCCACCTTGCAAAACAAGCTTTTGATGAGGCTATTGCAGAACTTGA
genomic: GCTTTGAACTTTTCTGTCTTCTACTATGAAATTTTGAACTCCCCAGAGAGgttgatcatg ... tgttgcacagGGCTTGCCACCTTGCAAAACAAGCTTTTGATGAGGCTATTGCAGAACTTGA
EST: gi|351012745|gb|FQ430308.1|FQ430308
EST:     GCTTTGAACTTCTCTGTCTTCTACTATGAAATTTTGAACTCCCCAGAGAG                         GGCTTGCCACCTTGCAAAACAAGCTTTTGATGAGGCTATTGCAGAACTTGA
genomic: GCTTTGAACTTTTCTGTCTTCTACTATGAAATTTTGAACTCCCCAGAGAGgttgatcatg ... tgttgcacagGGCTTGCCACCTTGCAAAACAAGCTTTTGATGAGGCTATTGCAGAACTTGA
EST: gi|87586625|gb|DY474825.1|DY474825
EST:     GCTTTGAACTTTTCTGTCTTCTACTATGAAATTTTGAACTCCCCAGAGAG                         GGCTTGCCACCTTGCAAAACAAGCTTTTGATGAGGCTATTGCAGAACTTGA
genomic: GCTTTGAACTTTTCTGTCTTCTACTATGAAATTTTGAACTCCCCAGAGAGgttgatcatg ... tgttgcacagGGCTTGCCACCTTGCAAAACAAGCTTTTGATGAGGCTATTGCAGAACTTGA
EST: gi|110405257|gb|EC970796.1|EC970796
EST:     GCTTTGAACTTTTCTGTCTTCTACTATGAAATTTTGAACTCCCCAGAGAG                         GGCTTGCCACCTTGCAAAACAAGCTTTTGATGAGGCTATTGCAGAACTTGA
genomic: GCTTTGAACTTTTCTGTCTTCTACTATGAAATTTTGAACTCCCCAGAGAGgttgatcatg ... tgttgcacagGGCTTGCCACCTTGCAAAACAAGCTTTTGATGAGGCTATTGCAGAACTTGA
EST: gi|27755229|gb|CB035984.1|CB035984
EST:     GCTTTGAACTTTTCTGTCTTCTACTATGAAATTTTGAACTCCCCAGAGAG                         GGCTTGCCACCTTGCAAAACAAGCTTTTGATGAGGCTATTGCAGAACTTGA
genomic: GCTTTGAACTTTTCTGTCTTCTACTATGAAATTTTGAACTCCCCAGAGAGgttgatcatg ... tgttgcacagGGCTTGCCACCTTGCAAAACAAGCTTTTGATGAGGCTATTGCAGAACTTGA
EST: gi|32245214|gb|CD711033.1|CD711033
EST:     GCTTTGAACTTTTCTGTCTTCTACTATGAAATTTTGAACTCCCCAGAGAG                         GGCTTGCCACCTTGCAAAACAAGCTTTTGATGAGGCTATTGCAGAACTTGA
genomic: GCTTTGAACTTTTCTGTCTTCTACTATGAAATTTTGAACTCCCCAGAGAGgttgatcatg ... tgttgcacagGGCTTGCCACCTTGCAAAACAAGCTTTTGATGAGGCTATTGCAGAACTTGA
EST: gi|18458782|gb|BM437060.1|BM437060
EST:     GCTTTGAACTTTTCTGTCTTCTACTATGAAATTTTGAACTCCCCAGAGAG                         GGCTTGCCACCTTGCAAAACAAGCTTTTGATGAGGCTATTGCAGAACTTGA
genomic: GCTTTGAACTTTTCTGTCTTCTACTATGAAATTTTGAACTCCCCAGAGAGgttgatcatg ... tgttgcacagGGCTTGCCACCTTGCAAAACAAGCTTTTGATGAGGCTATTGCAGAACTTGA
EST: gi|71890887|gb|DT039942.1|DT039942
EST:     GCTTTGAACTTTTCTGTCTTCTACTATGAAATTTTGAACTCCCCAGAGAG                         GGCTTGCCACCTTGCAAAACAAGCTTTTGATGAGGCTATTGCAGAACTTGA
genomic: GCTTTGAACTTTTCTGTCTTCTACTATGAAATTTTGAACTCCCCAGAGAGgttgatcatg ... tgttgcacagGGCTTGCCACCTTGCAAAACAAGCTTTTGATGAGGCTATTGCAGAACTTGA
EST: gi|71890644|gb|DT039699.1|DT039699
EST:     GCTTTGAACTTTTCTGTCTTCTACTATGAAATTTTGAACTCCCCAGAGAG                         GGCTTGCCACCTTGCAAAACAAGCTTTTGATGAGGCTATTGCAGAACTTGA
genomic: GCTTTGAACTTTTCTGTCTTCTACTATGAAATTTTGAACTCCCCAGAGAGgttgatcatg ... tgttgcacagGGCTTGCCACCTTGCAAAACAAGCTTTTGATGAGGCTATTGCAGAACTTGA
EST: gi|110395364|gb|EC961026.1|EC961026
EST:     GCTTTGAACTTTTCTGTCTTCTACTATGAAATTTTGAACTCCCCAGAGAG                         GGCTTGCCACCTTGCAAAACAAGCTTTTGATGAGGCTATTGCAGAACTTGA
genomic: GCTTTGAACTTTTCTGTCTTCTACTATGAAATTTTGAACTCCCCAGAGAGgttgatcatg ... tgttgcacagGGCTTGCCACCTTGCAAAACAAGCTTTTGATGAGGCTATTGCAGAACTTGA
EST: gi|110364219|gb|EC923597.1|EC923597
EST:     GCTTTGAACTTTTCTGTCTTCTACTATGAAATTTTGAACTCCCCAGAGAG                         GGCTTGCCACCTTGCAAAACAAGCTTTTGATGAGGCTATTGCAGAACTTGA
genomic: GCTTTGAACTTTTCTGTCTTCTACTATGAAATTTTGAACTCCCCAGAGAGgttgatcatg ... tgttgcacagGGCTTGCCACCTTGCAAAACAAGCTTTTGATGAGGCTATTGCAGAACTTGA
EST: gi|110701469|gb|EE079073.1|EE079073
EST:     GCTTTGAACTTTTCTGTCTTCTACTATGAAATTTTGAACTCCCCAGAGAG                         GGCTTGCCACCTTGCAAAACAAGCTTTTGATGAGGCTATTGCAGAACTTGA
genomic: GCTTTGAACTTTTCTGTCTTCTACTATGAAATTTTGAACTCCCCAGAGAGgttgatcatg ... tgttgcacagGGCTTGCCACCTTGCAAAACAAGCTTTTGATGAGGCTATTGCAGAACTTGA
EST: gi|110424050|gb|EC990403.1|EC990403
EST:     TTCTGTCTTCTACTATGAAATTTTGAACTCCCTAGAGAG                         GGCTTGCCACCTTGCAAAACAAGCTTTTGATGAGGCTATTGCAGAACTTGA
genomic: TTCTGTCTTCTACTATGAAATTTTGAACTCCCCAGAGAGgttgatcatg ... tgttgcacagGGCTTGCCACCTTGCAAAACAAGCTTTTGATGAGGCTATTGCAGAACTTGA
EST: gi|110422906|gb|EC989240.1|EC989240
EST:     GCTTTGAACTTTTCTGTCTTCTACTATGAAATTTTGAACTCCCCAGAGAG                         GGCTTGCCACCTTGCAAAACAAGCTTTTGATGAGGCTATTGCAGAACTTGA
genomic: GCTTTGAACTTTTCTGTCTTCTACTATGAAATTTTGAACTCCCCAGAGAGgttgatcatg ... tgttgcacagGGCTTGCCACCTTGCAAAACAAGCTTTTGATGAGGCTATTGCAGAACTTGA
EST: gi|30134657|gb|CB919995.1|CB919995
EST:     GCTTTGAACTTTTCTGTCTTCTACTATGANATTTTGAACTCCCCAGAGAG                         GGCTTGCCACCTTGCAAAACAAGCTTTTGATGAGGCTATTGCAGAACTTGA
genomic: GCTTTGAACTTTTCTGTCTTCTACTATGAAATTTTGAACTCCCCAGAGAGgttgatcatg ... tgttgcacagGGCTTGCCACCTTGCAAAACAAGCTTTTGATGAGGCTATTGCAGAACTTGA
EST: gi|110417293|gb|EC983336.1|EC983336
EST:     GCTTTGAACTTTTCTGTCTTCTACTATGAAATTTTGAACTCCCCAGAGAG                         GGCTTGCCACCTTGCAAAACAAGCTTTTGATGAGGCTATTGCAGAACTTGA
genomic: GCTTTGAACTTTTCTGTCTTCTACTATGAAATTTTGAACTCCCCAGAGAGgttgatcatg ... tgttgcacagGGCTTGCCACCTTGCAAAACAAGCTTTTGATGAGGCTATTGCAGAACTTGA
EST: gi|71865310|gb|DT014365.1|DT014365
EST:     GCTTTGAACTTTTCTGTCTTCTACTATGAAATTTTGAACTCCCCAGAGAG                         GGCTTGCCACCTTGCAAAACAAGCTTTTGATGAGGCTATTGCAGAACTTGA
genomic: GCTTTGAACTTTTCTGTCTTCTACTATGAAATTTTGAACTCCCCAGAGAGgttgatcatg ... tgttgcacagGGCTTGCCACCTTGCAAAACAAGCTTTTGATGAGGCTATTGCAGAACTTGA
EST: gi|110419923|gb|EC986180.1|EC986180
EST:     GCTTTGAACTTTTCTGTCTTCTACTATGAAATTTTGAACTCCCCAGAGAG                         GGCTTGCCACCTTGCAAAACAAGCTTTTGATGAGGCTATTGCAGAACTTGA
genomic: GCTTTGAACTTTTCTGTCTTCTACTATGAAATTTTGAACTCCCCAGAGAGgttgatcatg ... tgttgcacagGGCTTGCCACCTTGCAAAACAAGCTTTTGATGAGGCTATTGCAGAACTTGA
EST: gi|110700774|gb|EE077725.1|EE077725
EST:     GCTTTGAACTTTTCTGTCTTCTACTATGAAATTTTGAACTCCCCAGAGAG                         GGCTTGCCACCTTGCAAAACAAGCTTTTGATGAGGCTATTGCAGAACTTGA
genomic: GCTTTGAACTTTTCTGTCTTCTACTATGAAATTTTGAACTCCCCAGAGAGgttgatcatg ... tgttgcacagGGCTTGCCACCTTGCAAAACAAGCTTTTGATGAGGCTATTGCAGAACTTGA
EST: gi|27580489|gb|CB003184.1|CB003184
EST:     GCTTTGAACTTTTCTGTCTTCTACTATGAAATTTTGAACTCCCCAGAGAG                         GGCTTGCCACCTTGCAAAACAAGCTTTTGATGAGGCTATTGCAGAACTTGA
genomic: GCTTTGAACTTTTCTGTCTTCTACTATGAAATTTTGAACTCCCCAGAGAGgttgatcatg ... tgttgcacagGGCTTGCCACCTTGCAAAACAAGCTTTTGATGAGGCTATTGCAGAACTTGA
EST: gi|71887923|gb|DT036978.1|DT036978
EST:     GCTTTGAACTTTTCTGTCTTCTACTATGAAATTTTGAACTCCCCAGAGAG                         GGCTTGCCACCTTGCAAAACAAGCTTTTGATGAGGCTATTGCAGAACTTGA
genomic: GCTTTGAACTTTTCTGTCTTCTACTATGAAATTTTGAACTCCCCAGAGAGgttgatcatg ... tgttgcacagGGCTTGCCACCTTGCAAAACAAGCTTTTGATGAGGCTATTGCAGAACTTGA
EST: gi|351040928|gb|FQ443704.1|FQ443704
EST:     GCTTTGAACTTTTCTGTCTTCTACTATGAAATTTTGAACTCCCCAGAGAG                         GGCTTGCCACCTTGCAAAACAAGCTTTTGATGAGGCTATTGCAGAACTTGA
genomic: GCTTTGAACTTTTCTGTCTTCTACTATGAAATTTTGAACTCCCCAGAGAGgttgatcatg ... tgttgcacagGGCTTGCCACCTTGCAAAACAAGCTTTTGATGAGGCTATTGCAGAACTTGA
EST: gi|110370298|gb|EC929339.1|EC929339
EST:     GCTTTGAACTTTTCTGTCTTCTACTATGAAATTTTGAACTCCCCAGAGAG                         GGCTTGCCACCTTGCAAAACAAGCTTTTGATGAGGCTATTGCAGAACTTGA
genomic: GCTTTGAACTTTTCTGTCTTCTACTATGAAATTTTGAACTCCCCAGAGAGgttgatcatg ... tgttgcacagGGCTTGCCACCTTGCAAAACAAGCTTTTGATGAGGCTATTGCAGAACTTGA
EST: gi|110411588|gb|EC977309.1|EC977309
EST:     GCTTTGAACTTTTCTGTCTTCTACTATGAAATTTTGAACTCCCCAGAGAG                         GGCTTGCCACCTTGCAAAACAAGCTTTTGATGAGGCTATTGCAGAACTTGA
genomic: GCTTTGAACTTTTCTGTCTTCTACTATGAAATTTTGAACTCCCCAGAGAGgttgatcatg ... tgttgcacagGGCTTGCCACCTTGCAAAACAAGCTTTTGATGAGGCTATTGCAGAACTTGA
EST: gi|18459307|gb|BM437585.1|BM437585
EST:     GCTTTGAACTTTTCTGTCTTCTACTATGAAATTTTGAACTCCCCAGAGAG                         GGCTTGCCACCTTGCAAAACAAGCTTTTGATGAGGCTATTGCAGAACTTGA
genomic: GCTTTGAACTTTTCTGTCTTCTACTATGAAATTTTGAACTCCCCAGAGAGgttgatcatg ... tgttgcacagGGCTTGCCACCTTGCAAAACAAGCTTTTGATGAGGCTATTGCAGAACTTGA
EST: gi|30300606|gb|CB977400.1|CB977400
EST:     GCTTTGAACTTTTCTGTCTTCTACTATGAAATTTTGAACTCCCCAGAGAG                         GGCTTGCCACCTTGCAAAACAAGCTTTTGATGAGGCTATTGCAGAACTTGA
genomic: GCTTTGAACTTTTCTGTCTTCTACTATGAAATTTTGAACTCCCCAGAGAGgttgatcatg ... tgttgcacagGGCTTGCCACCTTGCAAAACAAGCTTTTGATGAGGCTATTGCAGAACTTGA
EST: gi|351026498|gb|FQ428510.1|FQ428510
EST:     GCTT-GAACTTTTCTGTCTTCTACTATGAAATTTTGAACTCCCCAGAGAG                         GGCTTGCCACCTTGCAAAACAAGCTTTTGATGAGGCTATTGCAGAACTTGA
genomic: GCTTTGAACTTTTCTGTCTTCTACTATGAAATTTTGAACTCCCCAGAGAGgttgatcatg ... tgttgcacagGGCTTGCCACCTTGCAAAACAAGCTTTTGATGAGGCTATTGCAGAACTTGA
EST: gi|18458453|gb|BM436731.1|BM436731
EST:     GCTTTGAACTTTTCTGTCTTCTACTATGAAATTTTGAACTCCCCAGAGAG                         GGCTTGCCACCTTGCAAAACAAGCTTTTGATGAGGCTATTGCAGAACTTGA
genomic: GCTTTGAACTTTTCTGTCTTCTACTATGAAATTTTGAACTCCCCAGAGAGgttgatcatg ... tgttgcacagGGCTTGCCACCTTGCAAAACAAGCTTTTGATGAGGCTATTGCAGAACTTGA
EST: gi|34549688|gb|CF517920.1|CF517920
EST:     GCTTTGAACTTTTCTGTCTTCTACTATGAAATTTTGAACTCCCCAGGGAG                         GGCTTGCCACCTTGCAAAACAAGCTTTTGATGAGGCTATTGCAGAACTTGA
genomic: GCTTTGAACTTTTCTGTCTTCTACTATGAAATTTTGAACTCCCCAGAGAGgttgatcatg ... tgttgcacagGGCTTGCCACCTTGCAAAACAAGCTTTTGATGAGGCTATTGCAGAACTTGA
EST: gi|18458948|gb|BM437226.1|BM437226
EST:     GCTTTGAACTTTTCTGTCTTCTACTATGAAATTTTGAACTCCCCAGAGAG                         GGCTTGCCACCTTGCAAAACAAGCTTTTGATGAGGCTATTGCAGAACTTGA
genomic: GCTTTGAACTTTTCTGTCTTCTACTATGAAATTTTGAACTCCCCAGAGAGgttgatcatg ... tgttgcacagGGCTTGCCACCTTGCAAAACAAGCTTTTGATGAGGCTATTGCAGAACTTGA
EST: gi|294966583|gb|GW837718.1|GW837718
EST:     GCTTTGAACTTTTCTGTCTTCTACTATGAAATTTTGAACTCCCCAGAGAG                         GGCTTGCCACCCTTGCAAA-CAAGCTTTTGATGAGGCTATTGC
genomic: GCTTTGAACTTTTCTGTCTTCTACTATGAAATTTTGAACTCCCCAGAGAGgttgatcatg ... tgttgcacagGGCTTGCCACC-TTGCAAAACAAGCTTTTGATGAGGCTATTGC
EST: gi|351038901|gb|FQ457576.1|FQ457576
EST:     GCTTTGAACTTTTCTGTCTTCTACTATGAAATTTTGAACTCCCCAGAGAG                         GGCTTGCCACCTTGCAAAACAAGCTTTTGATGAGGCTATTGCAGAACTTGA
genomic: GCTTTGAACTTTTCTGTCTTCTACTATGAAATTTTGAACTCCCCAGAGAGgttgatcatg ... tgttgcacagGGCTTGCCACCTTGCAAAACAAGCTTTTGATGAGGCTATTGCAGAACTTGA
EST: gi|30253800|gb|CB971085.1|CB971085
EST:     GCTTTGAACTTTCCTGTCTTCTACTATGAAATTTTGAACTCCCCAGAGAG                         GGCTTGCCACCTTGCAAAACAAGCTTTTGATGAGGCTATTGCAGAACTTGA
genomic: GCTTTGAACTTTTCTGTCTTCTACTATGAAATTTTGAACTCCCCAGAGAGgttgatcatg ... tgttgcacagGGCTTGCCACCTTGCAAAACAAGCTTTTGATGAGGCTATTGCAGAACTTGA
EST: gi|30300673|gb|CB977467.1|CB977467
EST:     GCTTTGAACTTTTCTGTCTTCTACTATGAAATTTTGAACTCCCCAGAGAG                         GGCTTGCCCCCTTGCAAAACAAGCTTTTGATGAGGCTATTGCAGAACTTGA
genomic: GCTTTGAACTTTTCTGTCTTCTACTATGAAATTTTGAACTCCCCAGAGAGgttgatcatg ... tgttgcacagGGCTTGCCACCTTGCAAAACAAGCTTTTGATGAGGCTATTGCAGAACTTGA
EST: gi|71883642|gb|DT032697.1|DT032697
EST:     GCTTTGAACTTTTCTGTCTTCTACTATGAAATTTTGAACTCCCCAGAGAG                         GGCTTGCCACCTTGCAAAACAAGCTTTTGATGAGGCTATTG
genomic: GCTTTGAACTTTTCTGTCTTCTACTATGAAATTTTGAACTCCCCAGAGAGgttgatcatg ... tgttgcacagGGCTTGCCACCTTGCAAAACAAGCTTTTGATGAGGCTATTG
EST: gi|352798988|gb|FQ480837.1|FQ480837
EST:     GCTTTGAACTTTTCTGTCTTCTACTATGAAATTTTGAACTCCCCAGAGAG                         GGCTTGCCACCTTGCAAAACAAGCTTTTGATGAGGCTATTGCAGAACTTGA
genomic: GCTTTGAACTTTTCTGTCTTCTACTATGAAATTTTGAACTCCCCAGAGAGgttgatcatg ... tgttgcacagGGCTTGCCACCTTGCAAAACAAGCTTTTGATGAGGCTATTGCAGAACTTGA
EST: gi|34362955|gb|CF404540.1|CF404540
EST:     GCTTTGAACTTTTCTGTCTTCTACTATGAAATTTTGAACTCCCCAGAGAG                         GGCTTGCCACCTTGCAAAACAAGCTTTTGATGAGGCTATTGCAGAACTTGA
genomic: GCTTTGAACTTTTCTGTCTTCTACTATGAAATTTTGAACTCCCCAGAGAGgttgatcatg ... tgttgcacagGGCTTGCCACCTTGCAAAACAAGCTTTTGATGAGGCTATTGCAGAACTTGA
EST: gi|71873026|gb|DT022081.1|DT022081
EST:     GCTTTGAACTTTTCTGTCTTCTACTATGAAATTTTGAACTCCCCAGAGAG                         GGCTTGCCACCTTGCAAAACAAGCTTTTGATGAGGCTATTGCAGAACTTGA
genomic: GCTTTGAACTTTTCTGTCTTCTACTATGAAATTTTGAACTCCCCAGAGAGgttgatcatg ... tgttgcacagGGCTTGCCACCTTGCAAAACAAGCTTTTGATGAGGCTATTGCAGAACTTGA
EST: gi|34544771|gb|CF513003.1|CF513003
EST:     GCTTTGAACTTTTCTGTCTTCTACTATGAAATTTTGAACTCCCCAGGGAG                         GGCTTGCCACCTTGCAAAACAAGCTTTTGATGAGGCTATTGCAGAACTTGA
genomic: GCTTTGAACTTTTCTGTCTTCTACTATGAAATTTTGAACTCCCCAGAGAGgttgatcatg ... tgttgcacagGGCTTGCCACCTTGCAAAACAAGCTTTTGATGAGGCTATTGCAGAACTTGA
EST: gi|110708623|gb|EE086376.1|EE086376
EST:     GCTTTGAACTTTTCTGTCTTCTACTATGAAATTTTGAACTCCCCAGAGAG                         GGCTTGCCACCTTGCAAAACAAGCTTTTGATGAGGCTATTGCAGAACTTGA
genomic: GCTTTGAACTTTTCTGTCTTCTACTATGAAATTTTGAACTCCCCAGAGAGgttgatcatg ... tgttgcacagGGCTTGCCACCTTGCAAAACAAGCTTTTGATGAGGCTATTGCAGAACTTGA
EST: gi|71890727|gb|DT039782.1|DT039782
EST:     GCTTTGAACTTTTCTGTCTTCTACTATGAAATTTTGAACTCCCCAGAGAG                         GGCTTGCCACCTTGCAAAACAAGCTTTTGATGAGGCTATTGCAGAACTTGA
genomic: GCTTTGAACTTTTCTGTCTTCTACTATGAAATTTTGAACTCCCCAGAGAGgttgatcatg ... tgttgcacagGGCTTGCCACCTTGCAAAACAAGCTTTTGATGAGGCTATTGCAGAACTTGA
EST: gi|110716449|gb|EE091439.1|EE091439
EST:     GCTTTGAACTTTTCTGTCTTCTACTATGAAATTTTGAACTCCCCAGAGAG                         GGCTTGCCACCTTGCAAAACAAGCTTTTGATGAGGCTATTGCAGAACTTGA
genomic: GCTTTGAACTTTTCTGTCTTCTACTATGAAATTTTGAACTCCCCAGAGAGgttgatcatg ... tgttgcacagGGCTTGCCACCTTGCAAAACAAGCTTTTGATGAGGCTATTGCAGAACTTGA
EST: gi|110368574|gb|EC932559.1|EC932559
EST:     GCTTTGAACTTTTCTGTCTTCTACTATGAAATTTTGAACTCCCCAGAGAG                         GGCTTGCCACCTTGCAAAACAAGCTTTTGATGAGGCTATTGCAGAACTTGA
genomic: GCTTTGAACTTTTCTGTCTTCTACTATGAAATTTTGAACTCCCCAGAGAGgttgatcatg ... tgttgcacagGGCTTGCCACCTTGCAAAACAAGCTTTTGATGAGGCTATTGCAGAACTTGA
EST: gi|77587121|gb|DV222691.1|DV222691
EST:     GCTTTGAACTTTTCTGTCTTCTACTATGAAATTTTGAACTCCCCAGAGAG                         GGCTTGCCACCTTGCAAAACAAGCTTTTGATGAGGCTATTGCAGAACTTGA
genomic: GCTTTGAACTTTTCTGTCTTCTACTATGAAATTTTGAACTCCCCAGAGAGgttgatcatg ... tgttgcacagGGCTTGCCACCTTGCAAAACAAGCTTTTGATGAGGCTATTGCAGAACTTGA
EST: gi|161721649|gb|FC069779.1|FC069779
EST:     GCTTTGAACTTTTCTGTCTTCTACTATGAAATTTTGAACTCCCCAGAGAG                         GGCTTGCCACCTTGCAAAACAAGCTTTTGATGAGGCTATTGCAGAACTTGA
genomic: GCTTTGAACTTTTCTGTCTTCTACTATGAAATTTTGAACTCCCCAGAGAGgttgatcatg ... tgttgcacagGGCTTGCCACCTTGCAAAACAAGCTTTTGATGAGGCTATTGCAGAACTTGA
EST: gi|351036204|gb|FQ464049.1|FQ464049
EST:     GCTTTGAACTTTTCTGTCTTCTACTATGAAATTTTGAACTCCCCAGAGAG                         GGCTTGCCACCTTGCAAAACAAGCTTTTGATGAGGCTATTGCAGAACTTGA
genomic: GCTTTGAACTTTTCTGTCTTCTACTATGAAATTTTGAACTCCCCAGAGAGgttgatcatg ... tgttgcacagGGCTTGCCACCTTGCAAAACAAGCTTTTGATGAGGCTATTGCAGAACTTGA
EST: gi|161712664|gb|FC062236.1|FC062236
EST:     GCTTTGAACTTTTCTGTCTTCTACTATGAAATTTTGAACTCCCCAGAGAG                         GGCTTGCCACCTTGCAAAA
genomic: GCTTTGAACTTTTCTGTCTTCTACTATGAAATTTTGAACTCCCCAGAGAGgttgatcatg ... tgttgcacagGGCTTGCCACCTTGCAAAA
EST: gi|77579060|gb|DV218356.1|DV218356
EST:     GCTTTGAACTTTTCTGTCTTCTACTATGAAATTTTGAACTCCCCAGAGAG                         GGCTTGCCACCTTGCAAAACAAGCTTTTGATGAGGCTATTGCAGAACTTGA
genomic: GCTTTGAACTTTTCTGTCTTCTACTATGAAATTTTGAACTCCCCAGAGAGgttgatcatg ... tgttgcacagGGCTTGCCACCTTGCAAAACAAGCTTTTGATGAGGCTATTGCAGAACTTGA
EST: gi|351022476|gb|FQ446998.1|FQ446998
EST:     GCTTTGAACTTTTCTGTCTTCTACTATGAAATTTTGAACTCCCCAGAGAG                         GGCTTGCCACCTTGCAAAACAAGCTT--GATGAGGCTATTGCAGAACTTGA
genomic: GCTTTGAACTTTTCTGTCTTCTACTATGAAATTTTGAACTCCCCAGAGAGgttgatcatg ... tgttgcacagGGCTTGCCACCTTGCAAAACAAGCTTTTGATGAGGCTATTGCAGAACTTGA
EST: gi|110401144|gb|EC967739.1|EC967739
EST:     GCTTTGAACTTTTCTGTCTTCTACTATGAAATTTTGAACTCCCCAGAGAG                         GGCTTGCCACCTTGCAAAACAAGCTTTTGATGAGGCTATTGCAGAACTTGA
genomic: GCTTTGAACTTTTCTGTCTTCTACTATGAAATTTTGAACTCCCCAGAGAGgttgatcatg ... tgttgcacagGGCTTGCCACCTTGCAAAACAAGCTTTTGATGAGGCTATTGCAGAACTTGA
EST: gi|110708397|gb|EE085894.1|EE085894
EST:     GCTTTGAACTTTTCTGTCTTCTACTATGAAATTTTGAACTCCCCAGAGAG                         GGCTTGCCACCTTGCAAAACAAGCTTTTGATGAGGCTATTGCAAAACTTGA
genomic: GCTTTGAACTTTTCTGTCTTCTACTATGAAATTTTGAACTCCCCAGAGAGgttgatcatg ... tgttgcacagGGCTTGCCACCTTGCAAAACAAGCTTTTGATGAGGCTATTGCAGAACTTGA
EST: gi|351033022|gb|FQ461911.1|FQ461911
EST:     GCTTTGAACTTTTCTGTCTTCTACTATGAAATTTTGAACTCCCCAGAGAG                         GGCTTGCCACCTTGCAAAACAAGCTTTTGATGAGGCTATTGCAGAACTTGA
genomic: GCTTTGAACTTTTCTGTCTTCTACTATGAAATTTTGAACTCCCCAGAGAGgttgatcatg ... tgttgcacagGGCTTGCCACCTTGCAAAACAAGCTTTTGATGAGGCTATTGCAGAACTTGA
EST: gi|30133595|gb|CB918934.1|CB918934
EST:     GCTTTGAACTTTTCTGTCTTCTACTATGAAATTTTGAACTCCCCAGAGAG                         GGCTTGCCACCTTGCAAAACAAGCTTTTGATGAGGCTATTGCAGAACTTGA
genomic: GCTTTGAACTTTTCTGTCTTCTACTATGAAATTTTGAACTCCCCAGAGAGgttgatcatg ... tgttgcacagGGCTTGCCACCTTGCAAAACAAGCTTTTGATGAGGCTATTGCAGAACTTGA
EST: gi|110715051|gb|EE092660.1|EE092660
EST:     GCTTTGAACTTTTCTGTCTTCTACTATGAAATTTTGAACTCCCCAGAGAG                         GGCTTGCCACCTTGCAAAACAAGCTTTTGATGAGGCTATTGCAGAACTTGA
genomic: GCTTTGAACTTTTCTGTCTTCTACTATGAAATTTTGAACTCCCCAGAGAGgttgatcatg ... tgttgcacagGGCTTGCCACCTTGCAAAACAAGCTTTTGATGAGGCTATTGCAGAACTTGA
EST: gi|71884972|gb|DT034027.1|DT034027
EST:     GCTTTGAACTTTTCTGTCTTCTACTATGAAATTTTGAACTCCCCAGAGAG                         GGCTTGCCACCTTGCAAAACAAGCTTTTGATGAGGCTATTGCAGAACTTGA
genomic: GCTTTGAACTTTTCTGTCTTCTACTATGAAATTTTGAACTCCCCAGAGAGgttgatcatg ... tgttgcacagGGCTTGCCACCTTGCAAAACAAGCTTTTGATGAGGCTATTGCAGAACTTGA
EST: gi|45770683|gb|CN006535.1|CN006535
EST:     GCTTTGAACTTTTCTGTCTTCTACTATGAAATTTTGAACTCCCCAGAGAG                         GGCTTGCCACCTTGCAAAACAAGCTTTTGATGAGGCTATTGCAGAACTTGA
genomic: GCTTTGAACTTTTCTGTCTTCTACTATGAAATTTTGAACTCCCCAGAGAGgttgatcatg ... tgttgcacagGGCTTGCCACCTTGCAAAACAAGCTTTTGATGAGGCTATTGCAGAACTTGA
EST: gi|110398286|gb|EC964539.1|EC964539
EST:     GCTTTGAACTTTTCTGTCTTCTACTATGAAATTTTGAACTCCCCAGAGAG                         GGCTTGCCACCTTGCAAAACAAGCTTTTGATGAGGCTATTGCAGAACTTGA
genomic: GCTTTGAACTTTTCTGTCTTCTACTATGAAATTTTGAACTCCCCAGAGAGgttgatcatg ... tgttgcacagGGCTTGCCACCTTGCAAAACAAGCTTTTGATGAGGCTATTGCAGAACTTGA
EST: gi|110699231|gb|EE076048.1|EE076048
EST:     GCTTTGAACTTTTCTGTTTTCTACTATGAAATTTTGAACTCCCCAGAGAG                         GGCTTGCCACCTTGCAAAACAAGCTTTTGATGAGGCTATTGCAGAACTTGA
genomic: GCTTTGAACTTTTCTGTCTTCTACTATGAAATTTTGAACTCCCCAGAGAGgttgatcatg ... tgttgcacagGGCTTGCCACCTTGCAAAACAAGCTTTTGATGAGGCTATTGCAGAACTTGA
EST: gi|34319532|gb|CF372286.1|CF372286
EST:     TCTTTGAACTTTTCTGTCTTCTACTATGAAATTTTGAACTCCCCAGAGAG                         GGCTTGCCACCTTGCAAAACAAGCTTTTGATGAGGCTATTGCAGAACTTGA
genomic: GCTTTGAACTTTTCTGTCTTCTACTATGAAATTTTGAACTCCCCAGAGAGgttgatcatg ... tgttgcacagGGCTTGCCACCTTGCAAAACAAGCTTTTGATGAGGCTATTGCAGAACTTGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctccactttcttgagttgttaaggttctgttttgttttaaatttgtgttgcacagGGCTTGCCACCTTGCAAAACAAGCTTTTGATGAGGCTATTGCAGAACTTGATAGCCTGAATGAAGAATCATACAAGGATAGTACCCTTATTATGCAGCTT
                           tgttttgttttaaatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gttgatcatgctctctgatttggactatttatttttttggtttcttttgtgttcttacatcaagaacggaggtctagaggtttttcctccactttcttgagttgttaaggttctgttttgttttaaatttgtgttgcacagGGCTTGCCACCTTGCAAAACAAGCTTTTGATGAGGCTATTGCAGAACTTGATAGCCTGAATGAAGAATCATACAAGGATAGTACCCTTATTATGCAGCTT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT