1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...ccgttctgattttctaataatttttaacgttatatcatgatttattctcgatggacttgaatattctaactgatctttcacttggttgtaaaccttgtagCCTGCTGGAGGTCAGAGCAACATCATGTTTAGTGATGAGACCGTGCTTAAAACAGCAAAAAAGATACACAACCAGAAATTTGTGGAGCTGACTGGAAATG
species | Vitis vinifera |
transcript | Vv18s0001g05480.t01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TGGGAGAGCCTGCACCACGTAATGTACGCACATCTGTCAAAGTTTCTAAT CCTGCTGGAGGTCAGAGCAACATCATGTTTAGTGATGAGACCGTGCTTAAAEST: gi|71890552|gb|DT039607.1|DT039607
genomic: TGGGAGAGCCTGCACCACGTAATGTACGCACATCTGTCAAAGTTTCTAATgtgagtgaat ... aaccttgtagCCTGCTGGAGGTCAGAGCAACATCATGTTTAGTGATGAGACCGTGCTTAAA
EST: TGGGAGAGCCTGCACCACGTAATGTACGCACATCTGTCAAAGTTTCTAAT CCTGCTGGAGGTCAGAGCAACATCATGTTTAGTGATGAGACCGTGCTTAAAEST: gi|351055304|gb|FQ441902.1|FQ441902
genomic: TGGGAGAGCCTGCACCACGTAATGTACGCACATCTGTCAAAGTTTCTAATgtgagtgaat ... aaccttgtagCCTGCTGGAGGTCAGAGCAACATCATGTTTAGTGATGAGACCGTGCTTAAA
EST: TGGGAGAGCCTGCACCACGTAATGTACGCACATCTGTCAAAGTTTCTAAT CCTGCTGGAGGTCAGAGCAACATCATGTTTAGTGATGAGACCGTGCTTAAAEST: gi|351025084|gb|FQ433501.1|FQ433501
genomic: TGGGAGAGCCTGCACCACGTAATGTACGCACATCTGTCAAAGTTTCTAATgtgagtgaat ... aaccttgtagCCTGCTGGAGGTCAGAGCAACATCATGTTTAGTGATGAGACCGTGCTTAAA
EST: TGGGAGAGCCTGCACCACGTAATGTACGCACATCTGTCAAAGTTTCTAAT CCTGCTGGAGGTCAGAGCAACATCATGTTTAGTGATGAGACCGTGCTTAAAEST: gi|349808206|gb|FQ403393.1|FQ403393
genomic: TGGGAGAGCCTGCACCACGTAATGTACGCACATCTGTCAAAGTTTCTAATgtgagtgaat ... aaccttgtagCCTGCTGGAGGTCAGAGCAACATCATGTTTAGTGATGAGACCGTGCTTAAA
EST: TGGGAGAGCCTGCACCACGTAATGTACGCACATCTGTCAAAGTTTCTAAT CCTGCTGGAGGTCAGAGCAACATCATGTTTAGTGATGAGACCATGCTTAAAEST: gi|351052161|gb|FQ450731.1|FQ450731
genomic: TGGGAGAGCCTGCACCACGTAATGTACGCACATCTGTCAAAGTTTCTAATgtgagtgaat ... aaccttgtagCCTGCTGGAGGTCAGAGCAACATCATGTTTAGTGATGAGACCGTGCTTAAA
EST: TGGGAGAGCCTGCACCACGTAATGTACGCACATCTGTCAAAGTTTCTAAT CCTGCTGGAGGTCAGAGCAACATCATGTTTAGTGATGAGACCGTGCTTAANEST: gi|351033213|gb|FQ461985.1|FQ461985
genomic: TGGGAGAGCCTGCACCACGTAATGTACGCACATCTGTCAAAGTTTCTAATgtgagtgaat ... aaccttgtagCCTGCTGGAGGTCAGAGCAACATCATGTTTAGTGATGAGACCGTGCTTAAA
EST: TGGGAGAGCCTGCACCACGTAATGTACGCACATCTGTCAAAGTTTCTAAT CCTGCTGGAGGTCAGAGCAACATCATGTTTAGTGATGAGAEST: gi|352795622|gb|FQ480210.1|FQ480210
genomic: TGGGAGAGCCTGCACCACGTAATGTACGCACATCTGTCAAAGTTTCTAATgtgagtgaat ... aaccttgtagCCTGCTGGAGGTCAGAGCAACATCATGTTTAGTGATGAGA
EST: TGGGAGAGCCTGCGCCACGTAATGTACGCACATCTGTCAAAGTTTCTAAT CCTGCTGGAGGTCAGAGCAACATCATGTTTAGTGATGAGACCGTGCTTAAAEST: gi|351034181|gb|FQ463115.1|FQ463115
genomic: TGGGAGAGCCTGCACCACGTAATGTACGCACATCTGTCAAAGTTTCTAATgtgagtgaat ... aaccttgtagCCTGCTGGAGGTCAGAGCAACATCATGTTTAGTGATGAGACCGTGCTTAAA
EST: TGGGAGAGCCTGCACCACGTAATGTACGCACATCTGTCAAAGTTTCTAAT CCTGCTGGAGGTCAGAGCAACATCATGTTTAGTGATGAGACCGTGCTTAAAEST: gi|351016411|gb|FQ423838.1|FQ423838
genomic: TGGGAGAGCCTGCACCACGTAATGTACGCACATCTGTCAAAGTTTCTAATgtgagtgaat ... aaccttgtagCCTGCTGGAGGTCAGAGCAACATCATGTTTAGTGATGAGACCGTGCTTAAA
EST: TGGGAGAGCCTGCACCACGTAATGTACGCACATCTGTCAAAGTTTCTAAT CCTGCTGGAGGTCAGAGCAACATCATGTTTAGTGATGAGACCGTGCTTAAAEST: gi|351056465|gb|FQ454326.1|FQ454326
genomic: TGGGAGAGCCTGCACCACGTAATGTACGCACATCTGTCAAAGTTTCTAATgtgagtgaat ... aaccttgtagCCTGCTGGAGGTCAGAGCAACATCATGTTTAGTGATGAGACCGTGCTTAAA
EST: TGGGAGAGCCTGCACCACGTAATGTACGCACATCTGTCAAAGTTTCTAAT CCTGCTGGAGGTCAGAGCAACATCATGTTTAGTGATGAGACCGTGCTTAAAEST: gi|110703051|gb|EE079558.1|EE079558
genomic: TGGGAGAGCCTGCACCACGTAATGTACGCACATCTGTCAAAGTTTCTAATgtgagtgaat ... aaccttgtagCCTGCTGGAGGTCAGAGCAACATCATGTTTAGTGATGAGACCGTGCTTAAA
EST: TGGGAGAGCCTGCACCACGTAATGTACGCACATCTGTCAAAGTTTCTAAT CCTGCTGGAGGTCAGAGCAACATCATGTTTAGTGATGAGACCGTGCTTAAAEST: gi|110429233|gb|EC995723.1|EC995723
genomic: TGGGAGAGCCTGCACCACGTAATGTACGCACATCTGTCAAAGTTTCTAATgtgagtgaat ... aaccttgtagCCTGCTGGAGGTCAGAGCAACATCATGTTTAGTGATGAGACCGTGCTTAAA
EST: TGGGAGAGCCTGCACCACGTAATGTACGCACATCTGTCAAAGTTTCTAAT CCTGCTGGAGGTCAGAGCAACATCATGTTTAGTGATGAGACCGTGCEST: gi|351022504|gb|FQ447026.1|FQ447026
genomic: TGGGAGAGCCTGCACCACGTAATGTACGCACATCTGTCAAAGTTTCTAATgtgagtgaat ... aaccttgtagCCTGCTGGAGGTCAGAGCAACATCATGTTTAGTGATGAGACCGTGC
EST: TGGGAGAGCCTGCACCACGTAATGTACGCACATCTGTCAAAGTTTCTAAT CCTGCTGGAGGTCAGAGCAACATCATGTTTAGTGATGAGACCGTGCTTAAAEST: gi|349824984|gb|FQ406556.1|FQ406556
genomic: TGGGAGAGCCTGCACCACGTAATGTACGCACATCTGTCAAAGTTTCTAATgtgagtgaat ... aaccttgtagCCTGCTGGAGGTCAGAGCAACATCATGTTTAGTGATGAGACCGTGCTTAAA
EST: TGGGAGAGCCTGCACCACGTAATGTACGCACATCTGTCAAAGTTTCTAAT CCTGCTGGAGGTCAGAGCAACATCATGTTTAGTGATGAGACCGTGCTTAAAEST: gi|351022653|gb|FQ428562.1|FQ428562
genomic: TGGGAGAGCCTGCACCACGTAATGTACGCACATCTGTCAAAGTTTCTAATgtgagtgaat ... aaccttgtagCCTGCTGGAGGTCAGAGCAACATCATGTTTAGTGATGAGACCGTGCTTAAA
EST: TGGGAGAGCCTGCACCACGTAATGTACGCACATCTGTCAAAGTTTCTAAT CCTGCTGGAGGTCAGAGCEST: gi|351055621|gb|FQ452086.1|FQ452086
genomic: TGGGAGAGCCTGCACCACGTAATGTACGCACATCTGTCAAAGTTTCTAATgtgagtgaat ... aaccttgtagCCTGCTGGAGGTCAGAGC
EST: TGGGAGAGCCTGCACCACGTAATGTACGCACATCTGTCAAAGTTTCTAAT CCTGCTGGAGGTCAGAGCAACATCATGTTTAGTGATGAGACTGTGCTTAANEST: gi|351038942|gb|FQ457617.1|FQ457617
genomic: TGGGAGAGCCTGCACCACGTAATGTACGCACATCTGTCAAAGTTTCTAATgtgagtgaat ... aaccttgtagCCTGCTGGAGGTCAGAGCAACATCATGTTTAGTGATGAGACCGTGCTTAAA
EST: TGGGAGAGCCTGCACCACGTAATGTACGCACATCTGTCAAAGTTTCTAAT CCTGCTGGAGGTCAGAGCAACATCATGTTTAGTGATGAGACCGTGCTTAAAEST: gi|351034791|gb|FQ458148.1|FQ458148
genomic: TGGGAGAGCCTGCACCACGTAATGTACGCACATCTGTCAAAGTTTCTAATgtgagtgaat ... aaccttgtagCCTGCTGGAGGTCAGAGCAACATCATGTTTAGTGATGAGACCGTGCTTAAA
EST: TGGGAGAGCCTGCACCACGTAATGTACGCACATCTGTCAAAGTTTCTAAT CCTGCTGGAGGTCAGAGCAACATCATGTTTAGTGATGAGACCGTGCTTAAAEST: gi|351036728|gb|FQ457441.1|FQ457441
genomic: TGGGAGAGCCTGCACCACGTAATGTACGCACATCTGTCAAAGTTTCTAATgtgagtgaat ... aaccttgtagCCTGCTGGAGGTCAGAGCAACATCATGTTTAGTGATGAGACCGTGCTTAAA
EST: TGGGAGAGCCTGCACCACGTAATGTACGCACATCTGTCAAAGTTTCTAAT CCTGCTGGAGGTCAGAGCAACATCATGTTTAGTGATGAGACCGTGCTTAAAEST: gi|351052900|gb|FQ453887.1|FQ453887
genomic: TGGGAGAGCCTGCACCACGTAATGTACGCACATCTGTCAAAGTTTCTAATgtgagtgaat ... aaccttgtagCCTGCTGGAGGTCAGAGCAACATCATGTTTAGTGATGAGACCGTGCTTAAA
EST: TGGGAGAGCCTGCACCACGTAATGTACGCACATCTGTCAAAGTTTCTAAT CCTGCTGGAGGTCAGAGCAACATCATGTTTAGTGATGAGACCCTGCTTAAA
genomic: TGGGAGAGCCTGCACCACGTAATGTACGCACATCTGTCAAAGTTTCTAATgtgagtgaat ... aaccttgtagCCTGCTGGAGGTCAGAGCAACATCATGTTTAGTGATGAGACCGTGCTTAAA
tctcgatggacttgaatattctaactgatctttcacttggttgtaaaccttgtagCCTGCTGGAGGTCAGAGCAACATCATGTTTAGTGATGAGACCGTGCTTAAAACAGCAAAAAAGATACACAACCAGAAATTTGTGGAGCTGACTGGAAATG
aatattctaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ccgttctgattttctaataatttttaacgttatatcatgatttattctcgatggacttgaatattctaactgatctttcacttggttgtaaaccttgtagCCTGCTGGAGGTCAGAGCAACATCATGTTTAGTGATGAGACCGTGCTTAAAACAGCAAAAAAGATACACAACCAGAAATTTGTGGAGCTGACTGGAAATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - -catgatt