1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtaaatttaaaattttatcaactggaattagctaaagaggtaattgtttctcatatccttcatgttttccatgccatagATGGAAAAATCAGATGCTTACAGGAAAAGCTCGGGTTCTGGAAAGAAATGGGATGGTGGTGGCCCGGGAGGTCCTGGAAGGGGTCCATATGGTGGTGGTC
species | Vitis vinifera |
transcript | Vv18s0001g03450.t01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GGGCTATTGTGAATTTCATTGGCGTGTTTTTTGCAACAATGTTCTCG ATGGAAAAATCAGATGCTTACAGGAAAAGCTCGGGTTCTGGAAAGAAATGGEST: gi|110403915|gb|EC969765.1|EC969765
genomic: GGGCTATTGTGAATTTCATTGGCGTGTTTTTTGTGACAATGTTCTCGgtaaatttaa ... catgccatagATGGAAAAATCAGATGCTTACAGGAAAAGCTCGGGTTCTGGAAAGAAATGG
EST: NNNGGGCTATTGTGAATTTCATTGGCGTGTTTTTTGTGACAATGTTCTCG ATGGAAAAATCAGATGCTTACAGGAAAAGCTCGGGTTCTGGAAAGAAATGGEST: gi|37184513|gb|CF603867.1|CF603867
genomic: TTTGGGCTATTGTGAATTTCATTGGCGTGTTTTTTGTGACAATGTTCTCGgtaaatttaa ... catgccatagATGGAAAAATCAGATGCTTACAGGAAAAGCTCGGGTTCTGGAAAGAAATGG
EST: NNNGGGCTATTGTGAATTTCATTGGCGTGTTTTTTGTGACAATGTTCTCG ATGGAAAAATCAGATGCTTACAGGAAAAGCTCGGGTTCTGGAAAGAAATGGEST: gi|32459482|gb|CD800656.1|CD800656
genomic: TTTGGGCTATTGTGAATTTCATTGGCGTGTTTTTTGTGACAATGTTCTCGgtaaatttaa ... catgccatagATGGAAAAATCAGATGCTTACAGGAAAAGCTCGGGTTCTGGAAAGAAATGG
EST: GGGCTATTGTGAATTTCATTGGCGTGGTTTTTGTGACAAAATGTTCTCG ATGGAAAAATCAGATGCTTACAGGAAAAGCTCGGGTTCTGGAAAGAAATGGEST: gi|110399466|gb|EC965973.1|EC965973
genomic: GGGCTATTGTGAATTTCATTGGCGTGTTTTTTGTGAC--AATGTTCTCGgtaaatttaa ... catgccatagATGGAAAAATCAGATGCTTACAGGAAAAGCTCGGGTTCTGGAAAGAAATGG
EST: NNNGGGCTATTGTGAATTTCATTGGCGTGTTTTTTGTGACAATGTTCTCG ATGGAAAAATCAGATGCTTACAGGAAAAGCTCGGGTTCTGGAAAGAAATGGEST: gi|110402356|gb|EC959954.1|EC959954
genomic: TTTGGGCTATTGTGAATTTCATTGGCGTGTTTTTTGTGACAATGTTCTCGgtaaatttaa ... catgccatagATGGAAAAATCAGATGCTTACAGGAAAAGCTCGGGTTCTGGAAAGAAATGG
EST: NNNGGGCTATTGTGAATTTCATTGGCGTGTTTTTTGTGACAATGTTCTCG ATGGAAAAATCAGATGCTTACAGGAAAAGCTCGGGTTCTGGAAAGAAATGGEST: gi|110404930|gb|EC970457.1|EC970457
genomic: TTTGGGCTATTGTGAATTTCATTGGCGTGTTTTTTGTGACAATGTTCTCGgtaaatttaa ... catgccatagATGGAAAAATCAGATGCTTACAGGAAAAGCTCGGGTTCTGGAAAGAAATGG
EST: NNNGGGCTATTGTGAATTTCATTGGCGTGTTTTTTGTGACAATGTTCTCG ATGGAAAAATCAGATGCTTACAGGAAAAGCTCGGGTTCTGGAAAGAAATGG
genomic: TTTGGGCTATTGTGAATTTCATTGGCGTGTTTTTTGTGACAATGTTCTCGgtaaatttaa ... catgccatagATGGAAAAATCAGATGCTTACAGGAAAAGCTCGGGTTCTGGAAAGAAATGG
gaattagctaaagaggtaattgtttctcatatccttcatgttttccatgccatagATGGAAAAATCAGATGCTTACAGGAAAAGCTCGGGTTCTGGAAAGAAATGGGATGGTGGTGGCCCGGGAGGTCCTGGAAGGGGTCCATATGGTGGTGGTC
agctaaa putative branch site (score: 3)
tccttcatgttttcc putative PPT
taattgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaatttaaaattttatcaactggaattagctaaagaggtaattgtttctcatatccttcatgttttccatgccatagATGGAAAAATCAGATGCTTACAGGAAAAGCTCGGGTTCTGGAAAGAAATGGGATGGTGGTGGCCCGGGAGGTCCTGGAAGGGGTCCATATGGTGGTGGTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG