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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttcttattctccatccagtttcctttttgaattccataaaatgatataatggtgtcatcattgtcatgtaattgtttcttgcacactagTCTCCCACAGGAGATGAAGCATTCAATGACAATGGTTTAGTGCCCCGGACAATTCGATTGCTCAAAGACAGATACCCTGATCTT

Basic information

species Vitis vinifera
transcript Vv18s0001g02550.t01
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv18s0001g02550.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA06G12110.1 (Glycine max), 3'ss of exon 4
gttcttattctccatccagtttcctttttgaattccataaaatgatataatggtgtcatcattgtcatgtaattgtttcttgcacactagTCTCCCACAGGAGATGAAGCATTCAATGACAATGGTTTAGTGCCCCGGACAATTCGATTGCTCAAAGACAGATACCCTGATCTT
||||| ||||||  ||| |  | || |  |  |||  ||  || |     | |||| |||    |  | |||  | ||    | |  ||||||||||||||||||||||||| || ||| |||||||||||||| |||||||| || |||||||| || |  ||||| || |||
gttct-attctctctcctgcatactataggctttcagtaggataact--gtagtgtaatc----tagtataacagatttcccc-ctttagTCTCCCACAGGAGATGAAGCATACAGTGAAAATGGTTTAGTGCCTCGGACAATACGTTTGCTCAAGGATAAGTACCCAGACCTT

upper sequence: Vv18s0001g02550.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA04G42670.1 (Glycine max), 3'ss of exon 5
gttcttattctccatccagtttcctttttgaattccataaaatgatataatggtgtcatcattgtcatgtaattgtttcttgcacactagTCTCCCACAGGAGATGAAGCATTCAATGACAATGGTTTAGTGCCCCGGACAATTCGATTGCTCAAAGACAGATACCCTGATCTT
                                          | | ||||  |       ||  |  | |||  | ||    | |  ||||||||||||||||||||||||| |||||| |||||||||||||| || ||||| || |||||||| || |  ||||| || |||
-----------------------------------------gtaagataactgcagtgcaatc-tagtataacagatttcccc-ctttagTCTCCCACAGGAGATGAAGCATACAATGAAAATGGTTTAGTGCCTCGAACAATACGTTTGCTCAAGGATAAGTACCCAGACCTT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|352789677|gb|FQ476275.1|FQ476275
EST:     TTGGTGTAAACAGTGTTGTGCTCTTTCCTAAAGTTCCAGATGCCTTGAAG                         TCTCCCACAGGAGATGAAGCATTCAATGACAATGGTTTAGTGCCCCGGACA
genomic: TTGGTGTAAACAGTGTTGTGCTCTTTCCTAAAGTTCCAGATGCCTTGAAGgttcttattc ... tgcacactagTCTCCCACAGGAGATGAAGCATTCAATGACAATGGTTTAGTGCCCCGGACA
EST: gi|351023176|gb|FQ432559.1|FQ432559
EST:     TTGGTGTAAACAGTGTTGTGCTCTTTCCTAAAGTTCCAGATGCCTTGAAG                         TCTCCCACAGGAGATGAAGCATTCAATGACAATGGTTTAGTGCCCCGGACA
genomic: TTGGTGTAAACAGTGTTGTGCTCTTTCCTAAAGTTCCAGATGCCTTGAAGgttcttattc ... tgcacactagTCTCCCACAGGAGATGAAGCATTCAATGACAATGGTTTAGTGCCCCGGACA
EST: gi|351039238|gb|FQ457913.1|FQ457913
EST:     TTGGTGTAAACAGTGTTGTGCTCTTTCCTAAAGTTCCAGATGCCTTGAAG                         TCTCCCACAGGAGATGAAGCATTCAATGACAATGGTTTAGTGCCCCGGACA
genomic: TTGGTGTAAACAGTGTTGTGCTCTTTCCTAAAGTTCCAGATGCCTTGAAGgttcttattc ... tgcacactagTCTCCCACAGGAGATGAAGCATTCAATGACAATGGTTTAGTGCCCCGGACA
EST: gi|349830570|gb|FQ416868.1|FQ416868
EST:     TTGGTGTAAACAGTGTTGTGCTCTTTCCTAAAGTTCCAGATGCCTTGAAG                         TCTCCCACAGGAGATGAAGCATTCAATGACAATGGTTTAGTGCCCCGGACA
genomic: TTGGTGTAAACAGTGTTGTGCTCTTTCCTAAAGTTCCAGATGCCTTGAAGgttcttattc ... tgcacactagTCTCCCACAGGAGATGAAGCATTCAATGACAATGGTTTAGTGCCCCGGACA
EST: gi|351044281|gb|FQ447635.1|FQ447635
EST:     TTGGTGTAAACAGTGTTGTGCTCTTTCCTAAAGTTCCAGATGCCTTGAAG                         TCTCCCACAGGAGATGAAGCATTCAATGACAATGGTTTAGTGCCCCGGACA
genomic: TTGGTGTAAACAGTGTTGTGCTCTTTCCTAAAGTTCCAGATGCCTTGAAGgttcttattc ... tgcacactagTCTCCCACAGGAGATGAAGCATTCAATGACAATGGTTTAGTGCCCCGGACA
EST: gi|351036615|gb|FQ457328.1|FQ457328
EST:     TTGGTGTAAACAGTGTTGTGCTCTTTCCTAAAGTTCCAGATGCCTTGAAG                         TCTCCCACAGGAGATGAAGCATTCAATGACAATGGTTTAGTGCCCCGGACA
genomic: TTGGTGTAAACAGTGTTGTGCTCTTTCCTAAAGTTCCAGATGCCTTGAAGgttcttattc ... tgcacactagTCTCCCACAGGAGATGAAGCATTCAATGACAATGGTTTAGTGCCCCGGACA
EST: gi|349828957|gb|FQ419290.1|FQ419290
EST:     TTGGTGTAAACAGTGTTGTGCTCTTTCCTAAAGTTCCAGATGCCTTGAAG                         TCTCCCACAGGAGATGAAGCATTCAATGACAATGGTTTAGTGCCCCGGACA
genomic: TTGGTGTAAACAGTGTTGTGCTCTTTCCTAAAGTTCCAGATGCCTTGAAGgttcttattc ... tgcacactagTCTCCCACAGGAGATGAAGCATTCAATGACAATGGTTTAGTGCCCCGGACA
EST: gi|351052784|gb|FQ456511.1|FQ456511
EST:     TTGGTGTAAACAGTGTTGTGCTCTTTCCTAAAGTTCCAGATGCCTTGAAG                         TCTCCCACAGGAGATGAAGCATTCAATGACAATGGTTTAGTGCCCCGGACA
genomic: TTGGTGTAAACAGTGTTGTGCTCTTTCCTAAAGTTCCAGATGCCTTGAAGgttcttattc ... tgcacactagTCTCCCACAGGAGATGAAGCATTCAATGACAATGGTTTAGTGCCCCGGACA
EST: gi|110386828|gb|EC951456.1|EC951456
EST:     TTGGTGTAAACAGTGTTGTGCTCTTTCCTAAAGTTCCAGATGCCTTGAAG                         TCTCCCACAGGAGATGAAGCATTCAATGACAATGGTTTAGTGCCCCGGACA
genomic: TTGGTGTAAACAGTGTTGTGCTCTTTCCTAAAGTTCCAGATGCCTTGAAGgttcttattc ... tgcacactagTCTCCCACAGGAGATGAAGCATTCAATGACAATGGTTTAGTGCCCCGGACA
EST: gi|351044566|gb|FQ443097.1|FQ443097
EST:     TTGGTGTAAACAGTGTTGTGCTCTTTCCTAAAGTTCCAGATGCCTTGAAG                         TCTCCCACAGGAGATGAAGCATTCAATGACAATGGTTTAGTGCCCCGGACA
genomic: TTGGTGTAAACAGTGTTGTGCTCTTTCCTAAAGTTCCAGATGCCTTGAAGgttcttattc ... tgcacactagTCTCCCACAGGAGATGAAGCATTCAATGACAATGGTTTAGTGCCCCGGACA
EST: gi|110373793|gb|EC938150.1|EC938150
EST:     TTGGTGTAAACAGTGTTGTGCTCTTTCCTAAAGTTCCAGATGCCTTGAAG                         TCTCCCACAGGAGATGAAGCATTCAATGACAATGGTTTAGTGCCCCGGACA
genomic: TTGGTGTAAACAGTGTTGTGCTCTTTCCTAAAGTTCCAGATGCCTTGAAGgttcttattc ... tgcacactagTCTCCCACAGGAGATGAAGCATTCAATGACAATGGTTTAGTGCCCCGGACA
EST: gi|110732090|gb|EE107070.1|EE107070
EST:     TTGGTGTAAACAGTGTTGTGCTCTTTCCTAAAGT-CCAGATGCCTTGAAG                         TCTCCCACAGGAGATGAAGCATTCAATGACAATGGTTTANTGCCCCGGACA
genomic: TTGGTGTAAACAGTGTTGTGCTCTTTCCTAAAGTTCCAGATGCCTTGAAGgttcttattc ... tgcacactagTCTCCCACAGGAGATGAAGCATTCAATGACAATGGTTTAGTGCCCCGGACA
EST: gi|351055179|gb|FQ440518.1|FQ440518
EST:     TTGGTGTAAACAGTGTTGTGCTCTTTCCTAAAGTTCCAGATGCCTTGAAG                         TCTCCCACAGGAGATGAAGCATTCAATGACAATGGTTTAGTGCCCCGGACA
genomic: TTGGTGTAAACAGTGTTGTGCTCTTTCCTAAAGTTCCAGATGCCTTGAAGgttcttattc ... tgcacactagTCTCCCACAGGAGATGAAGCATTCAATGACAATGGTTTAGTGCCCCGGACA
EST: gi|351012975|gb|FQ433702.1|FQ433702
EST:     TTGGTGTAAACAGTGTTGTGCTCTTTCCTAAAGTTCCAGATGCCTTGAAG                         TCTCCCACAGGAGATGAAGCATTCAATGACAATGGTTTAGTGCCCCGGACA
genomic: TTGGTGTAAACAGTGTTGTGCTCTTTCCTAAAGTTCCAGATGCCTTGAAGgttcttattc ... tgcacactagTCTCCCACAGGAGATGAAGCATTCAATGACAATGGTTTAGTGCCCCGGACA
EST: gi|351020103|gb|FQ445710.1|FQ445710
EST:     TTGGTGTAAACAGTGTTGTGCTCTTTCCTAAAGTTCCAGATGCCTTGAAG                         TCTCCCACAGGAGATGAAGCATTCAATGACAATGGTTTAGTGCCCCGGACA
genomic: TTGGTGTAAACAGTGTTGTGCTCTTTCCTAAAGTTCCAGATGCCTTGAAGgttcttattc ... tgcacactagTCTCCCACAGGAGATGAAGCATTCAATGACAATGGTTTAGTGCCCCGGACA
EST: gi|161718611|gb|FC068206.1|FC068206
EST:     TTGGTGTAAACAGTGTTGTGCTCTTTCCTAAAGTTCCAGATGCCTTGAAG                         TCTCCCACAGGAGATGAA
genomic: TTGGTGTAAACAGTGTTGTGCTCTTTCCTAAAGTTCCAGATGCCTTGAAGgttcttattc ... tgcacactagTCTCCCACAGGAGATGAA
EST: gi|351054528|gb|FQ452004.1|FQ452004
EST:     TTGGTGTAAACAGTGTTGTGCTCTTTCCTAAAGTTCCAGATGCCTTGAAG                         TCTCCCACAGGAGATGAAGCATTCAATGACAATGGTTTAGTGCCCCGGACA
genomic: TTGGTGTAAACAGTGTTGTGCTCTTTCCTAAAGTTCCAGATGCCTTGAAGgttcttattc ... tgcacactagTCTCCCACAGGAGATGAAGCATTCAATGACAATGGTTTAGTGCCCCGGACA
EST: gi|349830492|gb|FQ416790.1|FQ416790
EST:     TTGGTGTAAACAGTGTTGTGCTCTTTCCTAAAGTTCCAGATGCCTTGAAG                         TCTCCCACAGGAGATGAAGCATTCAATGACAATGGTTTAGTGCCCCGGACA
genomic: TTGGTGTAAACAGTGTTGTGCTCTTTCCTAAAGTTCCAGATGCCTTGAAGgttcttattc ... tgcacactagTCTCCCACAGGAGATGAAGCATTCAATGACAATGGTTTAGTGCCCCGGACA
EST: gi|351015476|gb|FQ447305.1|FQ447305
EST:     TTGGTGTAAACAGTGTTGTGCTCTTTCCTAAAGTTCCAGATGCCTTGAAG                         TCTCCCACAGGAGATGAAGCATTCAATGACAATGGTTTAGTGCCCCGGACA
genomic: TTGGTGTAAACAGTGTTGTGCTCTTTCCTAAAGTTCCAGATGCCTTGAAGgttcttattc ... tgcacactagTCTCCCACAGGAGATGAAGCATTCAATGACAATGGTTTAGTGCCCCGGACA
EST: gi|349826066|gb|FQ415871.1|FQ415871
EST:     TTGGTGTAAACAGTGTTGTGCTCTTTCCTAAAGTTCCAGATGCCTTGAAG                         TCTCCCACAGGAGATGAAGCATTCAATGACAATGGTTTAGTGCCCCGGACA
genomic: TTGGTGTAAACAGTGTTGTGCTCTTTCCTAAAGTTCCAGATGCCTTGAAGgttcttattc ... tgcacactagTCTCCCACAGGAGATGAAGCATTCAATGACAATGGTTTAGTGCCCCGGACA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cataaaatgatataatggtgtcatcattgtcatgtaattgtttcttgcacactagTCTCCCACAGGAGATGAAGCATTCAATGACAATGGTTTAGTGCCCCGGACAATTCGATTGCTCAAAGACAGATACCCTGATCTT
                                     ttgtttctt  CT-rich tract
     aatgatataat  TA-rich tract